GBrowse

Metadata

Analyzed metadata and errors of GBrowse.

{
   "abstracts_in_pod" : {
      "Bio::DB::GFF::Aggregator::match_gap" : "GFF3 match aggregator",
      "Bio::DB::GFF::Aggregator::waba_alignment" : "A WABA alignment",
      "Bio::DB::GFF::Aggregator::wormbase_gene" : "Wormbase gene aggregator",
      "Bio::DB::Tagger" : "Simple object tagging system",
      "Bio::DB::Tagger::Tag" : "Authored tags",
      "Bio::Graphics::Browser2::AuthorizedFeatureFile" : "Add HTTP authorization features to FeatureFile",
      "Bio::Graphics::Browser2::CAlign" : "Compiled helper for Bio::Graphics::Browser::Realign",
      "Bio::Graphics::Browser2::DataBase" : "A simple cache for database handles",
      "Bio::Graphics::Browser2::GFFhelper" : "Helps gbrowse plugins handle GFF",
      "Bio::Graphics::Browser2::Markup" : "Markup routines for sequences in text form",
      "Bio::Graphics::Browser2::OptionPick" : "Pick options",
      "Bio::Graphics::Browser2::PadAlignment" : "Insert pads into a multiple alignment",
      "Bio::Graphics::Browser2::Plugin" : "Base class for gbrowse plugins.",
      "Bio::Graphics::Browser2::Plugin::AuthPlugin" : "Base class for authentication plugins",
      "Bio::Graphics::Browser2::PluginSet" : "A set of plugins",
      "Bio::Graphics::Browser2::Realign" : "Perl extension for Smith-Waterman alignments",
      "Bio::Graphics::Browser2::RegionSearch" : "Search through multiple databases for feature matches.",
      "Bio::Graphics::Browser2::Util" : "Exported utilities",
      "CGI::Toggle" : "Utility methods for collapsible sections"
   },
   "author" : "LDS",
   "buildfile_executable" : 0,
   "dir_lib" : "lib",
   "dir_t" : "t",
   "dirs_array" : [
      "bin",
      "cgi-bin",
      "conf/MobyServices",
      "conf/languages",
      "conf/plugins",
      "conf/synteny",
      "conf/themes",
      "conf",
      "contrib/AxtPairwise_convert",
      "contrib/Coverage/plugin",
      "contrib/Coverage",
      "contrib/GeneFinder/genefinder",
      "contrib/GeneFinder/nematode_gftables",
      "contrib/GeneFinder",
      "contrib/SynView/MAL11",
      "contrib/SynView/cgi-lib/DAS/GUS/Segment",
      "contrib/SynView/cgi-lib/DAS/GUS",
      "contrib/SynView/cgi-lib/DAS/Util",
      "contrib/SynView/cgi-lib/DAS",
      "contrib/SynView/cgi-lib",
      "contrib/SynView/gbrowse.conf",
      "contrib/SynView",
      "contrib/TextDumper",
      "contrib/conf_files",
      "contrib/install_macosx/scripts",
      "contrib/install_macosx",
      "contrib",
      "docs/developer_notes",
      "docs/example_remote_configs",
      "docs/pod",
      "docs",
      "etc/default",
      "etc/init.d",
      "etc",
      "htdocs/css/dropdown/images",
      "htdocs/css/dropdown",
      "htdocs/css",
      "htdocs/example_scripts",
      "htdocs/images/backgrounds",
      "htdocs/images/balloons/GBubble",
      "htdocs/images/balloons/GPlain",
      "htdocs/images/balloons",
      "htdocs/images/buttons",
      "htdocs/images/help",
      "htdocs/images/openid",
      "htdocs/images",
      "htdocs/js",
      "htdocs/tutorial/bin",
      "htdocs/tutorial/conf_files",
      "htdocs/tutorial/data_files",
      "htdocs/tutorial/dbgff/data_files",
      "htdocs/tutorial/dbgff",
      "htdocs/tutorial/figures",
      "htdocs/tutorial",
      "htdocs",
      "install_util",
      "lib/Bio/DB/GFF/Aggregator",
      "lib/Bio/DB/GFF",
      "lib/Bio/DB/SeqFeature/Store",
      "lib/Bio/DB/SeqFeature",
      "lib/Bio/DB/Tagger",
      "lib/Bio/DB",
      "lib/Bio/Graphics/Browser2/DataLoader",
      "lib/Bio/Graphics/Browser2/Plugin",
      "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing",
      "lib/Bio/Graphics/Browser2/Render/HTML",
      "lib/Bio/Graphics/Browser2/Render/Slave",
      "lib/Bio/Graphics/Browser2/Render",
      "lib/Bio/Graphics/Browser2/TrackDumper",
      "lib/Bio/Graphics/Browser2/UserTracks",
      "lib/Bio/Graphics/Browser2",
      "lib/Bio/Graphics",
      "lib/Bio",
      "lib/CGI",
      "lib/Legacy/DB",
      "lib/Legacy/Graphics/Browser",
      "lib/Legacy/Graphics",
      "lib/Legacy",
      "lib",
      "libalign",
      "sample_data/admin_uploads",
      "sample_data/gbrowse_syn/alignments",
      "sample_data/gbrowse_syn/rice",
      "sample_data/gbrowse_syn/wild_rice",
      "sample_data/gbrowse_syn",
      "sample_data/ideograms",
      "sample_data/pop_demo",
      "sample_data/yeast_chr1+2",
      "sample_data/yeast_scaffolds",
      "sample_data",
      "t/testdata/conf/languages",
      "t/testdata/conf/templates",
      "t/testdata/conf",
      "t/testdata/data/volvox",
      "t/testdata/data/volvox2",
      "t/testdata/data/volvox3",
      "t/testdata/data/volvox4",
      "t/testdata/data",
      "t/testdata/phylo_align",
      "t/testdata",
      "t",
      "t"
   ],
   "dist" : "GBrowse",
   "dynamic_config" : 1,
   "error" : {
      "consistent_version" : "0.01,0.10,0.20,0.30,0.5,1.00,1.01,1.17,2.51",
      "no_pod_errors" : "GBrowse-2.51/contrib/install_macosx/BuildConfig.pm --  Around line 24:  Unknown directive: =over4Around line 26:  '=item' outside of any '=over' GBrowse-2.51/docs/pod/CONFIGURE_HOWTO.pod --  Around line 1185:  Expected '=item *'Around line 1202:  Expected '=item *'Around line 1212:  Expected '=item *'Around line 2352:  Non-ASCII character seen before =encoding in 'Gènes'. Assuming ISO8859-1 GBrowse-2.51/docs/pod/FAQ.pod--  Around line 48:  Unknown E content in E<gmod-gbrowse@lists.sourceforge.net> GBrowse-2.51/lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm --  Around line 26:  =over is the last thing in the document?! GBrowse-2.51/lib/Bio/Graphics/Browser2/DataBase.pm --  Around line 69:  '=item' outside of any '=over'  =over without closing =back GBrowse-2.51/lib/Bio/Graphics/Browser2/DataSource.pm --  Around line 153:  You forgot a '=back' before '=head2'Around line 858:  '=item' outside of any '=over'Around line 1103:  You forgot a '=back' before '=head2'",
      "use_strict" : "Bio::Graphics::Browser2::Shellwords, Bio::DB::Tagger::Tag",
      "use_warnings" : "Bio::Graphics::Browser2::I18n, Bio::Graphics::Browser2::CAlign, Bio::Graphics::Browser2::OptionPick, Bio::Graphics::Browser2::DataLoader::bam, Bio::DB::GFF::Aggregator::match_gap, Bio::Graphics::Browser2::DataLoader::gff3, Bio::Graphics::Browser2::DataLoader::featurefile, Legacy::Graphics::Browser::Synteny, Bio::Graphics::Browser2::UserTracks::Filesystem, FakeHomol, Legacy::Graphics::Browser::PageSettings, Bio::Graphics::Browser2::DataLoader::gff, Bio::DB::GFF::Aggregator::wormbase_gene, Bio::Graphics::Browser2::DataLoader, Bio::Graphics::Browser2::Render::Slave, Bio::Graphics::Browser2::DataLoader::sam, Bio::Graphics::Browser2::DataLoader::bigwig, Bio::Graphics::Browser2::Realign, Bio::DB::SeqFeature::Store::Alias::Segment, Bio::Graphics::Browser2::SendMail, Bio::Graphics::Browser2::Plugin, Legacy::DB::SyntenyBlock, Bio::Graphics::Browser2::Plugin::AuthPlugin, Legacy::Graphics::Browser, Legacy::Graphics::Browser::Util, Bio::Graphics::Browser2::Shellwords, Bio::Graphics::Browser2::AdminTracks, Legacy::Graphics::Browser::I18n, Bio::DB::GFF::Aggregator::reftranscript, Bio::Graphics::Browser2::PluginSet, CGI::Toggle, Bio::Graphics::Browser2::TrackDumper::RichSeqMaker, Bio::Graphics::Browser2::UserDB, Bio::Graphics::Browser2::TrackDumper, Bio::Graphics::Browser2::DataLoader::generic, Bio::Graphics::Browser2::Markup, Bio::Graphics::Browser2::DataLoader::wig2bigwig, Bio::Graphics::Browser2::DataLoader::bed, Bio::Graphics::Wiggle::Loader::Nosample, Bio::Graphics::Karyotype, Bio::DB::GFF::Aggregator::waba_alignment, Bio::DB::Tagger::Tag, Bio::DB::SeqFeature::Store::BedLoader, Bio::Graphics::Browser2::PadAlignment, Bio::Graphics::Browser2::Action, Bio::Graphics::Browser2::Util, Bio::Graphics::Browser2::ExternalData, Bio::Graphics::Browser2::UserTracks::Database, Bio::Graphics::Browser2::RemoteSet, Legacy::DB::SyntenyIO"
   },
   "extension" : "tar.gz",
   "external_license_file" : "LICENSE",
   "extractable" : 1,
   "extracts_nicely" : 1,
   "file__build" : 0,
   "file_blib" : 0,
   "file_build" : 0,
   "file_build_pl" : "Build.PL",
   "file_changelog" : "Changes",
   "file_license" : "LICENSE",
   "file_makefile" : 0,
   "file_makefile_pl" : "Makefile.PL",
   "file_manifest" : "MANIFEST",
   "file_meta_json" : "META.json",
   "file_meta_yml" : "META.yml",
   "file_pm_to_blib" : 0,
   "file_readme" : "README.IF.GBROWSE.ISNT.WORKING,README,README.fedora_and_selinux,README.gff3",
   "files_array" : [
      "Build.PL",
      "Changes",
      "DISCLAIMER",
      "INSTALL",
      "LICENSE",
      "MANIFEST",
      "META.json",
      "META.yml",
      "Makefile.PL",
      "README",
      "README.IF.GBROWSE.ISNT.WORKING",
      "README.fedora_and_selinux",
      "README.gff3",
      "bin/auto_install_databases.pl",
      "bin/bed2gff3.pl",
      "bin/bp_load_gff.pl",
      "bin/gbrowse_change_passwd.pl",
      "bin/gbrowse_clean.pl",
      "bin/gbrowse_create_account.pl",
      "bin/gbrowse_grow_cloud_vol.pl",
      "bin/gbrowse_import_ucsc_db.pl",
      "bin/gbrowse_metadb_config.pl",
      "bin/gbrowse_netinstall.pl",
      "bin/gbrowse_netinstall2.pl",
      "bin/gbrowse_set_admin_passwd.pl",
      "bin/gbrowse_slave",
      "bin/gbrowse_syn_load_alignment_database.pl",
      "bin/gbrowse_syn_load_alignments_msa.pl",
      "bin/gtf2gff3.pl",
      "bin/load_genbank.pl",
      "bin/make_das_conf.pl",
      "bin/process_bamfiles.pl",
      "bin/process_gadfly.pl",
      "bin/process_ncbi_human.pl",
      "bin/process_sgd.pl",
      "bin/report_missing_language_tags.pl",
      "bin/scan_gbrowse.pl",
      "bin/ucsc_genes2gff.pl",
      "bin/wiggle2gff3.pl",
      "cgi-bin/das",
      "cgi-bin/gbgff",
      "cgi-bin/gbrowse",
      "cgi-bin/gbrowse_details",
      "cgi-bin/gbrowse_gmap",
      "cgi-bin/gbrowse_img",
      "cgi-bin/gbrowse_key_img",
      "cgi-bin/gbrowse_login",
      "cgi-bin/gbrowse_syn",
      "conf/GBrowse.conf",
      "conf/MobyServices/GbrowseServices.PMS",
      "conf/MobyServices/GbrowseServices.pm",
      "conf/MobyServices/b64_encoded_gif_renderer.pm",
      "conf/MobyServices/b64_encoded_jpeg_renderer.pm",
      "conf/MobyServices/moby.conf",
      "conf/MobyServices/text_formatted_renderer.pm",
      "conf/MobyServices/text_html_renderer.pm",
      "conf/MobyServices/text_plain_renderer.pm",
      "conf/MobyServices/text_xml_renderer.pm",
      "conf/detail_select_menu.conf",
      "conf/enzymes.txt",
      "conf/languages/POSIX.pm",
      "conf/languages/de.pm",
      "conf/languages/en.pm",
      "conf/languages/es.pm",
      "conf/languages/fr.pm",
      "conf/languages/is.pm",
      "conf/languages/it.pm",
      "conf/languages/ja.pm",
      "conf/languages/ko.pm",
      "conf/languages/nl.pm",
      "conf/languages/pl.pm",
      "conf/languages/ru.pm",
      "conf/languages/zh.pm",
      "conf/languages/zh_cn.pm",
      "conf/log4perl.conf",
      "conf/plugins/AlignTwoSequences.pm",
      "conf/plugins/Aligner.pm",
      "conf/plugins/AttributeHiliter.pm",
      "conf/plugins/BatchDumper.pm",
      "conf/plugins/Blat.pm",
      "conf/plugins/CMapDumper.pm",
      "conf/plugins/CreateBlastDB.pm",
      "conf/plugins/FBTableDumper.pm",
      "conf/plugins/FastaDumper.pm",
      "conf/plugins/FilterTest.pm",
      "conf/plugins/GeneFinder.pm",
      "conf/plugins/LDAPAuthenticate.pm",
      "conf/plugins/OligoFinder.pm",
      "conf/plugins/PamAuthenticate.pm",
      "conf/plugins/PrimerDesigner.pm",
      "conf/plugins/ProteinDumper.pm",
      "conf/plugins/RandomGene.pm",
      "conf/plugins/RestrictionAnnotator.pm",
      "conf/plugins/SequenceDumper.pm",
      "conf/plugins/SimpleTrackFinder.pm",
      "conf/plugins/SinWave.pm",
      "conf/plugins/SourceTrackFinder.pm",
      "conf/plugins/Spectrogram.pm",
      "conf/plugins/Submitter.pm",
      "conf/plugins/TestAuthenticator.pm",
      "conf/plugins/TestFinder.pm",
      "conf/plugins/TrackDumper.pm",
      "conf/plugins/TrackFinder.pm",
      "conf/plugins/test.pm",
      "conf/pop_demo.conf",
      "conf/slave_preload.conf",
      "conf/submitter_plugin.conf",
      "conf/synteny/oryza.synconf.disabled",
      "conf/synteny/rice_synteny.conf",
      "conf/synteny/wild_rice_synteny.conf",
      "conf/themes/solid_gray_colors",
      "conf/themes/transparent_colors",
      "conf/themes/warm_colors",
      "conf/volvox.conf",
      "conf/yeast_chr1+2.conf",
      "conf/yeast_renderfarm.conf",
      "conf/yeast_simple.conf",
      "contrib/AxtPairwise_convert/axt2phy.pl",
      "contrib/Coverage/INSTALL",
      "contrib/Coverage/README",
      "contrib/Coverage/plugin/Coverage.pm",
      "contrib/GeneFinder/genefinder/README",
      "contrib/GeneFinder/genefinder/gfcode.c",
      "contrib/GeneFinder/genefinder/readseq.c",
      "contrib/GeneFinder/genefinder/readseq.h",
      "contrib/GeneFinder/nematode_gftables/cds.hex",
      "contrib/GeneFinder/nematode_gftables/gftables",
      "contrib/GeneFinder/nematode_gftables/newnem.atg",
      "contrib/GeneFinder/nematode_gftables/newnem.codon",
      "contrib/GeneFinder/nematode_gftables/newnem.gene",
      "contrib/GeneFinder/nematode_gftables/newnem.intron3",
      "contrib/GeneFinder/nematode_gftables/newnem.intron5",
      "contrib/GeneFinder/nematode_gftables/ref.hist",
      "contrib/GeneFinder/nematode_gftables/zk637.atg",
      "contrib/GeneFinder/nematode_gftables/zk637.intron3",
      "contrib/GeneFinder/nematode_gftables/zk637.intron5",
      "contrib/GeneFinder/nematode_gftables/zk637.trinuc",
      "contrib/README",
      "contrib/SynView/MAL11/MAL11.conf",
      "contrib/SynView/MAL11/MAL11.fa",
      "contrib/SynView/MAL11/MAL11.gff3",
      "contrib/SynView/README",
      "contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm",
      "contrib/SynView/cgi-lib/DAS/GUS/Segment.pm",
      "contrib/SynView/cgi-lib/DAS/GUS.pm",
      "contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm",
      "contrib/SynView/gbrowse.conf/plasmodb.conf",
      "contrib/SynView/gbrowse.conf/plasmodb.xml",
      "contrib/TextDumper/README",
      "contrib/TextDumper/TextDumper.pm",
      "contrib/ace2gff.pl",
      "contrib/blast2gff.pl",
      "contrib/conf_files/01.yeast.conf",
      "contrib/conf_files/02.wormbase.conf",
      "contrib/conf_files/03.fly.conf",
      "contrib/conf_files/04.human.conf",
      "contrib/conf_files/05.embl_proxy.conf",
      "contrib/conf_files/06.biosql.conf",
      "contrib/conf_files/07.chado.conf",
      "contrib/conf_files/08.genbank.conf",
      "contrib/conf_files/09.human_karyotype.conf",
      "contrib/conf_files/index.html",
      "contrib/conf_files/wormbase.syn",
      "contrib/gdump.pl",
      "contrib/import_ncbi_mv_hs.pl",
      "contrib/install_macosx/BuildConfig.pm",
      "contrib/install_macosx/README.html",
      "contrib/install_macosx/README.pod",
      "contrib/install_macosx/scripts/build-gbrowse.pl",
      "contrib/install_macosx/scripts/build-libraries.pl",
      "docs/Gbrowse_Color_Palette.pdf",
      "docs/README.AWS",
      "docs/README.tutorial",
      "docs/developer_notes/README.rearchitecture",
      "docs/developer_notes/README.sharing_tracks",
      "docs/example_remote_configs/volvox_local.conf",
      "docs/example_remote_configs/volvox_remote.conf",
      "docs/example_remote_configs/volvox_slave.conf",
      "docs/login.sql",
      "docs/pod/BIOSQL_ADAPTER_HOWTO.pod",
      "docs/pod/CONFIGURE_HOWTO.pod",
      "docs/pod/CONTROLLER.pod",
      "docs/pod/DAS_HOWTO.pod",
      "docs/pod/FAQ.pod",
      "docs/pod/GBROWSE_IMG.pod",
      "docs/pod/GENBANK_HOWTO.pod",
      "docs/pod/INSTALL.MacOSX.pod",
      "docs/pod/INSTALL.pod",
      "docs/pod/MAKE_IMAGES_HOWTO.pod",
      "docs/pod/ORACLE_AND_POSTGRESQL.pod",
      "docs/pod/PLUGINS_HOWTO.pod",
