Kwalitee Issues


Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.


Fix the version(s).


Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: Bio::AutomatedAnnotation::Exceptions


Add a META.json to the distribution. Your buildtool should be able to autogenerate it.


If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.


Fix the version numbers so that version::is_lax($version) returns true.


  • lib/Bio/AutomatedAnnotation/ HASH(0x66ccc90)


Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::AutomatedAnnotation::Exceptions


Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.


Name Abstract Version View
Bio::AutomatedAnnotation Automated annotation of assemblies metacpan
Bio::AutomatedAnnotation::CommandLine::AnnotateBacteria provide a commandline interface to the annotation wrappers metacpan
Bio::AutomatedAnnotation::CommandLine::GeneNameOccurances Create a spreadsheet with gene name occurances metacpan
Bio::AutomatedAnnotation::CommandLine::ParseGenesFromGFFs provide a commandline interface to pull out genes from multiple GFF files metacpan
Bio::AutomatedAnnotation::Exceptions Exceptions for input data metacpan
Bio::AutomatedAnnotation::External::Cmscan Run and parse the output of cmscan metacpan
Bio::AutomatedAnnotation::GeneNameOccurances Parse the gene names from multiple GFF files and provide a matrix of matches. metacpan
Bio::AutomatedAnnotation::GeneNamesFromGFF Parse a GFF and efficiently extract out the Gene Names metacpan
Bio::AutomatedAnnotation::ParseGenesFromGFF Parse a GFF file and efficiency extract the gene sequence. metacpan
Bio::AutomatedAnnotation::ParseGenesFromGFFs Parse GFF files and efficiency extract the gene sequence. metacpan
Bio::AutomatedAnnotation::Prokka Prokka class for bacterial annotation metacpan
Bio::AutomatedAnnotation::SpreadsheetOfGeneOccurances Output a spreadsheet with the gene occurances per file metacpan

Other Files

MANIFEST metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan
dist.ini metacpan