Kwalitee Issues

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

package_version_matches_dist_version

Fix the version(s).

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: Bio::AutomatedAnnotation::Exceptions

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

no_invalid_versions

Fix the version numbers so that version::is_lax($version) returns true.

Error:

  • lib/Bio/AutomatedAnnotation/Prokka.pm: HASH(0x6f4c400)

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::AutomatedAnnotation::Exceptions

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name Abstract Version View
Bio::AutomatedAnnotation Automated annotation of assemblies metacpan
Bio::AutomatedAnnotation::CommandLine::AnnotateBacteria provide a commandline interface to the annotation wrappers metacpan
Bio::AutomatedAnnotation::CommandLine::GeneNameOccurances Create a spreadsheet with gene name occurances metacpan
Bio::AutomatedAnnotation::CommandLine::ParseGenesFromGFFs provide a commandline interface to pull out genes from multiple GFF files metacpan
Bio::AutomatedAnnotation::Exceptions Exceptions for input data metacpan
Bio::AutomatedAnnotation::External::Cmscan Run and parse the output of cmscan metacpan
Bio::AutomatedAnnotation::GeneNameOccurances Parse the gene names from multiple GFF files and provide a matrix of matches. metacpan
Bio::AutomatedAnnotation::GeneNamesFromGFF Parse a GFF and efficiently extract out the Gene Names metacpan
Bio::AutomatedAnnotation::ParseGenesFromGFF Parse a GFF file and efficiency extract the gene sequence. metacpan
Bio::AutomatedAnnotation::ParseGenesFromGFFs Parse GFF files and efficiency extract the gene sequence. metacpan
Bio::AutomatedAnnotation::Prokka Prokka class for bacterial annotation metacpan
Bio::AutomatedAnnotation::SpreadsheetOfGeneOccurances Output a spreadsheet with the gene occurances per file metacpan

Other Files

MANIFEST metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan
dist.ini metacpan