      "docs/pod/README-berkeley-gadfly.pod",
      "docs/pod/README-chado.pod",
      "docs/pod/README-gff-files.pod",
      "docs/pod/README-lucegene.pod",
      "etc/default/gbrowse-slave",
      "etc/init.d/gbrowse-slave",
      "htdocs/annotation_help.html",
      "htdocs/cloud_index.html",
      "htdocs/css/dropdown/default_theme.css",
      "htdocs/css/dropdown/dropdown.css",
      "htdocs/css/dropdown/helper.css",
      "htdocs/css/dropdown/images/favicon.ico",
      "htdocs/css/dropdown/images/icon.png",
      "htdocs/css/dropdown/images/nav-arrow-down-on.png",
      "htdocs/css/dropdown/images/nav-arrow-down-open.png",
      "htdocs/css/dropdown/images/nav-arrow-down.png",
      "htdocs/css/dropdown/images/nav-arrow-left-on.png",
      "htdocs/css/dropdown/images/nav-arrow-left-open.png",
      "htdocs/css/dropdown/images/nav-arrow-left.png",
      "htdocs/css/dropdown/images/nav-arrow-right-on.png",
      "htdocs/css/dropdown/images/nav-arrow-right-open.png",
      "htdocs/css/dropdown/images/nav-arrow-right.png",
      "htdocs/css/dropdown/images/nav-arrow-up-on.png",
      "htdocs/css/dropdown/images/nav-arrow-up-open.png",
      "htdocs/css/dropdown/images/nav-arrow-up.png",
      "htdocs/css/dropdown/images/pattern1.png",
      "htdocs/css/dropdown/images/pattern2.png",
      "htdocs/css/dropdown/images/pattern3.png",
      "htdocs/css/gbrowse.css",
      "htdocs/css/gbrowse_autocomplete.css",
      "htdocs/css/gbrowse_elements.css",
      "htdocs/css/gbrowse_solid.css",
      "htdocs/css/gbrowse_transparent.css",
      "htdocs/css/gbrowse_warm.css",
      "htdocs/css/karyotype.css",
      "htdocs/css/menulink.png",
      "htdocs/css/menulink_active.png",
      "htdocs/css/snapshots.css",
      "htdocs/css/subtracktable.css",
      "htdocs/css/titlebar-default.css",
      "htdocs/css/titlebar-safari.css",
      "htdocs/css/tracks.css",
      "htdocs/example_scripts/README",
      "htdocs/example_scripts/gbrowse_get_sessionid.pl",
      "htdocs/example_scripts/gbrowse_new_sessionid.pl",
      "htdocs/example_scripts/gbrowse_upload_data.pl",
      "htdocs/example_scripts/gbrowse_upload_file.pl",
      "htdocs/example_scripts/index.html",
      "htdocs/example_scripts/test_file.bed",
      "htdocs/gbrowse_karyotype_help.html",
      "htdocs/gbrowse_syn_help.html",
      "htdocs/general_help.html",
      "htdocs/general_help.html.zh",
      "htdocs/gmod_cog.jpeg",
      "htdocs/images/backgrounds/cloud.jpg",
      "htdocs/images/backgrounds/lrock005.jpg",
      "htdocs/images/backgrounds/steel.jpg",
      "htdocs/images/balloons/GBubble/balloon.png",
      "htdocs/images/balloons/GBubble/balloon_ie.png",
      "htdocs/images/balloons/GBubble/close.png",
      "htdocs/images/balloons/GBubble/down_left.png",
      "htdocs/images/balloons/GBubble/down_right.png",
      "htdocs/images/balloons/GBubble/up_left.png",
      "htdocs/images/balloons/GBubble/up_right.png",
      "htdocs/images/balloons/GPlain/balloon.png",
      "htdocs/images/balloons/GPlain/close.png",
      "htdocs/images/balloons/GPlain/down_left.png",
      "htdocs/images/balloons/GPlain/down_right.png",
      "htdocs/images/balloons/GPlain/up_left.png",
      "htdocs/images/balloons/GPlain/up_right.png",
      "htdocs/images/buttons/ajax-loader.gif",
      "htdocs/images/buttons/blue_peaks.png",
      "htdocs/images/buttons/check.png",
      "htdocs/images/buttons/cursor-ewmove.ico",
      "htdocs/images/buttons/dark_0.4_pixel.png",
      "htdocs/images/buttons/download.png",
      "htdocs/images/buttons/empty.png",
      "htdocs/images/buttons/ex.png",
      "htdocs/images/buttons/ficon.png",
      "htdocs/images/buttons/ficon_2.png",
      "htdocs/images/buttons/fmini.png",
      "htdocs/images/buttons/fmini_2.png",
      "htdocs/images/buttons/green.gif",
      "htdocs/images/buttons/green1.gif",
      "htdocs/images/buttons/green2.gif",
      "htdocs/images/buttons/green3.gif",
      "htdocs/images/buttons/green4.gif",
      "htdocs/images/buttons/green5.gif",
      "htdocs/images/buttons/green6.gif",
      "htdocs/images/buttons/green7.gif",
      "htdocs/images/buttons/green8.gif",
      "htdocs/images/buttons/green_l1.gif",
      "htdocs/images/buttons/green_l2.gif",
      "htdocs/images/buttons/green_r1.gif",
      "htdocs/images/buttons/green_r2.gif",
      "htdocs/images/buttons/grey.png",
      "htdocs/images/buttons/grey_0.4_pixel.png",
      "htdocs/images/buttons/menu.png",
      "htdocs/images/buttons/minus.gif",
      "htdocs/images/buttons/minus.png",
      "htdocs/images/buttons/minus12.png",
      "htdocs/images/buttons/mminus.png",
      "htdocs/images/buttons/mplus.gif",
      "htdocs/images/buttons/mplus.png",
      "htdocs/images/buttons/opacity_thumb.png",
      "htdocs/images/buttons/open_open.png",
      "htdocs/images/buttons/panleft.png",
      "htdocs/images/buttons/panleft2.png",
      "htdocs/images/buttons/panright.png",
      "htdocs/images/buttons/panright2.png",
      "htdocs/images/buttons/plus.gif",
      "htdocs/images/buttons/plus.png",
      "htdocs/images/buttons/query.png",
      "htdocs/images/buttons/red.gif",
      "htdocs/images/buttons/red1.gif",
      "htdocs/images/buttons/red2.gif",
      "htdocs/images/buttons/red3.gif",
      "htdocs/images/buttons/red4.gif",
      "htdocs/images/buttons/red5.gif",
      "htdocs/images/buttons/red6.gif",
      "htdocs/images/buttons/red7.gif",
      "htdocs/images/buttons/red8.gif",
      "htdocs/images/buttons/red_peaks.png",
      "htdocs/images/buttons/ruler-icon.png",
      "htdocs/images/buttons/ruler.png",
      "htdocs/images/buttons/share.png",
      "htdocs/images/buttons/snap_check.png",
      "htdocs/images/buttons/snap_down.png",
      "htdocs/images/buttons/snap_ex.png",
      "htdocs/images/buttons/snap_mail.png",
      "htdocs/images/buttons/snap_share.png",
      "htdocs/images/buttons/snap_trash.png",
      "htdocs/images/buttons/sortable.gif",
      "htdocs/images/buttons/sorted_down.gif",
      "htdocs/images/buttons/sorted_up.gif",
      "htdocs/images/buttons/spinner.gif",
      "htdocs/images/buttons/square.png",
      "htdocs/images/buttons/square.xpm",
      "htdocs/images/buttons/tools.png",
      "htdocs/images/buttons/trash.gif",
      "htdocs/images/buttons/trash.png",
      "htdocs/images/help/detail.gif",
      "htdocs/images/help/detail.png",
      "htdocs/images/help/detail_scale.gif",
      "htdocs/images/help/detail_scale.png",
      "htdocs/images/help/landmark.gif",
      "htdocs/images/help/landmark.png",
      "htdocs/images/help/multiple_hits.png",
      "htdocs/images/help/navbar.gif",
      "htdocs/images/help/navbar.png",
      "htdocs/images/help/numeric+data.gif",
      "htdocs/images/help/overview+detail.gif",
      "htdocs/images/help/overview+detail.png",
      "htdocs/images/help/overview.gif",
      "htdocs/images/help/remote.png",
      "htdocs/images/help/search+settings.gif",
      "htdocs/images/help/track+settings.gif",
      "htdocs/images/help/upload+edit.gif",
      "htdocs/images/help/upload+remote.gif",
      "htdocs/images/help/upload.gif",
      "htdocs/images/help/upload.png",
      "htdocs/images/help/upload_field.png",
      "htdocs/images/help/upload_list.png",
      "htdocs/images/help/worm_exons_spec.png",
      "htdocs/images/help/worm_telomeric_spec.png",
      "htdocs/images/help/yeast_I_genes_spec.png",
      "htdocs/images/openid/aim-logo.png",
      "htdocs/images/openid/blogspot-logo.png",
      "htdocs/images/openid/google-logo.gif",
      "htdocs/images/openid/livejournal-logo.png",
      "htdocs/images/openid/myopenid-logo.png",
      "htdocs/images/openid/openid-logo.gif",
      "htdocs/images/openid/yahoo-logo.png",
      "htdocs/index.html",
      "htdocs/js/GBox.js",
      "htdocs/js/ajax_upload.js",
      "htdocs/js/autocomplete.js",
      "htdocs/js/balloon.config.js",
      "htdocs/js/balloon.js",
      "htdocs/js/box.js",
      "htdocs/js/builder.js",
      "htdocs/js/buttons.js",
      "htdocs/js/controller.js",
      "htdocs/js/controls.js",
      "htdocs/js/detailSelect.js",
      "htdocs/js/dragdrop.js",
      "htdocs/js/effects.js",
      "htdocs/js/karyotype.js",
      "htdocs/js/login.js",
      "htdocs/js/menu.js",
      "htdocs/js/overviewSelect.js",
      "htdocs/js/prototype.js",
      "htdocs/js/regionSelect.js",
      "htdocs/js/rubber.js",
      "htdocs/js/ruler.js",
      "htdocs/js/scriptaculous.js",
      "htdocs/js/scrollfix.js",
      "htdocs/js/slider.js",
      "htdocs/js/snapshotManager.js",
      "htdocs/js/sound.js",
      "htdocs/js/subtracktable.css",
      "htdocs/js/subtracktable.js",
      "htdocs/js/tabs.js",
      "htdocs/js/track.js",
      "htdocs/js/trackFavorites.js",
      "htdocs/js/track_configure.js",
      "htdocs/js/track_pan.js",
      "htdocs/js/unittest.js",
      "htdocs/js/x_cook.js",
      "htdocs/tutorial/bin/expression_levels.pl",
      "htdocs/tutorial/bin/make_exon.pl",
      "htdocs/tutorial/bin/random_dna.pl",
      "htdocs/tutorial/bin/random_feature.pl",
      "htdocs/tutorial/bin/random_segments.pl",
      "htdocs/tutorial/bin/reformat.pl",
      "htdocs/tutorial/conf_files/HEADER.html",
      "htdocs/tutorial/conf_files/elegans_core.conf",
      "htdocs/tutorial/conf_files/elegans_extra.conf",
      "htdocs/tutorial/conf_files/volvox.conf",
      "htdocs/tutorial/conf_files/volvox_Phylo.conf",
      "htdocs/tutorial/conf_files/volvox_final.conf",
      "htdocs/tutorial/conf_files/volvox_final_withPhylo.conf",
      "htdocs/tutorial/conf_files/volvox_halfway.conf",
      "htdocs/tutorial/conf_files/volvox_quarter.conf",
      "htdocs/tutorial/conf_files/volvox_refactored.conf",
      "htdocs/tutorial/data_files/HEADER.html",
      "htdocs/tutorial/data_files/dog1_1700.wig",
      "htdocs/tutorial/data_files/elegans.fa",
      "htdocs/tutorial/data_files/elegans_acceptor.gff3",
      "htdocs/tutorial/data_files/elegans_core.gff3",
      "htdocs/tutorial/data_files/elegans_deletion.gff3",
      "htdocs/tutorial/data_files/elegans_expression.gff3",
      "htdocs/tutorial/data_files/elegans_extra.gff3",
      "htdocs/tutorial/data_files/elegans_repeats.gff3",
      "htdocs/tutorial/data_files/elegans_sts.gff3",
      "htdocs/tutorial/data_files/ests.fa",
      "htdocs/tutorial/data_files/species.tre",
      "htdocs/tutorial/data_files/volvox.fa",
      "htdocs/tutorial/data_files/volvox.gff3",
      "htdocs/tutorial/data_files/volvox_all.fa",
      "htdocs/tutorial/data_files/volvox_all.gff3",
      "htdocs/tutorial/data_files/volvox_array.gff3",
      "htdocs/tutorial/data_files/volvox_bacs.gff3",
      "htdocs/tutorial/data_files/volvox_domains.gff3",
      "htdocs/tutorial/data_files/volvox_est.gff3",
      "htdocs/tutorial/data_files/volvox_est_targets.gff3",
      "htdocs/tutorial/data_files/volvox_geneproducts.gff3",
      "htdocs/tutorial/data_files/volvox_genes.gff3",
      "htdocs/tutorial/data_files/volvox_genes_simple.gff3",
      "htdocs/tutorial/data_files/volvox_matches.gff3",
      "htdocs/tutorial/data_files/volvox_microarray.gff3",
      "htdocs/tutorial/data_files/volvox_microarray.wig",
      "htdocs/tutorial/data_files/volvox_phyloalign.fa",
      "htdocs/tutorial/data_files/volvox_phyloalign.gff3",
      "htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3",
      "htdocs/tutorial/data_files/volvox_remarks.gff3",
      "htdocs/tutorial/data_files/volvox_trace.gff3",
      "htdocs/tutorial/data_files/volvox_trace.scf",
      "htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff",
      "htdocs/tutorial/dbgff/data_files/elegans_core.gff",
      "htdocs/tutorial/dbgff/data_files/elegans_deletion.gff",
      "htdocs/tutorial/dbgff/data_files/elegans_expression.gff",
      "htdocs/tutorial/dbgff/data_files/elegans_extra.gff",
      "htdocs/tutorial/dbgff/data_files/elegans_repeats.gff",
      "htdocs/tutorial/dbgff/data_files/elegans_sts.gff",
      "htdocs/tutorial/dbgff/data_files/volvox1.gff",
      "htdocs/tutorial/dbgff/data_files/volvox2.gff",
      "htdocs/tutorial/dbgff/data_files/volvox3.gff",
      "htdocs/tutorial/dbgff/data_files/volvox4.gff",
      "htdocs/tutorial/dbgff/data_files/volvox4a.gff",
      "htdocs/tutorial/dbgff/data_files/volvox4b.gff",
      "htdocs/tutorial/dbgff/data_files/volvox5.gff",
      "htdocs/tutorial/dbgff/data_files/volvox6.gff",
      "htdocs/tutorial/dbgff/data_files/volvox7.gff",
      "htdocs/tutorial/dbgff/data_files/volvox8.gff",
      "htdocs/tutorial/dbgff/data_files/volvox9.gff",
      "htdocs/tutorial/dbgff/data_files/volvox_all.gff",
      "htdocs/tutorial/figures/DAS1.gif",
      "htdocs/tutorial/figures/adding_dna_to_alignments1.gif",
      "htdocs/tutorial/figures/aliases.gif",
      "htdocs/tutorial/figures/basic_conf1.gif",
      "htdocs/tutorial/figures/basic_conf2.gif",
      "htdocs/tutorial/figures/basics1.gif",
      "htdocs/tutorial/figures/canonical_gene1.gif",
      "htdocs/tutorial/figures/canonical_gene2.gif",
      "htdocs/tutorial/figures/canonical_gene3.gif",
      "htdocs/tutorial/figures/categorytable.png",
      "htdocs/tutorial/figures/cds1.gif",
      "htdocs/tutorial/figures/config_editing.png",
      "htdocs/tutorial/figures/custom_aggregators1.gif",
      "htdocs/tutorial/figures/descriptions1.gif",
      "htdocs/tutorial/figures/dna1.gif",
      "htdocs/tutorial/figures/dna1.png",
      "htdocs/tutorial/figures/dna2.gif",
      "htdocs/tutorial/figures/dna2.png",
      "htdocs/tutorial/figures/enhancements1.gif",
      "htdocs/tutorial/figures/enhancements2.gif",
      "htdocs/tutorial/figures/enhancements3.gif",
      "htdocs/tutorial/figures/figure1.gif",
      "htdocs/tutorial/figures/figure10.gif",
      "htdocs/tutorial/figures/figure11.gif",
      "htdocs/tutorial/figures/figure12.gif",
      "htdocs/tutorial/figures/figure13a.gif",
      "htdocs/tutorial/figures/figure13b.gif",
      "htdocs/tutorial/figures/figure14.gif",
      "htdocs/tutorial/figures/figure15.gif",
      "htdocs/tutorial/figures/figure16.gif",
      "htdocs/tutorial/figures/figure17.gif",
      "htdocs/tutorial/figures/figure18.gif",
      "htdocs/tutorial/figures/figure19.gif",
      "htdocs/tutorial/figures/figure2.gif",
      "htdocs/tutorial/figures/figure20.gif",
      "htdocs/tutorial/figures/figure21.gif",
      "htdocs/tutorial/figures/figure22.gif",
      "htdocs/tutorial/figures/figure23.gif",
      "htdocs/tutorial/figures/figure24.gif",
      "htdocs/tutorial/figures/figure25.gif",
      "htdocs/tutorial/figures/figure26.gif",
      "htdocs/tutorial/figures/figure27.gif",
      "htdocs/tutorial/figures/figure28.gif",
      "htdocs/tutorial/figures/figure29.gif",
      "htdocs/tutorial/figures/figure3.gif",
      "htdocs/tutorial/figures/figure30.gif",
      "htdocs/tutorial/figures/figure4.gif",
      "htdocs/tutorial/figures/figure5.gif",
      "htdocs/tutorial/figures/figure6.gif",
      "htdocs/tutorial/figures/figure7.gif",
      "htdocs/tutorial/figures/figure7a.gif",
      "htdocs/tutorial/figures/figure7b.gif",
      "htdocs/tutorial/figures/figure8.gif",
      "htdocs/tutorial/figures/figure9.gif",
      "htdocs/tutorial/figures/graph1.gif",
      "htdocs/tutorial/figures/multiple_alignments1.gif",
      "htdocs/tutorial/figures/multiple_alignments2.gif",
      "htdocs/tutorial/figures/multiple_alignments3.gif",
      "htdocs/tutorial/figures/overview1.gif",
      "htdocs/tutorial/figures/phylo_align1.gif",
      "htdocs/tutorial/figures/phylo_align2.gif",
      "htdocs/tutorial/figures/phylo_align3.gif",
      "htdocs/tutorial/figures/plugins1.gif",
      "htdocs/tutorial/figures/plugins2.gif",
      "htdocs/tutorial/figures/predicted_genes.gif",
      "htdocs/tutorial/figures/segmented_features1.gif",
      "htdocs/tutorial/figures/segmented_features2.gif",
      "htdocs/tutorial/figures/semantic_zooming1.gif",
