Kwalitee Issues

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

has_manifest

Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error: Cannot find MANIFEST in dist.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: Bio-Prospect-1.04/Bio/Prospect/CBT/Exception.pm -- Around line 49: =back doesn't take any parameters, but you said =back 4

package_version_matches_dist_version

Fix the version(s).

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: Bio::Prospect::CBT::Exceptions

consistent_version

Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).

Error: 1.09,1.10,1.11,1.12,1.15,1.16,1.28,1.32

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

no_invalid_versions

Fix the version numbers so that version::is_lax($version) returns true.

Error:

  • Bio/Prospect/CBT/Exception.pm: HASH(0x745e600)
  • Bio/Prospect/CBT/debug.pm: HASH(0x745ecf0)

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: Bio/Prospect/Align.pm, Bio/Prospect/CBT/Exceptions.pm, Bio/Prospect/Client.pm, Bio/Prospect/Exceptions.pm, Bio/Prospect/File.pm, Bio/Prospect/Init.pm, Bio/Prospect/LocalClient.pm, Bio/Prospect/Options.pm, Bio/Prospect/SoapClient.pm, Bio/Prospect/SoapServer.pm, Bio/Prospect/Thread.pm, Bio/Prospect/ThreadSummary.pm, Bio/Prospect/utilities.pm, Bio/Prospect/CBT/debug.pm, Bio/Prospect/CBT/Exception.pm

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::Prospect::Align, Bio::Prospect::CBT::Exceptions, Bio::Prospect::Thread, Bio::Prospect::ThreadSummary

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

Modules

Name Abstract Version View
Bio::Prospect::Align Package for overlaying multiple Prospect alignments 1.15 metacpan
Bio::Prospect::Client base class for Bio::Prospect::LocalClient and Bio::Prospect::SoapClient. S<$Id: Client.pm,v 1.16 2003/11/18 19:45:45 rkh Exp $> 1.16 metacpan
Bio::Prospect::Exception 1.12 metacpan
Bio::Prospect::File interface to Prospect Files 1.15 metacpan
Bio::Prospect::Init initialization parameters for Bio::Prospect:: $Id: Init.pm,v 1.11 2003/11/18 21:04:19 rkh Exp $ 1.11 metacpan
Bio::Prospect::LocalClient execute Prospect locally $Id: LocalClient.pm,v 1.32 2003/11/18 19:45:45 rkh Exp $ 1.32 metacpan
Bio::Prospect::Options Package for representing options 1.09 metacpan
Bio::Prospect::SoapClient execute Prospect remotely $Id: SoapClient.pm,v 1.12 2003/11/18 19:45:45 rkh Exp $ 1.12 metacpan
Bio::Prospect::SoapServer execute Prospect locally $Id: SoapServer.pm,v 1.10 2003/11/18 19:45:45 rkh Exp $ 1.10 metacpan
Bio::Prospect::Thread Representation of a Prospect thread. 1.28 metacpan
Bio::Prospect::ThreadSummary Distilled version of a Bio::Prospect::Thread 1.15 metacpan
Bio::Prospect::utilities miscellaneous utilities for Prospect S<$Id: utilities.pm,v 1.10 2003/11/18 19:45:45 rkh Exp $> 1.10 metacpan
CBT::debug metacpan

Provides

Name File View
Bio::Prospect::BadUsage Bio/Prospect/Exceptions.pm metacpan
Bio::Prospect::RuntimeError Bio/Prospect/Exceptions.pm metacpan
Bio::Prospect::SequenceTooLarge Bio/Prospect/Exceptions.pm metacpan
CBT::Exception Bio/Prospect/CBT/Exception.pm metacpan

Other Files

META.yml metacpan
Makefile.PL metacpan
README metacpan