Kwalitee Issues

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

has_manifest

Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")

has_meta_yml

Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error: Cannot find MANIFEST in dist.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: Bio-SAGE-DataProcessing-1.20/lib/Bio/SAGE/DataProcessing.pm -- Around line 54: Non-ASCII character seen before =encoding in 'population’s'. Assuming CP1252

package_version_matches_dist_version

Fix the version(s).

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

no_invalid_versions

Fix the version numbers so that version::is_lax($version) returns true.

Error:

  • lib/Bio/SAGE/DataProcessing/AveragePhredFilter.pm: HASH(0x80a1ce8)
  • lib/Bio/SAGE/DataProcessing/Filter.pm: HASH(0x8092478)
  • lib/Bio/SAGE/DataProcessing/MinimumPhredFilter.pm: HASH(0x80a1c28)

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::SAGE::DataProcessing, Bio::SAGE::DataProcessing::AveragePhredFilter, Bio::SAGE::DataProcessing::Filter, Bio::SAGE::DataProcessing::MinimumPhredFilter

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name Abstract Version View
Bio::SAGE::DataProcessing Processes raw serial analysis of gene expression (SAGE) data. 1.11 metacpan
Bio::SAGE::DataProcessing::AveragePhredFilter A filter that validates sequences based on average Phred score. metacpan
Bio::SAGE::DataProcessing::Filter An abstract filter for determining whether a [di]tag is worth keeping. metacpan
Bio::SAGE::DataProcessing::MinimumPhredFilter A filter that validates sequences based on minimum Phred score. metacpan

Other Files

Makefile.PL metacpan
README metacpan