      "htdocs/tutorial/figures/setting_popup.png",
      "htdocs/tutorial/figures/third_party1.gif",
      "htdocs/tutorial/figures/third_party2.gif",
      "htdocs/tutorial/figures/third_party3.gif",
      "htdocs/tutorial/figures/third_party4.gif",
      "htdocs/tutorial/figures/third_party5.gif",
      "htdocs/tutorial/figures/trace1.png",
      "htdocs/tutorial/figures/trace2.png",
      "htdocs/tutorial/figures/wiggle_density.gif",
      "htdocs/tutorial/figures/wiggle_density.png",
      "htdocs/tutorial/tutorial.css",
      "htdocs/tutorial/tutorial.html",
      "htdocs/tutorial/tutorial.phyTreeEdit.html",
      "htdocs/vbox_index.html",
      "install_util/GBrowseGuessDirectories.pm",
      "install_util/GBrowseInstall.pm",
      "install_util/InstallUtil.pm",
      "install_util/cgi_install.pl",
      "install_util/conf_install.pl",
      "install_util/gbrowse_ppm_install.pl",
      "install_util/htdocs_install.pl",
      "install_util/make_clean_add.pl",
      "install_util/pod2docs.pl",
      "install_util/sync-bioperl.sh",
      "install_util/tag.pl",
      "lib/Bio/DB/GFF/Aggregator/match_gap.pm",
      "lib/Bio/DB/GFF/Aggregator/reftranscript.pm",
      "lib/Bio/DB/GFF/Aggregator/waba_alignment.pm",
      "lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm",
      "lib/Bio/DB/SeqFeature/Store/Alias.pm",
      "lib/Bio/DB/SeqFeature/Store/BedLoader.pm",
      "lib/Bio/DB/Tagger/Tag.pm",
      "lib/Bio/DB/Tagger/mysql.pm",
      "lib/Bio/DB/Tagger.pm",
      "lib/Bio/Graphics/Browser2/Action.pm",
      "lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm",
      "lib/Bio/Graphics/Browser2/CAlign.pm",
      "lib/Bio/Graphics/Browser2/CAlign.xs",
      "lib/Bio/Graphics/Browser2/CachedTrack.pm",
      "lib/Bio/Graphics/Browser2/DataBase.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/bam.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/bed.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/bigwig.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/generic.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/gff.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/gff3.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/sam.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm",
      "lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm",
      "lib/Bio/Graphics/Browser2/DataLoader.pm",
      "lib/Bio/Graphics/Browser2/DataSource.pm",
      "lib/Bio/Graphics/Browser2/ExternalData.pm",
      "lib/Bio/Graphics/Browser2/GFFhelper.pm",
      "lib/Bio/Graphics/Browser2/I18n.pm",
      "lib/Bio/Graphics/Browser2/Markup.pm",
      "lib/Bio/Graphics/Browser2/OptionPick.pm",
      "lib/Bio/Graphics/Browser2/PadAlignment.pm",
      "lib/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm",
      "lib/Bio/Graphics/Browser2/Plugin.pm",
      "lib/Bio/Graphics/Browser2/PluginSet.pm",
      "lib/Bio/Graphics/Browser2/Realign.pm",
      "lib/Bio/Graphics/Browser2/Region.pm",
      "lib/Bio/Graphics/Browser2/RegionSearch.pm",
      "lib/Bio/Graphics/Browser2/RemoteSet.pm",
      "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm",
      "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm",
      "lib/Bio/Graphics/Browser2/Render/HTML.pm",
      "lib/Bio/Graphics/Browser2/Render/Login.pm",
      "lib/Bio/Graphics/Browser2/Render/Slave/Status.pm",
      "lib/Bio/Graphics/Browser2/Render/Slave.pm",
      "lib/Bio/Graphics/Browser2/Render/SnapshotManager.pm",
      "lib/Bio/Graphics/Browser2/Render/TrackConfig.pm",
      "lib/Bio/Graphics/Browser2/Render.pm",
      "lib/Bio/Graphics/Browser2/RenderPanels.pm",
      "lib/Bio/Graphics/Browser2/SendMail.pm",
      "lib/Bio/Graphics/Browser2/Session.pm",
      "lib/Bio/Graphics/Browser2/Shellwords.pm",
      "lib/Bio/Graphics/Browser2/SubtrackTable.pm",
      "lib/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm",
      "lib/Bio/Graphics/Browser2/TrackDumper.pm",
      "lib/Bio/Graphics/Browser2/UserDB.pm",
      "lib/Bio/Graphics/Browser2/UserTracks/Database.pm",
      "lib/Bio/Graphics/Browser2/UserTracks/Filesystem.pm",
      "lib/Bio/Graphics/Browser2/UserTracks.pm",
      "lib/Bio/Graphics/Browser2/Util.pm",
      "lib/Bio/Graphics/Browser2.pm",
      "lib/Bio/Graphics/GBrowseFeature.pm",
      "lib/Bio/Graphics/Karyotype.pm",
      "lib/CGI/Toggle.pm",
      "lib/Legacy/DB/SyntenyBlock.pm",
      "lib/Legacy/DB/SyntenyIO.pm",
      "lib/Legacy/Graphics/Browser/I18n.pm",
      "lib/Legacy/Graphics/Browser/PageSettings.pm",
      "lib/Legacy/Graphics/Browser/Synteny.pm",
      "lib/Legacy/Graphics/Browser/Util.pm",
      "lib/Legacy/Graphics/Browser.pm",
      "libalign/CAlign.pm",
      "libalign/CAlign.xs",
      "libalign/Changes",
      "libalign/README",
      "libalign/realign.h",
      "sample_data/admin_uploads/README",
      "sample_data/gbrowse_syn/alignments/rice.aln.gz",
      "sample_data/gbrowse_syn/rice/rice.gff3",
      "sample_data/gbrowse_syn/wild_rice/wild_rice.gff3",
      "sample_data/ideograms/human_cytobands.gff",
      "sample_data/ideograms/mouse_cytobands.gff",
      "sample_data/ideograms/rat_cytobands.gff",
      "sample_data/pop_demo/pop_demo.gff3",
      "sample_data/yeast_chr1+2/yeast_chr1+2.gff3",
      "sample_data/yeast_scaffolds/chr1.fa",
      "sample_data/yeast_scaffolds/chr2.fa",
      "sample_data/yeast_scaffolds/chromosomes.gff3",
      "t/00.compile.t",
      "t/01.yeast.t",
      "t/02.rearchitecture.t",
      "t/03.render.t",
      "t/04.remoteserver.t",
      "t/05.deferredrendering.t",
      "t/06.featuresearch.t",
      "t/07.karyotype.t",
      "t/08.calign.t",
      "t/Test.pm",
      "t/testdata/TemplateCopy.pm",
      "t/testdata/conf/GBrowse.conf",
      "t/testdata/conf/WHERE_ARE_THE_CONF_FILES.txt",
      "t/testdata/conf/enzymes.txt",
      "t/testdata/conf/languages/POSIX.pm",
      "t/testdata/conf/languages/fr.pm",
      "t/testdata/conf/templates/volvox_final.conf",
      "t/testdata/conf/templates/yeast_chr1.conf",
      "t/testdata/data/volvox/volvox.gff",
      "t/testdata/data/volvox2/volvox2.gff",
      "t/testdata/data/volvox3/volvox3.gff",
      "t/testdata/data/volvox4/volvox4.gff",
      "t/testdata/phylo_align/phyloalign.fa",
      "t/testdata/phylo_align/readme.txt",
      "t/testdata/phylo_align/species.tre",
      "t/testdata/phylo_align/volvox_alignment.conf",
      "t/testdata/phylo_align/volvox_phyloalign.gff"
   ],
   "files_hash" : {
      "Build.PL" : {
         "mtime" : 1347937120,
         "size" : 4607,
         "used" : [
            "File::Copy",
            "FindBin",
            "GBrowseInstall",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "Changes" : {
         "mtime" : 1347937121,
         "size" : 50919
      },
      "DISCLAIMER" : {
         "mtime" : 1347937120,
         "size" : 1402
      },
      "INSTALL" : {
         "mtime" : 1347937121,
         "size" : 34450
      },
      "LICENSE" : {
         "mtime" : 1347937119,
         "size" : 24086
      },
      "MANIFEST" : {
         "mtime" : 1347937121,
         "size" : 23378
      },
      "META.json" : {
         "mtime" : 1347937121,
         "size" : 13998
      },
      "META.yml" : {
         "mtime" : 1347937121,
         "size" : 9926
      },
      "Makefile.PL" : {
         "mtime" : 1347937119,
         "required" : [
            "5.008",
            "CPAN",
            "Cwd",
            "ExtUtils::MakeMaker",
            "File::Spec",
            "GBrowseInstall"
         ],
         "size" : 1243,
         "used" : [
            "lib"
         ],
         "used_in_eval" : [
            "Module::Build::Compat"
         ]
      },
      "README" : {
         "mtime" : 1347937121,
         "size" : 6022
      },
      "README.IF.GBROWSE.ISNT.WORKING" : {
         "mtime" : 1347937119,
         "size" : 563
      },
      "README.fedora_and_selinux" : {
         "mtime" : 1347937120,
         "size" : 1458
      },
      "README.gff3" : {
         "mtime" : 1347937118,
         "size" : 4559
      },
      "bin/auto_install_databases.pl" : {
         "mtime" : 1347937119,
         "size" : 7905
      },
      "bin/bed2gff3.pl" : {
         "mtime" : 1347937119,
         "size" : 8204
      },
      "bin/bp_load_gff.pl" : {
         "mtime" : 1347937121,
         "size" : 5453
      },
      "bin/gbrowse_change_passwd.pl" : {
         "mtime" : 1347937119,
         "size" : 1550
      },
      "bin/gbrowse_clean.pl" : {
         "mtime" : 1347937119,
         "size" : 8295
      },
      "bin/gbrowse_create_account.pl" : {
         "mtime" : 1347937120,
         "size" : 3052
      },
      "bin/gbrowse_grow_cloud_vol.pl" : {
         "mtime" : 1347937119,
         "size" : 4722
      },
      "bin/gbrowse_import_ucsc_db.pl" : {
         "mtime" : 1347937121,
         "size" : 20958
      },
      "bin/gbrowse_metadb_config.pl" : {
         "mtime" : 1347937121,
         "size" : 33334
      },
      "bin/gbrowse_netinstall.pl" : {
         "mtime" : 1347937121,
         "size" : 17137
      },
      "bin/gbrowse_netinstall2.pl" : {
         "mtime" : 1347937121,
         "size" : 15025
      },
      "bin/gbrowse_set_admin_passwd.pl" : {
         "mtime" : 1347937121,
         "size" : 2514
      },
      "bin/gbrowse_slave" : {
         "mtime" : 1347937120,
         "size" : 3184
      },
      "bin/gbrowse_syn_load_alignment_database.pl" : {
         "mtime" : 1347937119,
         "size" : 5352
      },
      "bin/gbrowse_syn_load_alignments_msa.pl" : {
         "mtime" : 1347937120,
         "size" : 9764
      },
      "bin/gtf2gff3.pl" : {
         "license" : "Perl_5",
         "mtime" : 1347937118,
         "size" : 46967
      },
      "bin/load_genbank.pl" : {
         "mtime" : 1347937121,
         "size" : 6078
      },
      "bin/make_das_conf.pl" : {
         "mtime" : 1347937120,
         "size" : 6409
      },
      "bin/process_bamfiles.pl" : {
         "mtime" : 1347937121,
         "size" : 10661
      },
      "bin/process_gadfly.pl" : {
         "mtime" : 1347937119,
         "size" : 7073
      },
      "bin/process_ncbi_human.pl" : {
         "mtime" : 1347937120,
         "size" : 15431
      },
      "bin/process_sgd.pl" : {
         "mtime" : 1347937120,
         "size" : 3727
      },
      "bin/report_missing_language_tags.pl" : {
         "mtime" : 1347937118,
         "size" : 490
      },
      "bin/scan_gbrowse.pl" : {
         "mtime" : 1347937121,
         "size" : 2533
      },
      "bin/ucsc_genes2gff.pl" : {
         "mtime" : 1347937119,
         "size" : 8081
      },
      "bin/wiggle2gff3.pl" : {
         "mtime" : 1347937120,
         "size" : 8516
      },
      "cgi-bin/das" : {
         "mtime" : 1347937119,
         "size" : 37696
      },
      "cgi-bin/gbgff" : {
         "mtime" : 1347937118,
         "size" : 1837
      },
      "cgi-bin/gbrowse" : {
         "mtime" : 1347937119,
         "size" : 1198
      },
      "cgi-bin/gbrowse_details" : {
         "mtime" : 1347937118,
         "size" : 21247
      },
      "cgi-bin/gbrowse_gmap" : {
         "mtime" : 1347937120,
         "size" : 21646
      },
      "cgi-bin/gbrowse_img" : {
         "mtime" : 1347937118,
         "size" : 28581
      },
      "cgi-bin/gbrowse_key_img" : {
         "mtime" : 1347937121,
         "size" : 15435
      },
      "cgi-bin/gbrowse_login" : {
         "mtime" : 1347937120,
         "size" : 3389
      },
      "cgi-bin/gbrowse_syn" : {
         "mtime" : 1347937118,
         "size" : 54843
      },
      "conf/GBrowse.conf" : {
         "mtime" : 1347937120,
         "size" : 8759
      },
      "conf/MobyServices/GbrowseServices.PMS" : {
         "mtime" : 1347937120,
         "size" : 24426
      },
      "conf/MobyServices/GbrowseServices.pm" : {
         "mtime" : 1347937120,
         "size" : 23494
      },
      "conf/MobyServices/b64_encoded_gif_renderer.pm" : {
         "mtime" : 1347937119,
         "size" : 3226
      },
      "conf/MobyServices/b64_encoded_jpeg_renderer.pm" : {
         "mtime" : 1347937120,
         "size" : 3234
      },
      "conf/MobyServices/moby.conf" : {
         "mtime" : 1347937121,
         "size" : 1840
      },
      "conf/MobyServices/text_formatted_renderer.pm" : {
         "mtime" : 1347937121,
         "size" : 3191
      },
      "conf/MobyServices/text_html_renderer.pm" : {
         "mtime" : 1347937121,
         "size" : 2963
      },
      "conf/MobyServices/text_plain_renderer.pm" : {
         "mtime" : 1347937119,
         "size" : 3791
      },
      "conf/MobyServices/text_xml_renderer.pm" : {
         "mtime" : 1347937120,
         "size" : 3314
      },
      "conf/detail_select_menu.conf" : {
         "mtime" : 1347937118,
         "size" : 1636
      },
      "conf/enzymes.txt" : {
         "mtime" : 1347937119,
         "size" : 2711
      },
      "conf/languages/POSIX.pm" : {
         "mtime" : 1347937121,
         "size" : 29191
      },
      "conf/languages/de.pm" : {
         "mtime" : 1347937118,
         "size" : 10468
      },
      "conf/languages/en.pm" : {
         "mtime" : 1347937121,
         "size" : 29191
      },
      "conf/languages/es.pm" : {
         "mtime" : 1347937121,
         "size" : 10812
      },
      "conf/languages/fr.pm" : {
         "mtime" : 1347937119,
         "size" : 10605
      },
      "conf/languages/is.pm" : {
         "mtime" : 1347937121,
         "size" : 9741
      },
      "conf/languages/it.pm" : {
         "mtime" : 1347937118,
         "size" : 10013
      },
      "conf/languages/ja.pm" : {
         "mtime" : 1347937120,
         "size" : 10134
      },
      "conf/languages/ko.pm" : {
         "mtime" : 1347937118,
         "size" : 8951
      },
      "conf/languages/nl.pm" : {
         "mtime" : 1347937121,
         "size" : 10063
      },
      "conf/languages/pl.pm" : {
         "mtime" : 1347937121,
         "size" : 9941
      },
      "conf/languages/ru.pm" : {
         "mtime" : 1347937121,
         "size" : 10212
      },
      "conf/languages/zh.pm" : {
         "mtime" : 1347937121,
         "size" : 7423
      },
      "conf/languages/zh_cn.pm" : {
         "mtime" : 1347937121,
         "size" : 8069
      },
      "conf/log4perl.conf" : {
         "mtime" : 1347937119,
         "size" : 1398
      },
      "conf/plugins/AlignTwoSequences.pm" : {
         "mtime" : 1347937118,
         "size" : 7680
      },
      "conf/plugins/Aligner.pm" : {
         "mtime" : 1347937119,
         "size" : 13442
      },
      "conf/plugins/AttributeHiliter.pm" : {
         "mtime" : 1347937121,
         "size" : 5208
      },
      "conf/plugins/BatchDumper.pm" : {
         "mtime" : 1347937121,
         "size" : 7981
      },
      "conf/plugins/Blat.pm" : {
         "mtime" : 1347937119,
         "size" : 5608
      },
      "conf/plugins/CMapDumper.pm" : {
         "mtime" : 1347937120,
         "size" : 6828
      },
      "conf/plugins/CreateBlastDB.pm" : {
         "mtime" : 1347937120,
         "size" : 3678
      },
      "conf/plugins/FBTableDumper.pm" : {
         "mtime" : 1347937120,
         "size" : 3351
      },
      "conf/plugins/FastaDumper.pm" : {
         "mtime" : 1347937122,
         "size" : 8691
      },
      "conf/plugins/FilterTest.pm" : {
         "mtime" : 1347937121,
         "size" : 3577
      },
      "conf/plugins/GeneFinder.pm" : {
         "mtime" : 1347937118,
         "size" : 4198
      },
      "conf/plugins/LDAPAuthenticate.pm" : {
         "mtime" : 1347937118,
         "size" : 5635
      },
      "conf/plugins/OligoFinder.pm" : {
         "mtime" : 1347937119,
         "size" : 4930
      },
      "conf/plugins/PamAuthenticate.pm" : {
         "mtime" : 1347937119,
         "size" : 1855
      },
      "conf/plugins/PrimerDesigner.pm" : {
