Bio-Tradis

Metadata

Analyzed metadata and errors of Bio-Tradis.

{
   "abstracts_in_pod" : {
      "Bio::Tradis" : "Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308",
      "Bio::Tradis::AddTagsToSeq" : "Takes a BAM file and creates a new BAM with tr and tq tags added to the sequence and quality strings.",
      "Bio::Tradis::Analysis::Exceptions" : "Custom exceptions",
      "Bio::Tradis::Analysis::InsertSite" : "Take in a bam file and plot the start position of each read",
      "Bio::Tradis::CombinePlots" : "Combine multiple plotfiles and generate updated statistics for the combined files",
      "Bio::Tradis::CommandLine::AddTags" : "Add given tags to the start of the sequence",
      "Bio::Tradis::CommandLine::CheckTags" : "Check for presence of tr tag in BAM file",
      "Bio::Tradis::CommandLine::FilterFastqTags" : "Remove given tags from the start of the sequence",
      "Bio::Tradis::CommandLine::PlotCombine" : "Combine multiple plotfiles and generate updated statistics for the combined files",
      "Bio::Tradis::CommandLine::PlotTradis" : "Generate plots as part of a tradis analysis",
      "Bio::Tradis::CommandLine::RemoveFastqTags" : "Remove given tags from the start of the sequence",
      "Bio::Tradis::CommandLine::RunMapping" : "Perform mapping",
      "Bio::Tradis::CommandLine::TradisAnalysis" : "Perform full tradis analysis",
      "Bio::Tradis::CommandLine::TradisBam" : "Adds tags to sequences if tags are present",
      "Bio::Tradis::DetectTags" : "Detect tr tags in BAM file",
      "Bio::Tradis::Exception" : "Exceptions for input data ",
      "Bio::Tradis::FilterTags" : "Filter tags in a fastq file",
      "Bio::Tradis::Map" : "Perform mapping",
      "Bio::Tradis::Parser::Bam" : "Very basic BAM parser. Limited functionality.",
      "Bio::Tradis::Parser::Cigar" : "Take in a cigar string and output start and end relative to the reference sequence",
      "Bio::Tradis::Parser::Fastq" : "Basic FastQ parser.",
      "Bio::Tradis::RemoveTags" : "Remove tags from seqs a fastq file",
      "Bio::Tradis::RunTradis" : "Perform all steps required for a tradis analysis",
      "Bio::Tradis::TradisPlot" : "Generate plots as part of a tradis analysis"
   },
   "author" : "AJPAGE",
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