Under maintenance.

Most probably CPANTS databases are being regenerated from scratch due to major changes in Kwalitee metrics or updates of relevant modules/perl. Usually this maintenance takes about a day or two, and some of the information may be old or missing tentatively. Sorry for the inconvenience.

Kwalitee Issues


Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.


Fix the version(s).


Add a META.json to the distribution. Your buildtool should be able to autogenerate it.


If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.


Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.


Name Abstract Version View
Bio::AssemblyImprovement Improve an assembly by scaffolding, contig ordering and gap closing. metacpan
Bio::AssemblyImprovement::Abacas::DelimiterRole Moose Role for putting in delimiters for Abacas to join up contigs metacpan
Bio::AssemblyImprovement::Abacas::Iterative Iteratively run abacas to order contigs metacpan
Bio::AssemblyImprovement::Abacas::Main Wrapper script for Abacas, just runs it in a separate directory. metacpan
Bio::AssemblyImprovement::AdapterRemoval::Trimmomatic::Main Remove adapter sequences from paired reads using Trimmomatic metacpan
Bio::AssemblyImprovement::Assemble::SGA::IndexAndCorrectReads Performs SGA error correction on the reads metacpan
Bio::AssemblyImprovement::Assemble::SGA::Main Run SGA preprocess and error correction steps metacpan
Bio::AssemblyImprovement::Assemble::SGA::PreprocessReads Preprocess reads before error correction metacpan
Bio::AssemblyImprovement::Circlator::Main Wrapper around circlator metacpan
Bio::AssemblyImprovement::DigitalNormalisation::Khmer::Main Perform digital normalisation on sequencing reads metacpan
Bio::AssemblyImprovement::FillGaps::GapFiller::Config Create the config file thats used to drive GapFiller metacpan
Bio::AssemblyImprovement::FillGaps::GapFiller::Iterative Iteratively close gaps metacpan
Bio::AssemblyImprovement::FillGaps::GapFiller::Main Run a single iteration of gapfiller metacpan
Bio::AssemblyImprovement::IvaQC::Main Wrapper around iva_qc metacpan
Bio::AssemblyImprovement::PrepareForSubmission::RenameContigs Update the names of the contigs so that the assembly can be submitted to a database like EMBL metacpan
Bio::AssemblyImprovement::PrimerRemoval::Main Remove a set of specified primers from the edges of a read using QUASR metacpan
Bio::AssemblyImprovement::Quiver::Main Wrapper around the quiver call metacpan
Bio::AssemblyImprovement::Scaffold::Descaffold Given a fasta file as input, output a descaffolded multi-fasta file. metacpan
Bio::AssemblyImprovement::Scaffold::SSpace::Config Create the config file thats used to drive SSpace metacpan
Bio::AssemblyImprovement::Scaffold::SSpace::Iterative Iteratively run SSpace. metacpan
Bio::AssemblyImprovement::Scaffold::SSpace::Main Run one iteration of SSpace metacpan
Bio::AssemblyImprovement::Scaffold::SSpace::OutputFilenameRole Role for handling output filenames metacpan
Bio::AssemblyImprovement::Scaffold::SSpace::PreprocessInputFiles Make sure the input files are in the correct format, and paths are resolved. metacpan
Bio::AssemblyImprovement::Scaffold::SSpace::TempDirectoryRole Role for handling temp directories metacpan
Bio::AssemblyImprovement::Util::FastaTools Utilities for sequences in a FASTA file metacpan
Bio::AssemblyImprovement::Util::FastqTools Take a fastq file and calculate some useful statistics and values metacpan
Bio::AssemblyImprovement::Util::GetReadLengthsRole Role for getting the read lengths from a fastq file (useful when reads are of varying lengths) metacpan
Bio::AssemblyImprovement::Util::OrderContigsByLength Sorts a fasta file by sequence length metacpan
Bio::AssemblyImprovement::Util::UnzipFileIfNeededRole Role for unzipping files if needed metacpan
Bio::AssemblyImprovement::Util::ZipFileRole Zip file metacpan
Bio::AssemblyImprovement::Validate::Executable Validates the executable is available in the path before running it. metacpan

Other Files

MANIFEST metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan
README.md metacpan
dist.ini metacpan