         "mtime" : 1347937118,
         "size" : 56358
      },
      "conf/plugins/ProteinDumper.pm" : {
         "mtime" : 1347937119,
         "size" : 8711
      },
      "conf/plugins/RandomGene.pm" : {
         "mtime" : 1347937119,
         "size" : 3364
      },
      "conf/plugins/RestrictionAnnotator.pm" : {
         "mtime" : 1347937119,
         "size" : 4852
      },
      "conf/plugins/SequenceDumper.pm" : {
         "mtime" : 1347937119,
         "size" : 6718
      },
      "conf/plugins/SimpleTrackFinder.pm" : {
         "mtime" : 1347937121,
         "size" : 2722
      },
      "conf/plugins/SinWave.pm" : {
         "mtime" : 1347937120,
         "size" : 2497
      },
      "conf/plugins/SourceTrackFinder.pm" : {
         "mtime" : 1347937121,
         "size" : 4404
      },
      "conf/plugins/Spectrogram.pm" : {
         "mtime" : 1347937120,
         "size" : 18287
      },
      "conf/plugins/Submitter.pm" : {
         "mtime" : 1347937120,
         "size" : 5363
      },
      "conf/plugins/TestAuthenticator.pm" : {
         "mtime" : 1347937119,
         "size" : 454
      },
      "conf/plugins/TestFinder.pm" : {
         "mtime" : 1347937120,
         "size" : 573
      },
      "conf/plugins/TrackDumper.pm" : {
         "mtime" : 1347937118,
         "size" : 6910
      },
      "conf/plugins/TrackFinder.pm" : {
         "mtime" : 1347937120,
         "size" : 4461
      },
      "conf/plugins/test.pm" : {
         "mtime" : 1347937120,
         "size" : 608
      },
      "conf/pop_demo.conf" : {
         "mtime" : 1347937121,
         "size" : 3280
      },
      "conf/slave_preload.conf" : {
         "mtime" : 1347937121,
         "size" : 294
      },
      "conf/submitter_plugin.conf" : {
         "mtime" : 1347937120,
         "size" : 1822
      },
      "conf/synteny/oryza.synconf.disabled" : {
         "mtime" : 1347937121,
         "size" : 1369
      },
      "conf/synteny/rice_synteny.conf" : {
         "mtime" : 1347937119,
         "size" : 507
      },
      "conf/synteny/wild_rice_synteny.conf" : {
         "mtime" : 1347937119,
         "size" : 686
      },
      "conf/themes/solid_gray_colors" : {
         "mtime" : 1347937120,
         "size" : 257
      },
      "conf/themes/transparent_colors" : {
         "mtime" : 1347937121,
         "size" : 346
      },
      "conf/themes/warm_colors" : {
         "mtime" : 1347937120,
         "size" : 251
      },
      "conf/volvox.conf" : {
         "mtime" : 1347937120,
         "size" : 1086
      },
      "conf/yeast_chr1+2.conf" : {
         "mtime" : 1347937121,
         "size" : 7445
      },
      "conf/yeast_renderfarm.conf" : {
         "mtime" : 1347937120,
         "size" : 7295
      },
      "conf/yeast_simple.conf" : {
         "mtime" : 1347937120,
         "size" : 4194
      },
      "contrib/AxtPairwise_convert/axt2phy.pl" : {
         "mtime" : 1347937119,
         "size" : 8817
      },
      "contrib/Coverage/INSTALL" : {
         "mtime" : 1347937119,
         "size" : 629
      },
      "contrib/Coverage/README" : {
         "mtime" : 1347937121,
         "size" : 55
      },
      "contrib/Coverage/plugin/Coverage.pm" : {
         "mtime" : 1347937121,
         "size" : 9138
      },
      "contrib/GeneFinder/genefinder/README" : {
         "mtime" : 1347937118,
         "size" : 1276
      },
      "contrib/GeneFinder/genefinder/gfcode.c" : {
         "mtime" : 1347937119,
         "size" : 37334
      },
      "contrib/GeneFinder/genefinder/readseq.c" : {
         "mtime" : 1347937121,
         "size" : 10877
      },
      "contrib/GeneFinder/genefinder/readseq.h" : {
         "mtime" : 1347937121,
         "size" : 869
      },
      "contrib/GeneFinder/nematode_gftables/cds.hex" : {
         "mtime" : 1347937121,
         "size" : 33024
      },
      "contrib/GeneFinder/nematode_gftables/gftables" : {
         "mtime" : 1347937119,
         "size" : 170
      },
      "contrib/GeneFinder/nematode_gftables/newnem.atg" : {
         "mtime" : 1347937120,
         "size" : 856
      },
      "contrib/GeneFinder/nematode_gftables/newnem.codon" : {
         "mtime" : 1347937119,
         "size" : 1469
      },
      "contrib/GeneFinder/nematode_gftables/newnem.gene" : {
         "mtime" : 1347937121,
         "size" : 4489
      },
      "contrib/GeneFinder/nematode_gftables/newnem.intron3" : {
         "mtime" : 1347937121,
         "size" : 1212
      },
      "contrib/GeneFinder/nematode_gftables/newnem.intron5" : {
         "mtime" : 1347937119,
         "size" : 1210
      },
      "contrib/GeneFinder/nematode_gftables/ref.hist" : {
         "mtime" : 1347937121,
         "size" : 121535
      },
      "contrib/GeneFinder/nematode_gftables/zk637.atg" : {
         "mtime" : 1347937121,
         "size" : 853
      },
      "contrib/GeneFinder/nematode_gftables/zk637.intron3" : {
         "mtime" : 1347937121,
         "size" : 1160
      },
      "contrib/GeneFinder/nematode_gftables/zk637.intron5" : {
         "mtime" : 1347937121,
         "size" : 1158
      },
      "contrib/GeneFinder/nematode_gftables/zk637.trinuc" : {
         "mtime" : 1347937120,
         "size" : 1089
      },
      "contrib/README" : {
         "mtime" : 1347937119,
         "size" : 1149
      },
      "contrib/SynView/MAL11/MAL11.conf" : {
         "mtime" : 1347937120,
         "size" : 5148
      },
      "contrib/SynView/MAL11/MAL11.fa" : {
         "mtime" : 1347937118,
         "size" : 2069179
      },
      "contrib/SynView/MAL11/MAL11.gff3" : {
         "mtime" : 1347937119,
         "size" : 11596
      },
      "contrib/SynView/README" : {
         "mtime" : 1347937120,
         "size" : 1655
      },
      "contrib/SynView/cgi-lib/DAS/GUS.pm" : {
         "mtime" : 1347937121,
         "size" : 9271
      },
      "contrib/SynView/cgi-lib/DAS/GUS/Segment.pm" : {
         "mtime" : 1347937121,
         "size" : 19952
      },
      "contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm" : {
         "mtime" : 1347937119,
         "size" : 26327
      },
      "contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm" : {
         "mtime" : 1347937120,
         "size" : 880
      },
      "contrib/SynView/gbrowse.conf/plasmodb.conf" : {
         "mtime" : 1347937120,
         "size" : 25736
      },
      "contrib/SynView/gbrowse.conf/plasmodb.xml" : {
         "mtime" : 1347937119,
         "size" : 72509
      },
      "contrib/TextDumper/README" : {
         "mtime" : 1347937119,
         "size" : 738
      },
      "contrib/TextDumper/TextDumper.pm" : {
         "mtime" : 1347937121,
         "size" : 3098
      },
      "contrib/ace2gff.pl" : {
         "mtime" : 1347937118,
         "size" : 5198
      },
      "contrib/blast2gff.pl" : {
         "mtime" : 1347937121,
         "size" : 10167
      },
      "contrib/conf_files/01.yeast.conf" : {
         "mtime" : 1347937119,
         "size" : 4826
      },
      "contrib/conf_files/02.wormbase.conf" : {
         "mtime" : 1347937119,
         "size" : 31814
      },
      "contrib/conf_files/03.fly.conf" : {
         "mtime" : 1347937121,
         "size" : 36470
      },
      "contrib/conf_files/04.human.conf" : {
         "mtime" : 1347937120,
         "size" : 5466
      },
      "contrib/conf_files/05.embl_proxy.conf" : {
         "mtime" : 1347937120,
         "size" : 3062
      },
      "contrib/conf_files/06.biosql.conf" : {
         "mtime" : 1347937120,
         "size" : 4057
      },
      "contrib/conf_files/07.chado.conf" : {
         "mtime" : 1347937121,
         "size" : 2216
      },
      "contrib/conf_files/08.genbank.conf" : {
         "mtime" : 1347937121,
         "size" : 3668
      },
      "contrib/conf_files/09.human_karyotype.conf" : {
         "mtime" : 1347937119,
         "size" : 930
      },
      "contrib/conf_files/index.html" : {
         "mtime" : 1347937120,
         "size" : 1817
      },
      "contrib/conf_files/wormbase.syn" : {
         "mtime" : 1347937120,
         "size" : 152
      },
      "contrib/gdump.pl" : {
         "mtime" : 1347937119,
         "size" : 13154
      },
      "contrib/import_ncbi_mv_hs.pl" : {
         "mtime" : 1347937120,
         "size" : 13464
      },
      "contrib/install_macosx/BuildConfig.pm" : {
         "mtime" : 1347937121,
         "size" : 9295
      },
      "contrib/install_macosx/README.html" : {
         "mtime" : 1347937120,
         "size" : 2977
      },
      "contrib/install_macosx/README.pod" : {
         "mtime" : 1347937120,
         "size" : 1547
      },
      "contrib/install_macosx/scripts/build-gbrowse.pl" : {
         "mtime" : 1347937121,
         "size" : 5987
      },
      "contrib/install_macosx/scripts/build-libraries.pl" : {
         "mtime" : 1347937121,
         "size" : 17864
      },
      "docs/Gbrowse_Color_Palette.pdf" : {
         "mtime" : 1347937121,
         "size" : 55262
      },
      "docs/README.AWS" : {
         "mtime" : 1347937120,
         "size" : 5712
      },
      "docs/README.tutorial" : {
         "mtime" : 1347937119,
         "size" : 123
      },
      "docs/developer_notes/README.rearchitecture" : {
         "mtime" : 1347937121,
         "size" : 9020
      },
      "docs/developer_notes/README.sharing_tracks" : {
         "mtime" : 1347937121,
         "size" : 10772
      },
      "docs/example_remote_configs/volvox_local.conf" : {
         "mtime" : 1347937119,
         "size" : 7485
      },
      "docs/example_remote_configs/volvox_remote.conf" : {
         "mtime" : 1347937120,
         "size" : 7245
      },
      "docs/example_remote_configs/volvox_slave.conf" : {
         "mtime" : 1347937120,
         "size" : 7259
      },
      "docs/login.sql" : {
         "mtime" : 1347937121,
         "size" : 2172
      },
      "docs/pod/BIOSQL_ADAPTER_HOWTO.pod" : {
         "mtime" : 1347937119,
         "size" : 2306
      },
      "docs/pod/CONFIGURE_HOWTO.pod" : {
         "mtime" : 1347937120,
         "size" : 119184
      },
      "docs/pod/CONTROLLER.pod" : {
         "mtime" : 1347937120,
         "size" : 19524
      },
      "docs/pod/DAS_HOWTO.pod" : {
         "mtime" : 1347937121,
         "size" : 6775
      },
      "docs/pod/FAQ.pod" : {
         "mtime" : 1347937119,
         "size" : 7216
      },
      "docs/pod/GBROWSE_IMG.pod" : {
         "mtime" : 1347937118,
         "size" : 9664
      },
      "docs/pod/GENBANK_HOWTO.pod" : {
         "mtime" : 1347937121,
         "size" : 3818
      },
      "docs/pod/INSTALL.MacOSX.pod" : {
         "mtime" : 1347937118,
         "size" : 18253
      },
      "docs/pod/INSTALL.pod" : {
         "mtime" : 1347937121,
         "size" : 32132
      },
      "docs/pod/MAKE_IMAGES_HOWTO.pod" : {
         "mtime" : 1347937119,
         "size" : 9774
      },
      "docs/pod/ORACLE_AND_POSTGRESQL.pod" : {
         "mtime" : 1347937122,
         "size" : 5518
      },
      "docs/pod/PLUGINS_HOWTO.pod" : {
         "mtime" : 1347937121,
         "size" : 19903
      },
      "docs/pod/README-berkeley-gadfly.pod" : {
         "mtime" : 1347937120,
         "size" : 655
      },
      "docs/pod/README-chado.pod" : {
         "mtime" : 1347937121,
         "size" : 4485
      },
      "docs/pod/README-gff-files.pod" : {
         "mtime" : 1347937118,
         "size" : 4328
      },
      "docs/pod/README-lucegene.pod" : {
         "mtime" : 1347937121,
         "size" : 5135
      },
      "etc/default/gbrowse-slave" : {
         "mtime" : 1347937122,
         "size" : 220
      },
      "etc/init.d/gbrowse-slave" : {
         "mtime" : 1347937119,
         "size" : 2442
      },
      "htdocs/annotation_help.html" : {
         "mtime" : 1347937119,
         "size" : 36588
      },
      "htdocs/cloud_index.html" : {
         "mtime" : 1347937120,
         "size" : 2764
      },
      "htdocs/css/dropdown/default_theme.css" : {
         "mtime" : 1347937120,
         "size" : 2842
      },
      "htdocs/css/dropdown/dropdown.css" : {
         "mtime" : 1347937122,
         "size" : 1176
      },
      "htdocs/css/dropdown/helper.css" : {
         "mtime" : 1347937119,
         "size" : 584
      },
      "htdocs/css/dropdown/images/favicon.ico" : {
         "mtime" : 1347937119,
         "size" : 1150
      },
      "htdocs/css/dropdown/images/icon.png" : {
         "mtime" : 1347937120,
         "size" : 1943
      },
      "htdocs/css/dropdown/images/nav-arrow-down-on.png" : {
         "mtime" : 1347937122,
         "size" : 99
      },
      "htdocs/css/dropdown/images/nav-arrow-down-open.png" : {
         "mtime" : 1347937122,
         "size" : 99
      },
      "htdocs/css/dropdown/images/nav-arrow-down.png" : {
         "mtime" : 1347937118,
         "size" : 112
      },
      "htdocs/css/dropdown/images/nav-arrow-left-on.png" : {
         "mtime" : 1347937120,
         "size" : 102
      },
      "htdocs/css/dropdown/images/nav-arrow-left-open.png" : {
         "mtime" : 1347937120,
         "size" : 102
      },
      "htdocs/css/dropdown/images/nav-arrow-left.png" : {
         "mtime" : 1347937119,
         "size" : 115
      },
      "htdocs/css/dropdown/images/nav-arrow-right-on.png" : {
         "mtime" : 1347937121,
         "size" : 101
      },
      "htdocs/css/dropdown/images/nav-arrow-right-open.png" : {
         "mtime" : 1347937121,
         "size" : 101
      },
      "htdocs/css/dropdown/images/nav-arrow-right.png" : {
         "mtime" : 1347937120,
         "size" : 114
      },
      "htdocs/css/dropdown/images/nav-arrow-up-on.png" : {
         "mtime" : 1347937120,
         "size" : 100
      },
      "htdocs/css/dropdown/images/nav-arrow-up-open.png" : {
         "mtime" : 1347937121,
         "size" : 100
      },
      "htdocs/css/dropdown/images/nav-arrow-up.png" : {
         "mtime" : 1347937120,
         "size" : 113
      },
      "htdocs/css/dropdown/images/pattern1.png" : {
         "mtime" : 1347937120,
         "size" : 98
      },
      "htdocs/css/dropdown/images/pattern2.png" : {
         "mtime" : 1347937120,
         "size" : 100
      },
      "htdocs/css/dropdown/images/pattern3.png" : {
         "mtime" : 1347937120,
         "size" : 3081
      },
      "htdocs/css/gbrowse.css" : {
         "mtime" : 1347937120,
         "size" : 6463
      },
      "htdocs/css/gbrowse_autocomplete.css" : {
         "mtime" : 1347937121,
         "size" : 527
      },
      "htdocs/css/gbrowse_elements.css" : {
         "mtime" : 1347937120,
         "size" : 2105
      },
      "htdocs/css/gbrowse_solid.css" : {
         "mtime" : 1347937121,
         "size" : 2916
      },
      "htdocs/css/gbrowse_transparent.css" : {
         "mtime" : 1347937121,
         "size" : 4203
      },
      "htdocs/css/gbrowse_warm.css" : {
         "mtime" : 1347937121,
         "size" : 3548
      },
      "htdocs/css/karyotype.css" : {
         "mtime" : 1347937118,
         "size" : 728
      },
      "htdocs/css/menulink.png" : {
         "mtime" : 1347937121,
         "size" : 2551
      },
      "htdocs/css/menulink_active.png" : {
         "mtime" : 1347937121,
         "size" : 2603
      },
      "htdocs/css/snapshots.css" : {
         "mtime" : 1347937120,
         "size" : 2528
      },
      "htdocs/css/subtracktable.css" : {
         "mtime" : 1347937121,
         "size" : 1657
      },
      "htdocs/css/titlebar-default.css" : {
         "mtime" : 1347937119,
         "size" : 243
      },
      "htdocs/css/titlebar-safari.css" : {
         "mtime" : 1347937120,
         "size" : 294
      },
      "htdocs/css/tracks.css" : {
         "mtime" : 1347937120,
         "size" : 1036
      },
      "htdocs/example_scripts/README" : {
         "mtime" : 1347937119,
         "size" : 851
      },
      "htdocs/example_scripts/gbrowse_get_sessionid.pl" : {
         "mtime" : 1347937119,
         "size" : 437
      },
      "htdocs/example_scripts/gbrowse_new_sessionid.pl" : {
         "mtime" : 1347937119,
         "size" : 433
      },
      "htdocs/example_scripts/gbrowse_upload_data.pl" : {
         "mtime" : 1347937119,
         "size" : 1354
      },
      "htdocs/example_scripts/gbrowse_upload_file.pl" : {
         "mtime" : 1347937121,
         "size" : 1222
      },
      "htdocs/example_scripts/index.html" : {
         "mtime" : 1347937120,
         "size" : 993
      },
      "htdocs/example_scripts/test_file.bed" : {
         "mtime" : 1347937120,
         "size" : 46
      },
      "htdocs/gbrowse_karyotype_help.html" : {
         "mtime" : 1347937119,
         "size" : 69981
      },
      "htdocs/gbrowse_syn_help.html" : {
         "mtime" : 1347937118,
         "size" : 6013
      },
      "htdocs/general_help.html" : {
         "mtime" : 1347937121,
         "size" : 20168
      },
      "htdocs/general_help.html.zh" : {
         "mtime" : 1347937120,
         "size" : 7865
      },
      "htdocs/gmod_cog.jpeg" : {
         "mtime" : 1347937121,
         "size" : 5289
      },
      "htdocs/images/backgrounds/cloud.jpg" : {
         "mtime" : 1347937120,
         "size" : 323758
      },
      "htdocs/images/backgrounds/lrock005.jpg" : {
         "mtime" : 1347937120,
         "size" : 5446
      },
      "htdocs/images/backgrounds/steel.jpg" : {
         "mtime" : 1347937119,
         "size" : 28565
      },
      "htdocs/images/balloons/GBubble/balloon.png" : {
         "mtime" : 1347937121,
         "size" : 10318
      },
      "htdocs/images/balloons/GBubble/balloon_ie.png" : {
         "mtime" : 1347937120,
         "size" : 13779
      },
      "htdocs/images/balloons/GBubble/close.png" : {
         "mtime" : 1347937121,
         "size" : 333
      },
      "htdocs/images/balloons/GBubble/down_left.png" : {
         "mtime" : 1347937120,
         "size" : 582
      },
      "htdocs/images/balloons/GBubble/down_right.png" : {
         "mtime" : 1347937121,
         "size" : 578
      },
      "htdocs/images/balloons/GBubble/up_left.png" : {
         "mtime" : 1347937121,
         "size" : 584
      },
      "htdocs/images/balloons/GBubble/up_right.png" : {
         "mtime" : 1347937120,
         "size" : 588
      },
      "htdocs/images/balloons/GPlain/balloon.png" : {
         "mtime" : 1347937121,
         "size" : 5240
      },
      "htdocs/images/balloons/GPlain/close.png" : {
         "mtime" : 1347937118,
         "size" : 333
      },
      "htdocs/images/balloons/GPlain/down_left.png" : {
         "mtime" : 1347937119,
         "size" : 151
      },
      "htdocs/images/balloons/GPlain/down_right.png" : {
         "mtime" : 1347937121,
         "size" : 149
      },
      "htdocs/images/balloons/GPlain/up_left.png" : {
         "mtime" : 1347937121,
         "size" : 153
      },
      "htdocs/images/balloons/GPlain/up_right.png" : {
         "mtime" : 1347937121,
         "size" : 153
      },
      "htdocs/images/buttons/ajax-loader.gif" : {
         "mtime" : 1347937118,
         "size" : 3208
      },
      "htdocs/images/buttons/blue_peaks.png" : {
         "mtime" : 1347937121,
         "size" : 490
      },
      "htdocs/images/buttons/check.png" : {
         "mtime" : 1347937122,
         "size" : 409
      },
      "htdocs/images/buttons/cursor-ewmove.ico" : {
         "mtime" : 1347937119,
         "size" : 2114
      },
      "htdocs/images/buttons/dark_0.4_pixel.png" : {
         "mtime" : 1347937118,
         "size" : 134
      },
      "htdocs/images/buttons/download.png" : {
         "mtime" : 1347937118,
         "size" : 151
      },
      "htdocs/images/buttons/empty.png" : {
         "mtime" : 1347937121,
         "size" : 249
      },
      "htdocs/images/buttons/ex.png" : {
         "mtime" : 1347937120,
         "size" : 164
      },
      "htdocs/images/buttons/ficon.png" : {
         "mtime" : 1347937118,
         "size" : 1000
      },
      "htdocs/images/buttons/ficon_2.png" : {
         "mtime" : 1347937121,
         "size" : 743
      },
      "htdocs/images/buttons/fmini.png" : {
         "mtime" : 1347937121,
         "size" : 121
      },
      "htdocs/images/buttons/fmini_2.png" : {
         "mtime" : 1347937121,
         "size" : 222
      },
      "htdocs/images/buttons/green.gif" : {
         "mtime" : 1347937120,
         "size" : 51
      },
      "htdocs/images/buttons/green1.gif" : {
         "mtime" : 1347937119,
         "size" : 67
      },
      "htdocs/images/buttons/green2.gif" : {
         "mtime" : 1347937119,
         "size" : 87
      },
      "htdocs/images/buttons/green3.gif" : {
         "mtime" : 1347937119,
         "size" : 90
      },
      "htdocs/images/buttons/green4.gif" : {
         "mtime" : 1347937121,
         "size" : 92
      },
      "htdocs/images/buttons/green5.gif" : {
         "mtime" : 1347937120,
         "size" : 94
      },
      "htdocs/images/buttons/green6.gif" : {
         "mtime" : 1347937121,
         "size" : 94
      },
      "htdocs/images/buttons/green7.gif" : {
         "mtime" : 1347937121,
         "size" : 97
      },
      "htdocs/images/buttons/green8.gif" : {
         "mtime" : 1347937121,
         "size" : 98
      },
      "htdocs/images/buttons/green_l1.gif" : {
         "mtime" : 1347937118,
         "size" : 89
      },
      "htdocs/images/buttons/green_l2.gif" : {
         "mtime" : 1347937120,
         "size" : 106
      },
      "htdocs/images/buttons/green_r1.gif" : {
         "mtime" : 1347937120,
         "size" : 89
      },
      "htdocs/images/buttons/green_r2.gif" : {
         "mtime" : 1347937120,
         "size" : 106
      },
      "htdocs/images/buttons/grey.png" : {
         "mtime" : 1347937119,
         "size" : 77
      },
      "htdocs/images/buttons/grey_0.4_pixel.png" : {
         "mtime" : 1347937121,
         "size" : 134
      },
      "htdocs/images/buttons/menu.png" : {
         "mtime" : 1347937121,
         "size" : 153
      },
      "htdocs/images/buttons/minus.gif" : {
         "mtime" : 1347937119,
         "size" : 79
      },
      "htdocs/images/buttons/minus.png" : {
         "mtime" : 1347937121,
         "size" : 152
      },
      "htdocs/images/buttons/minus12.png" : {
         "mtime" : 1347937121,
         "size" : 297
      },
      "htdocs/images/buttons/mminus.png" : {
         "mtime" : 1347937119,
         "size" : 212
      },
      "htdocs/images/buttons/mplus.gif" : {
         "mtime" : 1347937121,
         "size" : 103
      },
      "htdocs/images/buttons/mplus.png" : {
         "mtime" : 1347937119,
         "size" : 282
      },
      "htdocs/images/buttons/opacity_thumb.png" : {
         "mtime" : 1347937120,
         "size" : 349
      },
      "htdocs/images/buttons/open_open.png" : {
         "mtime" : 1347937121,
         "size" : 162
      },
      "htdocs/images/buttons/panleft.png" : {
         "mtime" : 1347937121,
         "size" : 519
      },
      "htdocs/images/buttons/panleft2.png" : {
         "mtime" : 1347937120,
         "size" : 589
      },
      "htdocs/images/buttons/panright.png" : {
         "mtime" : 1347937118,
         "size" : 880
      },
      "htdocs/images/buttons/panright2.png" : {
         "mtime" : 1347937121,
         "size" : 969
      },
      "htdocs/images/buttons/plus.gif" : {
         "mtime" : 1347937121,
         "size" : 103
      },
      "htdocs/images/buttons/plus.png" : {
         "mtime" : 1347937120,
         "size" : 157
      },
      "htdocs/images/buttons/query.png" : {
         "mtime" : 1347937118,
         "size" : 159
      },
      "htdocs/images/buttons/red.gif" : {
         "mtime" : 1347937121,
         "size" : 51
      },
      "htdocs/images/buttons/red1.gif" : {
         "mtime" : 1347937119,
         "size" : 67
      },
      "htdocs/images/buttons/red2.gif" : {
         "mtime" : 1347937119,
         "size" : 72
      },
      "htdocs/images/buttons/red3.gif" : {
         "mtime" : 1347937120,
         "size" : 88
      },
      "htdocs/images/buttons/red4.gif" : {
         "mtime" : 1347937119,
         "size" : 89
      },
      "htdocs/images/buttons/red5.gif" : {
         "mtime" : 1347937121,
         "size" : 91
      },
      "htdocs/images/buttons/red6.gif" : {
         "mtime" : 1347937119,
         "size" : 93
      },
      "htdocs/images/buttons/red7.gif" : {
         "mtime" : 1347937122,
         "size" : 94
      },
      "htdocs/images/buttons/red8.gif" : {
         "mtime" : 1347937121,
         "size" : 94
      },
      "htdocs/images/buttons/red_peaks.png" : {
         "mtime" : 1347937121,
         "size" : 456
      },
      "htdocs/images/buttons/ruler-icon.png" : {
         "mtime" : 1347937122,
         "size" : 172
      },
      "htdocs/images/buttons/ruler.png" : {
         "mtime" : 1347937119,
         "size" : 128
      },
      "htdocs/images/buttons/share.png" : {
         "mtime" : 1347937120,
         "size" : 168
      },
      "htdocs/images/buttons/snap_check.png" : {
         "mtime" : 1347937120,
         "size" : 3260
      },
      "htdocs/images/buttons/snap_down.png" : {
         "mtime" : 1347937121,
         "size" : 334
      },
      "htdocs/images/buttons/snap_ex.png" : {
         "mtime" : 1347937120,
         "size" : 3514
      },
      "htdocs/images/buttons/snap_mail.png" : {
         "mtime" : 1347937120,
         "size" : 866
      },
      "htdocs/images/buttons/snap_share.png" : {
         "mtime" : 1347937120,
         "size" : 466
      },
      "htdocs/images/buttons/snap_trash.png" : {
         "mtime" : 1347937119,
         "size" : 152
      },
      "htdocs/images/buttons/sortable.gif" : {
         "mtime" : 1347937121,
         "size" : 63
      },
      "htdocs/images/buttons/sorted_down.gif" : {
         "mtime" : 1347937118,
         "size" : 52
      },
      "htdocs/images/buttons/sorted_up.gif" : {
         "mtime" : 1347937119,
         "size" : 52
      },
      "htdocs/images/buttons/spinner.gif" : {
         "mtime" : 1347937118,
         "size" : 1542
      },
      "htdocs/images/buttons/square.png" : {
         "mtime" : 1347937119,
         "size" : 498
      },
      "htdocs/images/buttons/square.xpm" : {
         "mtime" : 1347937120,
         "size" : 400
      },
      "htdocs/images/buttons/tools.png" : {
         "mtime" : 1347937118,
         "size" : 168
      },
      "htdocs/images/buttons/trash.gif" : {
         "mtime" : 1347937121,
         "size" : 116
      },
      "htdocs/images/buttons/trash.png" : {
         "mtime" : 1347937118,
         "size" : 187
      },
      "htdocs/images/help/detail.gif" : {
         "mtime" : 1347937119,
         "size" : 177859
      },
      "htdocs/images/help/detail.png" : {
         "mtime" : 1347937119,
         "size" : 22045
      },
      "htdocs/images/help/detail_scale.gif" : {
         "mtime" : 1347937120,
         "size" : 1519
      },
      "htdocs/images/help/detail_scale.png" : {
         "mtime" : 1347937120,
         "size" : 3664
      },
      "htdocs/images/help/landmark.gif" : {
         "mtime" : 1347937121,
         "size" : 1654
      },
      "htdocs/images/help/landmark.png" : {
         "mtime" : 1347937118,
         "size" : 4625
      },
      "htdocs/images/help/multiple_hits.png" : {
         "mtime" : 1347937120,
         "size" : 22720
      },
      "htdocs/images/help/navbar.gif" : {
         "mtime" : 1347937121,
         "size" : 1765
      },
      "htdocs/images/help/navbar.png" : {
         "mtime" : 1347937120,
         "size" : 3664
      },
      "htdocs/images/help/numeric+data.gif" : {
         "mtime" : 1347937121,
         "size" : 5516
      },
      "htdocs/images/help/overview+detail.gif" : {
         "mtime" : 1347937121,
         "size" : 11015
      },
      "htdocs/images/help/overview+detail.png" : {
         "mtime" : 1347937120,
         "size" : 43401
      },
      "htdocs/images/help/overview.gif" : {
         "mtime" : 1347937118,
         "size" : 1718
      },
      "htdocs/images/help/remote.png" : {
         "mtime" : 1347937121,
         "size" : 8508
      },
      "htdocs/images/help/search+settings.gif" : {
         "mtime" : 1347937119,
         "size" : 4491
      },
      "htdocs/images/help/track+settings.gif" : {
         "mtime" : 1347937121,
         "size" : 5346
      },
      "htdocs/images/help/upload+edit.gif" : {
         "mtime" : 1347937120,
         "size" : 4432
      },
      "htdocs/images/help/upload+remote.gif" : {
         "mtime" : 1347937119,
         "size" : 4329
      },
      "htdocs/images/help/upload.gif" : {
         "mtime" : 1347937119,
         "size" : 1499
      },
      "htdocs/images/help/upload.png" : {
         "mtime" : 1347937120,
         "size" : 19389
      },
      "htdocs/images/help/upload_field.png" : {
         "mtime" : 1347937118,
         "size" : 14581
      },
      "htdocs/images/help/upload_list.png" : {
         "mtime" : 1347937118,
         "size" : 17722
      },
      "htdocs/images/help/worm_exons_spec.png" : {
         "mtime" : 1347937120,
         "size" : 78636
      },
      "htdocs/images/help/worm_telomeric_spec.png" : {
         "mtime" : 1347937120,
         "size" : 15134
      },
      "htdocs/images/help/yeast_I_genes_spec.png" : {
         "mtime" : 1347937121,
         "size" : 60791
      },
      "htdocs/images/openid/aim-logo.png" : {
         "mtime" : 1347937120,
         "size" : 2330
      },
      "htdocs/images/openid/blogspot-logo.png" : {
         "mtime" : 1347937121,
         "size" : 1766
      },
      "htdocs/images/openid/google-logo.gif" : {
         "mtime" : 1347937118,
         "size" : 870
      },
      "htdocs/images/openid/livejournal-logo.png" : {
         "mtime" : 1347937119,
         "size" : 3852
      },
      "htdocs/images/openid/myopenid-logo.png" : {
         "mtime" : 1347937121,
         "size" : 4792
      },
      "htdocs/images/openid/openid-logo.gif" : {
         "mtime" : 1347937120,
         "size" : 237
      },
      "htdocs/images/openid/yahoo-logo.png" : {
         "mtime" : 1347937121,
         "size" : 4294
      },
      "htdocs/index.html" : {
         "mtime" : 1347937118,
         "size" : 3807
      },
      "htdocs/js/GBox.js" : {
         "mtime" : 1347937120,
         "size" : 8425
      },
      "htdocs/js/ajax_upload.js" : {
         "mtime" : 1347937121,
         "size" : 18267
      },
      "htdocs/js/autocomplete.js" : {
         "mtime" : 1347937121,
         "size" : 1914
      },
      "htdocs/js/balloon.config.js" : {
         "mtime" : 1347937120,
         "size" : 4126
      },
      "htdocs/js/balloon.js" : {
         "mtime" : 1347937119,
         "size" : 36615
      },
      "htdocs/js/box.js" : {
         "mtime" : 1347937119,
         "size" : 6891
      },
      "htdocs/js/builder.js" : {
         "mtime" : 1347937121,
         "size" : 4744
      },
      "htdocs/js/buttons.js" : {
         "mtime" : 1347937120,
         "size" : 3318
      },
      "htdocs/js/controller.js" : {
         "mtime" : 1347937119,
         "size" : 53063
      },
      "htdocs/js/controls.js" : {
         "mtime" : 1347937122,
         "size" : 34787
      },
      "htdocs/js/detailSelect.js" : {
         "mtime" : 1347937120,
         "size" : 4234
      },
      "htdocs/js/dragdrop.js" : {
         "mtime" : 1347937121,
         "size" : 31950
      },
      "htdocs/js/effects.js" : {
         "mtime" : 1347937121,
         "size" : 38471
      },
      "htdocs/js/karyotype.js" : {
         "mtime" : 1347937121,
         "size" : 1034
      },
      "htdocs/js/login.js" : {
         "mtime" : 1347937120,
         "size" : 68364
      },
      "htdocs/js/menu.js" : {
         "mtime" : 1347937121,
         "size" : 475
      },
      "htdocs/js/overviewSelect.js" : {
         "mtime" : 1347937119,
         "size" : 4489
      },
      "htdocs/js/prototype.js" : {
         "mtime" : 1347937118,
         "size" : 163624
      },
      "htdocs/js/regionSelect.js" : {
         "mtime" : 1347937121,
         "size" : 2953
      },
      "htdocs/js/rubber.js" : {
         "mtime" : 1347937120,
         "size" : 17613
      },
      "htdocs/js/ruler.js" : {
         "mtime" : 1347937120,
         "size" : 2212
      },
      "htdocs/js/scriptaculous.js" : {
         "mtime" : 1347937121,
         "size" : 2931
      },
      "htdocs/js/scrollfix.js" : {
         "mtime" : 1347937119,
         "size" : 9092
      },
      "htdocs/js/slider.js" : {
         "mtime" : 1347937120,
         "size" : 10162
      },
      "htdocs/js/snapshotManager.js" : {
         "mtime" : 1347937120,
         "size" : 8802
      },
      "htdocs/js/sound.js" : {
         "mtime" : 1347937118,
         "size" : 2456
      },
      "htdocs/js/subtracktable.css" : {
         "mtime" : 1347937120,
         "size" : 1724
      },
      "htdocs/js/subtracktable.js" : {
         "mtime" : 1347937120,
         "size" : 33817
      },
      "htdocs/js/tabs.js" : {
         "mtime" : 1347937121,
         "size" : 1802
      },
      "htdocs/js/track.js" : {
         "mtime" : 1347937120,
         "size" : 1330
      },
      "htdocs/js/trackFavorites.js" : {
         "mtime" : 1347937121,
         "size" : 13849
      },
      "htdocs/js/track_configure.js" : {
         "mtime" : 1347937119,
         "size" : 7560
      },
      "htdocs/js/track_pan.js" : {
         "mtime" : 1347937121,
         "size" : 14433
      },
      "htdocs/js/unittest.js" : {
         "mtime" : 1347937120,
         "size" : 20209
      },
      "htdocs/js/x_cook.js" : {
         "mtime" : 1347937120,
         "size" : 1105
      },
      "htdocs/tutorial/bin/expression_levels.pl" : {
         "mtime" : 1347937120,
         "size" : 896
      },
      "htdocs/tutorial/bin/make_exon.pl" : {
         "mtime" : 1347937119,
         "size" : 1464
      },
      "htdocs/tutorial/bin/random_dna.pl" : {
         "mtime" : 1347937119,
         "size" : 250
      },
      "htdocs/tutorial/bin/random_feature.pl" : {
         "mtime" : 1347937121,
         "size" : 548
      },
      "htdocs/tutorial/bin/random_segments.pl" : {
         "mtime" : 1347937122,
         "size" : 1061
      },
      "htdocs/tutorial/bin/reformat.pl" : {
         "mtime" : 1347937120,
         "size" : 166
      },
      "htdocs/tutorial/conf_files/HEADER.html" : {
         "mtime" : 1347937120,
         "size" : 292
      },
      "htdocs/tutorial/conf_files/elegans_core.conf" : {
         "mtime" : 1347937121,
         "size" : 1624
      },
      "htdocs/tutorial/conf_files/elegans_extra.conf" : {
         "mtime" : 1347937120,
         "size" : 2574
      },
      "htdocs/tutorial/conf_files/volvox.conf" : {
         "mtime" : 1347937121,
         "size" : 1094
      },
      "htdocs/tutorial/conf_files/volvox_Phylo.conf" : {
         "mtime" : 1347937120,
         "size" : 587
      },
      "htdocs/tutorial/conf_files/volvox_final.conf" : {
         "mtime" : 1347937121,
         "size" : 4330
      },
      "htdocs/tutorial/conf_files/volvox_final_withPhylo.conf" : {
         "mtime" : 1347937121,
         "size" : 5639
      },
      "htdocs/tutorial/conf_files/volvox_halfway.conf" : {
         "mtime" : 1347937121,
         "size" : 3682
      },
      "htdocs/tutorial/conf_files/volvox_quarter.conf" : {
         "mtime" : 1347937121,
         "size" : 3489
      },
      "htdocs/tutorial/conf_files/volvox_refactored.conf" : {
         "mtime" : 1347937120,
         "size" : 5239
      },
      "htdocs/tutorial/data_files/HEADER.html" : {
         "mtime" : 1347937121,
         "size" : 264
      },
      "htdocs/tutorial/data_files/dog1_1700.wig" : {
         "mtime" : 1347937121,
         "size" : 1956
      },
      "htdocs/tutorial/data_files/elegans.fa" : {
         "mtime" : 1347937119,
         "size" : 55489
      },
      "htdocs/tutorial/data_files/elegans_acceptor.gff3" : {
         "mtime" : 1347937120,
         "size" : 159
      },
      "htdocs/tutorial/data_files/elegans_core.gff3" : {
         "mtime" : 1347937121,
         "size" : 13522
      },
      "htdocs/tutorial/data_files/elegans_deletion.gff3" : {
         "mtime" : 1347937119,
         "size" : 217
      },
      "htdocs/tutorial/data_files/elegans_expression.gff3" : {
         "mtime" : 1347937119,
         "size" : 380
      },
      "htdocs/tutorial/data_files/elegans_extra.gff3" : {
         "mtime" : 1347937121,
         "size" : 1535
      },
      "htdocs/tutorial/data_files/elegans_repeats.gff3" : {
         "mtime" : 1347937121,
         "size" : 630
      },
      "htdocs/tutorial/data_files/elegans_sts.gff3" : {
         "mtime" : 1347937121,
         "size" : 495
      },
      "htdocs/tutorial/data_files/ests.fa" : {
         "mtime" : 1347937121,
         "size" : 5194
      },
      "htdocs/tutorial/data_files/species.tre" : {
         "mtime" : 1347937121,
         "size" : 54
      },
      "htdocs/tutorial/data_files/volvox.fa" : {
         "mtime" : 1347937120,
         "size" : 50841
      },
      "htdocs/tutorial/data_files/volvox.gff3" : {
         "mtime" : 1347937120,
         "size" : 101373
      },
      "htdocs/tutorial/data_files/volvox_all.fa" : {
         "mtime" : 1347937119,
         "size" : 56035
      },
      "htdocs/tutorial/data_files/volvox_all.gff3" : {
         "mtime" : 1347937122,
         "size" : 15047
      },
      "htdocs/tutorial/data_files/volvox_array.gff3" : {
         "mtime" : 1347937120,
         "size" : 28797
      },
      "htdocs/tutorial/data_files/volvox_bacs.gff3" : {
         "mtime" : 1347937119,
         "size" : 221
      },
      "htdocs/tutorial/data_files/volvox_domains.gff3" : {
         "mtime" : 1347937119,
         "size" : 1170
      },
      "htdocs/tutorial/data_files/volvox_est.gff3" : {
         "mtime" : 1347937120,
         "size" : 730
      },
      "htdocs/tutorial/data_files/volvox_est_targets.gff3" : {
         "mtime" : 1347937119,
         "size" : 1005
      },
      "htdocs/tutorial/data_files/volvox_geneproducts.gff3" : {
         "mtime" : 1347937119,
         "size" : 405
      },
      "htdocs/tutorial/data_files/volvox_genes.gff3" : {
         "mtime" : 1347937119,
         "size" : 1977
      },
      "htdocs/tutorial/data_files/volvox_genes_simple.gff3" : {
         "mtime" : 1347937121,
         "size" : 722
      },
      "htdocs/tutorial/data_files/volvox_matches.gff3" : {
         "mtime" : 1347937119,
         "size" : 9583
      },
      "htdocs/tutorial/data_files/volvox_microarray.gff3" : {
         "mtime" : 1347937119,
         "size" : 139
      },
      "htdocs/tutorial/data_files/volvox_microarray.wig" : {
         "mtime" : 1347937121,
         "size" : 2113
      },
      "htdocs/tutorial/data_files/volvox_phyloalign.fa" : {
         "mtime" : 1347937119,
         "size" : 10388
      },
      "htdocs/tutorial/data_files/volvox_phyloalign.gff3" : {
         "mtime" : 1347937120,
         "size" : 132455
      },
      "htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3" : {
         "mtime" : 1347937119,
         "size" : 165
      },
      "htdocs/tutorial/data_files/volvox_remarks.gff3" : {
         "mtime" : 1347937121,
         "size" : 906
      },
      "htdocs/tutorial/data_files/volvox_trace.gff3" : {
         "mtime" : 1347937119,
         "size" : 88
      },
      "htdocs/tutorial/data_files/volvox_trace.scf" : {
         "mtime" : 1347937118,
         "size" : 167468
      },
      "htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff" : {
         "mtime" : 1347937119,
         "size" : 286
      },
      "htdocs/tutorial/dbgff/data_files/elegans_core.gff" : {
         "mtime" : 1347937121,
         "size" : 13494
      },
      "htdocs/tutorial/dbgff/data_files/elegans_deletion.gff" : {
         "mtime" : 1347937120,
         "size" : 269
      },
      "htdocs/tutorial/dbgff/data_files/elegans_expression.gff" : {
         "mtime" : 1347937120,
         "size" : 422
      },
      "htdocs/tutorial/dbgff/data_files/elegans_extra.gff" : {
         "mtime" : 1347937119,
         "size" : 1640
      },
      "htdocs/tutorial/dbgff/data_files/elegans_repeats.gff" : {
         "mtime" : 1347937118,
         "size" : 679
      },
      "htdocs/tutorial/dbgff/data_files/elegans_sts.gff" : {
         "mtime" : 1347937121,
         "size" : 573
      },
      "htdocs/tutorial/dbgff/data_files/volvox1.gff" : {
         "mtime" : 1347937120,
         "size" : 915
      },
      "htdocs/tutorial/dbgff/data_files/volvox2.gff" : {
         "mtime" : 1347937120,
         "size" : 993
      },
      "htdocs/tutorial/dbgff/data_files/volvox3.gff" : {
         "mtime" : 1347937119,
         "size" : 7757
      },
      "htdocs/tutorial/dbgff/data_files/volvox4.gff" : {
         "mtime" : 1347937121,
         "size" : 1031
      },
      "htdocs/tutorial/dbgff/data_files/volvox4a.gff" : {
         "mtime" : 1347937121,
         "size" : 296
      },
      "htdocs/tutorial/dbgff/data_files/volvox4b.gff" : {
         "mtime" : 1347937120,
         "size" : 427
      },
      "htdocs/tutorial/dbgff/data_files/volvox5.gff" : {
         "mtime" : 1347937121,
         "size" : 198
      },
      "htdocs/tutorial/dbgff/data_files/volvox6.gff" : {
         "mtime" : 1347937121,
         "size" : 23780
      },
      "htdocs/tutorial/dbgff/data_files/volvox7.gff" : {
         "mtime" : 1347937120,
         "size" : 773
      },
      "htdocs/tutorial/dbgff/data_files/volvox8.gff" : {
         "mtime" : 1347937121,
         "size" : 1025
      },
      "htdocs/tutorial/dbgff/data_files/volvox9.gff" : {
         "mtime" : 1347937121,
         "size" : 72
      },
      "htdocs/tutorial/dbgff/data_files/volvox_all.gff" : {
         "mtime" : 1347937119,
         "size" : 35771
      },
      "htdocs/tutorial/figures/DAS1.gif" : {
         "mtime" : 1347937118,
         "size" : 18431
      },
      "htdocs/tutorial/figures/adding_dna_to_alignments1.gif" : {
         "mtime" : 1347937119,
         "size" : 22283
      },
      "htdocs/tutorial/figures/aliases.gif" : {
         "mtime" : 1347937121,
         "size" : 49791
      },
      "htdocs/tutorial/figures/basic_conf1.gif" : {
         "mtime" : 1347937120,
         "size" : 4046
      },
      "htdocs/tutorial/figures/basic_conf2.gif" : {
         "mtime" : 1347937120,
         "size" : 3838
      },
      "htdocs/tutorial/figures/basics1.gif" : {
         "mtime" : 1347937121,
         "size" : 64079
      },
      "htdocs/tutorial/figures/canonical_gene1.gif" : {
         "mtime" : 1347937118,
         "size" : 5879
      },
      "htdocs/tutorial/figures/canonical_gene2.gif" : {
         "mtime" : 1347937119,
         "size" : 4998
      },
      "htdocs/tutorial/figures/canonical_gene3.gif" : {
         "mtime" : 1347937120,
         "size" : 4883
      },
      "htdocs/tutorial/figures/categorytable.png" : {
         "mtime" : 1347937120,
         "size" : 9307
      },
      "htdocs/tutorial/figures/cds1.gif" : {
         "mtime" : 1347937121,
         "size" : 10974
      },
      "htdocs/tutorial/figures/config_editing.png" : {
         "mtime" : 1347937121,
         "size" : 40122
      },
      "htdocs/tutorial/figures/custom_aggregators1.gif" : {
         "mtime" : 1347937121,
         "size" : 4715
      },
      "htdocs/tutorial/figures/descriptions1.gif" : {
         "mtime" : 1347937118,
         "size" : 7675
      },
      "htdocs/tutorial/figures/dna1.gif" : {
         "mtime" : 1347937120,
         "size" : 10806
      },
      "htdocs/tutorial/figures/dna1.png" : {
         "mtime" : 1347937121,
         "size" : 17625
      },
      "htdocs/tutorial/figures/dna2.gif" : {
         "mtime" : 1347937121,
         "size" : 14773
      },
      "htdocs/tutorial/figures/dna2.png" : {
         "mtime" : 1347937119,
         "size" : 19801
      },
      "htdocs/tutorial/figures/enhancements1.gif" : {
         "mtime" : 1347937121,
         "size" : 14066
      },
      "htdocs/tutorial/figures/enhancements2.gif" : {
         "mtime" : 1347937121,
         "size" : 14473
      },
      "htdocs/tutorial/figures/enhancements3.gif" : {
         "mtime" : 1347937119,
         "size" : 11311
      },
      "htdocs/tutorial/figures/figure1.gif" : {
         "mtime" : 1347937119,
         "size" : 19137
      },
      "htdocs/tutorial/figures/figure10.gif" : {
         "mtime" : 1347937120,
         "size" : 6755
      },
      "htdocs/tutorial/figures/figure11.gif" : {
         "mtime" : 1347937119,
         "size" : 13376
      },
      "htdocs/tutorial/figures/figure12.gif" : {
         "mtime" : 1347937121,
         "size" : 10663
      },
      "htdocs/tutorial/figures/figure13a.gif" : {
         "mtime" : 1347937120,
         "size" : 9890
      },
      "htdocs/tutorial/figures/figure13b.gif" : {
         "mtime" : 1347937121,
         "size" : 14773
      },
      "htdocs/tutorial/figures/figure14.gif" : {
         "mtime" : 1347937121,
         "size" : 7552
      },
      "htdocs/tutorial/figures/figure15.gif" : {
         "mtime" : 1347937119,
         "size" : 7629
      },
      "htdocs/tutorial/figures/figure16.gif" : {
         "mtime" : 1347937120,
         "size" : 3783
      },
      "htdocs/tutorial/figures/figure17.gif" : {
         "mtime" : 1347937119,
         "size" : 7721
      },
      "htdocs/tutorial/figures/figure18.gif" : {
         "mtime" : 1347937120,
         "size" : 14333
      },
      "htdocs/tutorial/figures/figure19.gif" : {
         "mtime" : 1347937119,
         "size" : 7702
      },
      "htdocs/tutorial/figures/figure2.gif" : {
         "mtime" : 1347937120,
         "size" : 4046
      },
      "htdocs/tutorial/figures/figure20.gif" : {
         "mtime" : 1347937118,
         "size" : 2781
      },
      "htdocs/tutorial/figures/figure21.gif" : {
         "mtime" : 1347937121,
         "size" : 16085
      },
      "htdocs/tutorial/figures/figure22.gif" : {
         "mtime" : 1347937119,
         "size" : 14066
      },
      "htdocs/tutorial/figures/figure23.gif" : {
         "mtime" : 1347937120,
         "size" : 14473
      },
      "htdocs/tutorial/figures/figure24.gif" : {
         "mtime" : 1347937120,
         "size" : 10309
      },
      "htdocs/tutorial/figures/figure25.gif" : {
         "mtime" : 1347937121,
         "size" : 225766
      },
      "htdocs/tutorial/figures/figure26.gif" : {
         "mtime" : 1347937121,
         "size" : 442562
      },
      "htdocs/tutorial/figures/figure27.gif" : {
         "mtime" : 1347937119,
         "size" : 5124
      },
      "htdocs/tutorial/figures/figure28.gif" : {
         "mtime" : 1347937119,
         "size" : 11101
      },
      "htdocs/tutorial/figures/figure29.gif" : {
         "mtime" : 1347937120,
         "size" : 4681
      },
      "htdocs/tutorial/figures/figure3.gif" : {
         "mtime" : 1347937118,
         "size" : 3838
      },
      "htdocs/tutorial/figures/figure30.gif" : {
         "mtime" : 1347937121,
         "size" : 18431
      },
      "htdocs/tutorial/figures/figure4.gif" : {
         "mtime" : 1347937121,
         "size" : 7675
      },
      "htdocs/tutorial/figures/figure5.gif" : {
         "mtime" : 1347937119,
         "size" : 11085
      },
      "htdocs/tutorial/figures/figure6.gif" : {
         "mtime" : 1347937120,
         "size" : 12899
      },
      "htdocs/tutorial/figures/figure7.gif" : {
         "mtime" : 1347937121,
         "size" : 4088
      },
      "htdocs/tutorial/figures/figure7a.gif" : {
         "mtime" : 1347937121,
         "size" : 9890
      },
      "htdocs/tutorial/figures/figure7b.gif" : {
         "mtime" : 1347937119,
         "size" : 14773
      },
      "htdocs/tutorial/figures/figure8.gif" : {
         "mtime" : 1347937120,
         "size" : 4998
      },
      "htdocs/tutorial/figures/figure9.gif" : {
         "mtime" : 1347937119,
         "size" : 4883
      },
      "htdocs/tutorial/figures/graph1.gif" : {
         "mtime" : 1347937118,
         "size" : 10663
      },
      "htdocs/tutorial/figures/multiple_alignments1.gif" : {
         "mtime" : 1347937120,
         "size" : 7552
      },
      "htdocs/tutorial/figures/multiple_alignments2.gif" : {
         "mtime" : 1347937119,
         "size" : 7629
      },
      "htdocs/tutorial/figures/multiple_alignments3.gif" : {
         "mtime" : 1347937120,
         "size" : 3783
      },
      "htdocs/tutorial/figures/overview1.gif" : {
         "mtime" : 1347937121,
         "size" : 16085
      },
      "htdocs/tutorial/figures/phylo_align1.gif" : {
         "mtime" : 1347937119,
         "size" : 15289
      },
      "htdocs/tutorial/figures/phylo_align2.gif" : {
         "mtime" : 1347937120,
         "size" : 13302
      },
      "htdocs/tutorial/figures/phylo_align3.gif" : {
         "mtime" : 1347937120,
         "size" : 16209
      },
      "htdocs/tutorial/figures/plugins1.gif" : {
         "mtime" : 1347937120,
         "size" : 14333
      },
      "htdocs/tutorial/figures/plugins2.gif" : {
         "mtime" : 1347937120,
         "size" : 7702
      },
      "htdocs/tutorial/figures/predicted_genes.gif" : {
         "mtime" : 1347937119,
         "size" : 6208
      },
      "htdocs/tutorial/figures/segmented_features1.gif" : {
         "mtime" : 1347937121,
         "size" : 11085
      },
      "htdocs/tutorial/figures/segmented_features2.gif" : {
         "mtime" : 1347937121,
         "size" : 12899
      },
      "htdocs/tutorial/figures/semantic_zooming1.gif" : {
         "mtime" : 1347937121,
         "size" : 2781
      },
      "htdocs/tutorial/figures/setting_popup.png" : {
         "mtime" : 1347937121,
         "size" : 26171
      },
      "htdocs/tutorial/figures/third_party1.gif" : {
         "mtime" : 1347937118,
         "size" : 225766
      },
      "htdocs/tutorial/figures/third_party2.gif" : {
         "mtime" : 1347937121,
         "size" : 34166
      },
      "htdocs/tutorial/figures/third_party3.gif" : {
         "mtime" : 1347937119,
         "size" : 5124
      },
      "htdocs/tutorial/figures/third_party4.gif" : {
         "mtime" : 1347937119,
         "size" : 11101
      },
      "htdocs/tutorial/figures/third_party5.gif" : {
         "mtime" : 1347937121,
         "size" : 4681
      },
      "htdocs/tutorial/figures/trace1.png" : {
         "mtime" : 1347937121,
         "size" : 6907
      },
      "htdocs/tutorial/figures/trace2.png" : {
         "mtime" : 1347937119,
         "size" : 8067
      },
      "htdocs/tutorial/figures/wiggle_density.gif" : {
         "mtime" : 1347937121,
         "size" : 15527
      },
      "htdocs/tutorial/figures/wiggle_density.png" : {
         "mtime" : 1347937121,
         "size" : 10815
      },
      "htdocs/tutorial/tutorial.css" : {
         "mtime" : 1347937121,
         "size" : 710
      },
      "htdocs/tutorial/tutorial.html" : {
         "mtime" : 1347937121,
         "size" : 168699
      },
      "htdocs/tutorial/tutorial.phyTreeEdit.html" : {
         "mtime" : 1347937119,
         "size" : 4606
      },
      "htdocs/vbox_index.html" : {
         "mtime" : 1347937119,
         "size" : 3111
      },
      "install_util/GBrowseGuessDirectories.pm" : {
         "mtime" : 1347937120,
         "size" : 5243
      },
      "install_util/GBrowseInstall.pm" : {
         "mtime" : 1347937121,
         "size" : 31171
      },
      "install_util/InstallUtil.pm" : {
         "mtime" : 1347937120,
         "size" : 3884
      },
      "install_util/cgi_install.pl" : {
         "mtime" : 1347937120,
         "size" : 1009
      },
      "install_util/conf_install.pl" : {
         "mtime" : 1347937119,
         "size" : 2044
      },
      "install_util/gbrowse_ppm_install.pl" : {
         "mtime" : 1347937121,
         "size" : 3745
      },
      "install_util/htdocs_install.pl" : {
         "mtime" : 1347937118,
         "size" : 7969
      },
      "install_util/make_clean_add.pl" : {
         "mtime" : 1347937119,
         "size" : 578
      },
      "install_util/pod2docs.pl" : {
         "mtime" : 1347937121,
         "size" : 747
      },
      "install_util/sync-bioperl.sh" : {
         "mtime" : 1347937120,
         "size" : 281
      },
      "install_util/tag.pl" : {
         "mtime" : 1347937119,
         "size" : 349
      },
      "lib/Bio/DB/GFF/Aggregator/match_gap.pm" : {
         "module" : "Bio::DB::GFF::Aggregator::match_gap",
         "mtime" : 1347937119,
         "size" : 2372,
         "used" : [
            "Bio::DB::GFF::Aggregator",
            "strict"
         ]
      },
      "lib/Bio/DB/GFF/Aggregator/reftranscript.pm" : {
         "module" : "Bio::DB::GFF::Aggregator::reftranscript",
         "mtime" : 1347937120,
         "size" : 2047,
         "used" : [
            "Bio::DB::GFF::Aggregator",
            "strict",
            "vars"
         ]
      },
      "lib/Bio/DB/GFF/Aggregator/waba_alignment.pm" : {
         "module" : "Bio::DB::GFF::Aggregator::waba_alignment",
         "mtime" : 1347937121,
         "size" : 4493,
         "used" : [
            "Bio::DB::GFF::Aggregator",
            "constant",
            "strict",
            "vars"
         ]
      },
      "lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm" : {
         "module" : "Bio::DB::GFF::Aggregator::wormbase_gene",
         "mtime" : 1347937121,
         "size" : 2253,
         "used" : [
            "Bio::DB::GFF::Aggregator",
            "strict",
            "vars"
         ]
      },
      "lib/Bio/DB/SeqFeature/Store/Alias.pm" : {
         "module" : "Bio::DB::SeqFeature::Store::Alias::Segment",
         "mtime" : 1347937120,
         "noed" : [
            "warnings"
         ],
         "required_in_eval" : [
            "IO::String",
            "LWP::UserAgent"
         ],
         "size" : 16308,
         "used" : [
            "Bio::DB::SeqFeature::Store",
            "Carp",
            "IO::File",
            "strict"
         ]
      },
      "lib/Bio/DB/SeqFeature/Store/BedLoader.pm" : {
         "module" : "Bio::DB::SeqFeature::Store::BedLoader",
         "mtime" : 1347937120,
         "size" : 5937,
         "used" : [
            "Bio::DB::SeqFeature::Store::GFF3Loader",
            "Bio::DB::SeqFeature::Store::LoadHelper",
            "Carp",
            "Text::ParseWords",
            "strict"
         ]
      },
      "lib/Bio/DB/Tagger.pm" : {
         "module" : "Bio::DB::Tagger",
         "mtime" : 1347937121,
         "size" : 17627,
         "used" : [
            "Bio::DB::Tagger::Tag",
            "Carp",
            "DBI",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/DB/Tagger/Tag.pm" : {
         "module" : "Bio::DB::Tagger::Tag",
         "mtime" : 1347937121,
         "size" : 3313,
         "used" : [
            "Carp",
            "overload"
         ]
      },
      "lib/Bio/DB/Tagger/mysql.pm" : {
         "module" : "Bio::DB::Tagger::mysql",
         "mtime" : 1347937120,
         "size" : 1668,
         "used" : [
            "Bio::DB::Tagger",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2.pm" : {
         "module" : "Bio::Graphics::Browser2",
         "mtime" : 1347937120,
         "required_in_eval" : [
            "DB_File",
            "Storable"
         ],
         "size" : 17078,
         "used" : [
            "Bio::Graphics::Browser2::AuthorizedFeatureFile",
            "Bio::Graphics::Browser2::DataSource",
            "Bio::Graphics::Browser2::Session",
            "Carp",
            "File::Basename",
            "File::Path",
            "File::Spec",
            "GBrowse::ConfigData",
            "Text::ParseWords",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Action.pm" : {
         "module" : "Bio::Graphics::Browser2::Action",
         "mtime" : 1347937121,
         "size" : 41441,
         "used" : [
            "Bio::Graphics::Browser2::Render::HTML",
            "Bio::Graphics::Browser2::SendMail",
            "Bio::Graphics::Browser2::TrackDumper",
            "CGI",
            "Carp",
            "Data::Dumper",
            "Digest::MD5",
            "File::Basename",
            "File::Path",
            "JSON",
            "POSIX",
            "Storable",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm" : {
         "module" : "Bio::Graphics::Browser2::AuthorizedFeatureFile",
         "mtime" : 1347937122,
         "size" : 4696,
         "used" : [
            "Bio::Graphics",
            "Bio::Graphics::FeatureFile",
            "CGI",
            "Carp",
            "Socket",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/CAlign.pm" : {
         "module" : "Bio::Graphics::Browser2::CAlign",
         "mtime" : 1347937119,
         "required" : [
            "DynaLoader",
            "Exporter"
         ],
         "size" : 1129,
         "used" : [
            "5.005",
            "Carp",
            "strict",
            "vars"
         ]
      },
      "lib/Bio/Graphics/Browser2/CAlign.xs" : {
         "mtime" : 1347937120,
         "size" : 6261
      },
      "lib/Bio/Graphics/Browser2/CachedTrack.pm" : {
         "module" : "Bio::Graphics::Browser2::CachedTrack",
         "mtime" : 1347937118,
         "size" : 7833,
         "used" : [
            "Carp",
            "Digest::MD5",
            "Fcntl",
            "File::Path",
            "File::Spec",
            "IO::File",
            "Storable",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataBase.pm" : {
         "module" : "LRUCache",
         "mtime" : 1347937119,
         "size" : 3544,
         "used" : [
            "Data::Dumper",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader",
         "mtime" : 1347937119,
         "required_in_eval" : [
            "Bio::DB::Fasta",
            "Bio::DB::Sam",
            "Bio::DB::SeqFeature::Store::DBI::SQLite",
            "Bio::DB::SeqFeature::Store::berkeleydb",
            "DBI"
         ],
         "size" : 12195,
         "used" : [
            "Carp",
            "Digest::MD5",
            "Fcntl",
            "File::Basename",
            "IO::File",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/bam.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::bam",
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Bio::DB::BigWig",
            "Bio::DB::Sam",
            "Bio::DB::Sam::SamToGBrowse"
         ],
         "size" : 4489,
         "used" : [
            "Bio::Graphics::Browser2::DataLoader",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/bed.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::bed",
         "mtime" : 1347937119,
         "size" : 4400,
         "used" : [
            "Bio::DB::SeqFeature::Store",
            "Bio::Graphics::Browser2::DataLoader::generic",
            "Carp",
            "File::Basename",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/bigwig.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::bigwig",
         "mtime" : 1347937119,
         "size" : 3023,
         "used" : [
            "Bio::DB::BigWig",
            "Bio::Graphics::Browser2::DataLoader",
            "File::Basename",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::featurefile",
         "mtime" : 1347937120,
         "size" : 4411,
         "used" : [
            "Bio::DB::SeqFeature::Store::FeatureFileLoader",
            "Bio::Graphics::Browser2::DataLoader::generic",
            "Text::ParseWords",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/generic.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::generic",
         "mtime" : 1347937119,
         "size" : 7400,
         "used" : [
            "Bio::DB::SeqFeature::Store",
            "Bio::Graphics::Browser2::DataLoader",
            "Carp",
            "File::Basename",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/gff.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::gff",
         "mtime" : 1347937118,
         "size" : 245,
         "used" : [
            "Bio::Graphics::Browser2::DataLoader::generic",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/gff3.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::gff3",
         "mtime" : 1347937120,
         "size" : 202,
         "used" : [
            "Bio::Graphics::Browser2::DataLoader::generic",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/sam.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::sam",
         "mtime" : 1347937119,
         "size" : 3393,
         "used" : [
            "Bio::DB::Sam",
            "Bio::Graphics::Browser2::DataLoader::bam",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm" : {
         "module" : "Bio::Graphics::Browser2::DataLoader::wig2bigwig",
         "mtime" : 1347937121,
         "noed" : [
            "track"
         ],
         "size" : 6204,
         "used" : [
            "Bio::DB::BigWig",
            "Bio::Graphics::Browser2::DataLoader",
            "Bio::Graphics::Browser2::Util",
            "File::Basename",
            "strict"
         ],
         "used_in_eval" : [
            "IO::Pipe"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm" : {
         "module" : "Bio::Graphics::Wiggle::Loader::Nosample",
         "mtime" : 1347937120,
         "required_in_eval" : [
            "Bio::Graphics::Browser2::DataLoader::featurefile"
         ],
         "size" : 4176,
         "used" : [
            "Bio::Graphics::Browser2::DataLoader",
            "Bio::Graphics::Wiggle::Loader",
            "File::Basename",
            "IO::String",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/DataSource.pm" : {
         "module" : "Bio::Graphics::Browser2::DataSource",
         "mtime" : 1347937119,
         "noed" : [
            "strict",
            "warnings"
         ],
         "required" : [
            "Apache2::RequestUtil",
            "Apache2::ServerUtil",
            "Apache2::SubRequest"
         ],
         "required_in_eval" : [
            "Bio::DB::SeqFeature::Store::Alias"
         ],
         "size" : 39706,
         "used" : [
            "Bio::DB::SeqFeature::Store::Alias",
            "Bio::Graphics::Browser2::AuthorizedFeatureFile",
            "Bio::Graphics::Browser2::DataBase",
            "Bio::Graphics::Browser2::Shellwords",
            "Bio::Graphics::Browser2::Util",
            "CGI",
            "Carp",
            "Data::Dumper",
            "Digest::MD5",
            "File::Basename",
            "File::Path",
            "File::Spec",
            "Storable",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/ExternalData.pm" : {
         "module" : "Bio::Graphics::Browser2::ExternalData",
         "mtime" : 1347937119,
         "required" : [
            "File::Temp"
         ],
         "required_in_eval" : [
            "Bio::Graphics::Wiggle::Loader"
         ],
         "size" : 4455,
         "used" : [
            "Bio::Graphics::Browser2::Util",
            "Bio::Graphics::Wiggle",
            "Carp",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/GFFhelper.pm" : {
         "module" : "FakeHomol",
         "mtime" : 1347937120,
         "size" : 13885,
         "used" : [
            "Bio::DB::GFF::Homol",
            "Bio::Root::Root",
            "Bio::SeqFeature::Generic",
            "CGI",
            "Data::Dumper",
            "IO::String",
            "Storable",
            "strict",
            "vars"
         ]
      },
      "lib/Bio/Graphics/Browser2/I18n.pm" : {
         "module" : "Bio::Graphics::Browser2::I18n",
         "mtime" : 1347937121,
         "size" : 1609,
         "used" : [
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/Markup.pm" : {
         "module" : "Bio::Graphics::Browser2::Markup",
         "mtime" : 1347937121,
         "size" : 14621,
         "used" : [
            "Bio::Graphics::Panel",
            "Carp",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/OptionPick.pm" : {
         "module" : "Bio::Graphics::Browser2::OptionPick",
         "mtime" : 1347937118,
         "size" : 5290,
         "used" : [
            "Bio::Graphics::Glyph::heat_map",
            "Bio::Graphics::Panel",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/PadAlignment.pm" : {
         "module" : "Bio::Graphics::Browser2::PadAlignment",
         "mtime" : 1347937121,
         "size" : 28283,
         "used" : [
            "Bio::Graphics::Browser2::Markup",
            "Data::Dumper",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/Plugin.pm" : {
         "module" : "Bio::Graphics::Browser2::Plugin",
         "mtime" : 1347937119,
         "size" : 32986,
         "used" : [
            "Bio::Graphics::Browser2",
            "CGI",
            "Data::Dumper",
            "Digest::MD5",
            "strict",
            "vars"
         ],
         "used_in_eval" : [
            "Class::ISA"
         ]
      },
      "lib/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm" : {
         "module" : "Bio::Graphics::Browser2::Plugin::AuthPlugin",
         "mtime" : 1347937119,
         "size" : 6155,
         "used" : [
            "Bio::Graphics::Browser2::Plugin",
            "Bio::Graphics::Browser2::Util",
            "CGI",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/PluginSet.pm" : {
         "module" : "Bio::Graphics::Browser2::PluginSet",
         "mtime" : 1347937118,
         "size" : 8051,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::Util",
            "CGI",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/Realign.pm" : {
         "module" : "Bio::Graphics::Browser2::Realign",
         "mtime" : 1347937121,
         "required" : [
            "Exporter"
         ],
         "required_in_eval" : [
            "Bio::Graphics::Browser2::CAlign"
         ],
         "size" : 11420,
         "used" : [
            "Carp",
            "constant",
            "strict",
            "vars"
         ]
      },
      "lib/Bio/Graphics/Browser2/Region.pm" : {
         "module" : "Bio::Graphics::Browser2::Region",
         "mtime" : 1347937121,
         "size" : 15465,
         "used" : [
            "Bio::Graphics::Browser2::Shellwords",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/RegionSearch.pm" : {
         "module" : "Bio::Graphics::Browser2::MetaSegment::Iterator",
         "mtime" : 1347937120,
         "noed" : [
            "warnings"
         ],
         "required_in_eval" : [
            "IO::Pipe",
            "IO::Select"
         ],
         "size" : 20917,
         "used" : [
            "Bio::Graphics::Browser2::Region",
            "Bio::Graphics::Browser2::Render::Slave::Status",
            "Bio::Graphics::Browser2::RenderPanels",
            "Bio::Graphics::Browser2::Util",
            "Bio::Graphics::GBrowseFeature",
            "Carp",
            "HTTP::Request::Common",
            "LWP::UserAgent",
            "Storable",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/RemoteSet.pm" : {
         "module" : "Bio::Graphics::Browser2::RemoteSet",
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Bio::Das",
            "LWP"
         ],
         "size" : 11947,
         "used" : [
            "Bio::Graphics::Browser2::ExternalData",
            "Bio::Graphics::Browser2::Util",
            "CGI",
            "Digest::MD5",
            "File::Path",
            "File::Spec",
            "IO::File",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render.pm" : {
         "module" : "Bio::Graphics::Browser2::Render",
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Apache::SubProcess",
            "Bio::DB::Fasta",
            "Bio::DB::Sam",
            "Bio::Graphics::Browser2::Render::Login",
            "FCGI"
         ],
         "size" : 132624,
         "used" : [
            "Bio::Graphics::Browser2::Action",
            "Bio::Graphics::Browser2::I18n",
            "Bio::Graphics::Browser2::PluginSet",
            "Bio::Graphics::Browser2::Region",
            "Bio::Graphics::Browser2::RegionSearch",
            "Bio::Graphics::Browser2::RemoteSet",
            "Bio::Graphics::Browser2::Render::SnapshotManager",
            "Bio::Graphics::Browser2::RenderPanels",
            "Bio::Graphics::Browser2::Session",
            "Bio::Graphics::Browser2::Shellwords",
            "Bio::Graphics::Browser2::SubtrackTable",
            "Bio::Graphics::Browser2::TrackDumper",
            "Bio::Graphics::Browser2::UserDB",
            "Bio::Graphics::Browser2::UserTracks",
            "Bio::Graphics::Browser2::Util",
            "CGI",
            "Carp",
            "Data::Dumper",
            "Digest::MD5",
            "English",
            "File::Basename",
            "JSON",
            "POSIX",
            "Text::Tabs",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/HTML.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::HTML",
         "mtime" : 1347937118,
         "required_in_eval" : [
            "Bio::Graphics::Browser2::TrackConfig",
            "GD::SVG"
         ],
         "size" : 91474,
         "used" : [
            "Bio::Graphics::Browser2::Render",
            "Bio::Graphics::Browser2::Render::TrackConfig",
            "Bio::Graphics::Browser2::Shellwords",
            "Bio::Graphics::Browser2::SubtrackTable",
            "Bio::Graphics::Browser2::Util",
            "Bio::Graphics::Karyotype",
            "CGI",
            "Carp",
            "Digest::MD5",
            "JSON",
            "POSIX",
            "Text::Tabs",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::HTML::TrackListing",
         "mtime" : 1347937119,
         "size" : 4425,
         "used" : [
            "Bio::Graphics::Browser2::Util",
            "CGI",
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::HTML::TrackListing::Categories",
         "mtime" : 1347937119,
         "noed" : [
            "warnings"
         ],
         "size" : 10446,
         "used" : [
            "Bio::Graphics::Browser2::Render::HTML::TrackListing",
            "Bio::Graphics::Browser2::Shellwords",
            "CGI",
            "Carp",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/Login.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::Login",
         "mtime" : 1347937120,
         "size" : 10911,
         "used" : [
            "Bio::Graphics::Browser2::Render",
            "CGI",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/Slave.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::Slave",
         "mtime" : 1347937119,
         "size" : 18868,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::DataBase",
            "Bio::Graphics::Browser2::DataSource",
            "Bio::Graphics::Browser2::I18n",
            "Bio::Graphics::Browser2::Region",
            "Bio::Graphics::Browser2::RegionSearch",
            "Bio::Graphics::Browser2::RenderPanels",
            "Bio::Graphics::GBrowseFeature",
            "CGI",
            "Carp",
            "Fcntl",
            "File::Basename",
            "File::Path",
            "File::Spec",
            "HTTP::Daemon",
            "IO::File",
            "IO::String",
            "POSIX",
            "Storable",
            "Text::ParseWords",
            "Time::HiRes",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/Slave/Status.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::Slave::Status",
         "mtime" : 1347937121,
         "required_in_eval" : [
            "DB_File::Lock"
         ],
         "size" : 2921,
         "used" : [
            "DB_File",
            "Fcntl",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/SnapshotManager.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::SnapshotManager",
         "mtime" : 1347937119,
         "required_in_eval" : [
            "GD::SVG"
         ],
         "size" : 10572,
         "used" : [
            "CGI",
            "Carp",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Render/TrackConfig.pm" : {
         "module" : "Bio::Graphics::Browser2::Render::TrackConfig",
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Bio::Graphics::Browser2::OptionPick"
         ],
         "size" : 23880,
         "used" : [
            "Bio::Graphics::Browser2::Shellwords",
            "CGI",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/RenderPanels.pm" : {
         "module" : "Bio::Graphics::Browser2::RenderPanels",
         "mtime" : 1347937118,
         "required_in_eval" : [
            "LWP::UserAgent",
            "Storable"
         ],
         "size" : 87107,
         "used" : [
            "Bio::Graphics",
            "Bio::Graphics::Browser2::CachedTrack",
            "Bio::Graphics::Browser2::Render",
            "Bio::Graphics::Browser2::Render::Slave::Status",
            "Bio::Graphics::Browser2::Util",
            "CGI",
            "Carp",
            "Data::Dumper",
            "Digest::MD5",
            "GD",
            "IO::File",
            "POSIX",
            "Time::HiRes",
            "constant",
            "strict",
            "warnings"
         ],
         "used_in_eval" : [
            "HTTP::Request::Common"
         ]
      },
      "lib/Bio/Graphics/Browser2/SendMail.pm" : {
         "module" : "Bio::Graphics::Browser2::SendMail",
         "mtime" : 1347937120,
         "size" : 3260,
         "used" : [
            "Bio::Graphics::Browser2",
            "CGI",
            "Carp",
            "DBI",
            "Digest::MD5",
            "Digest::SHA",
            "JSON",
            "Text::ParseWords",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/Session.pm" : {
         "module" : "Bio::Graphics::Browser2::Session",
         "mtime" : 1347937119,
         "required_in_eval" : [
            "DBD::mysql",
            "DBI",
            "File::NFSLock",
            "Time::HiRes"
         ],
         "size" : 11193,
         "used" : [
            "CGI::Cookie",
            "CGI::Session",
            "Carp",
            "Digest::MD5",
            "Fcntl",
            "File::Path",
            "File::Spec",
            "constant",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/Shellwords.pm" : {
         "module" : "Bio::Graphics::Browser2::Shellwords",
         "mtime" : 1347937119,
         "required" : [
            "Text::ParseWords"
         ],
         "size" : 212,
         "used" : [
            "Exporter"
         ]
      },
      "lib/Bio/Graphics/Browser2/SubtrackTable.pm" : {
         "module" : "Bio::Graphics::Browser2::SubtrackTable",
         "mtime" : 1347937119,
         "noed" : [
            "warnings"
         ],
         "size" : 16566,
         "used" : [
            "Bio::Graphics::Browser2::Shellwords",
            "Bio::SeqFeatureI",
            "CGI",
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Browser2/TrackDumper.pm" : {
         "module" : "Bio::Graphics::Browser2::TrackDumper",
         "mtime" : 1347937119,
         "required_in_eval" : [
            "Bio::SeqIO"
         ],
         "size" : 27222,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::RegionSearch",
            "Bio::Graphics::Browser2::Shellwords",
            "Bio::Graphics::Browser2::TrackDumper::RichSeqMaker",
            "Bio::Graphics::Browser2::Util",
            "Bio::Graphics::FeatureFile",
            "Bio::SeqIO",
            "CGI",
            "strict"
         ],
         "used_in_eval" : [
            "Bio::DB::BigWig",
            "Bio::Graphics::Wiggle",
            "IO::Pipe"
         ]
      },
      "lib/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm" : {
         "module" : "Bio::Graphics::Browser2::TrackDumper::RichSeqMaker",
         "mtime" : 1347937119,
         "size" : 3506,
         "used" : [
            "Bio::Location::Fuzzy",
            "Bio::Location::Simple",
            "Bio::Location::Split",
            "Bio::PrimarySeq",
            "Bio::Seq::RichSeq",
            "Bio::SeqFeature::Generic",
            "POSIX",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/UserDB.pm" : {
         "module" : "Bio::Graphics::Browser2::UserDB",
         "mtime" : 1347937121,
         "required_in_eval" : [
            "LWP::UserAgent",
            "Net::OpenID::Consumer",
            "Net::SMTP"
         ],
         "size" : 44189,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::SendMail",
            "CGI",
            "Carp",
            "DBI",
            "Digest::MD5",
            "Digest::SHA",
            "JSON",
            "Text::ParseWords",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/UserTracks.pm" : {
         "module" : "Bio::Graphics::Browser2::AdminTracks",
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Bio::DB::BigWig",
            "Bio::Graphics::Browser2::DataLoader::bam",
            "LWP::UserAgent"
         ],
         "size" : 31414,
         "used" : [
            "Bio::Graphics::Browser2::DataLoader",
            "Bio::Graphics::Browser2::DataSource",
            "Bio::Graphics::Browser2::UserTracks",
            "Bio::Graphics::Browser2::UserTracks::Database",
            "Bio::Graphics::Browser2::UserTracks::Filesystem",
            "CGI",
            "Carp",
            "Data::Dumper",
            "File::Basename",
            "File::Copy",
            "File::Path",
            "File::Spec",
            "File::Temp",
            "IO::File",
            "IO::String",
            "POSIX",
            "Symbol",
            "Tie::Handle",
            "constant",
            "strict"
         ],
         "used_in_eval" : [
            "IO::Pipe"
         ]
      },
      "lib/Bio/Graphics/Browser2/UserTracks/Database.pm" : {
         "module" : "Bio::Graphics::Browser2::UserTracks::Database",
         "mtime" : 1347937121,
         "size" : 27207,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::SendMail",
            "Bio::Graphics::Browser2::UserDB",
            "Bio::Graphics::Browser2::UserTracks",
            "CGI",
            "Carp",
            "DBI",
            "Digest::MD5",
            "File::Path",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/UserTracks/Filesystem.pm" : {
         "module" : "Bio::Graphics::Browser2::UserTracks::Filesystem",
         "mtime" : 1347937119,
         "size" : 6449,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::UserTracks",
            "Carp",
            "Cwd",
            "File::Path",
            "File::Spec",
            "strict"
         ]
      },
      "lib/Bio/Graphics/Browser2/Util.pm" : {
         "module" : "Bio::Graphics::Browser2::Util",
         "mtime" : 1347937119,
         "size" : 4376,
         "used" : [
            "Carp",
            "Digest::MD5",
            "Exporter",
            "Text::ParseWords",
            "constant",
            "strict"
         ]
      },
      "lib/Bio/Graphics/GBrowseFeature.pm" : {
         "module" : "Bio::Graphics::GBrowseFeature",
         "mtime" : 1347937121,
         "size" : 304,
         "used" : [
            "Bio::Graphics::Feature",
            "strict",
            "warnings"
         ]
      },
      "lib/Bio/Graphics/Karyotype.pm" : {
         "module" : "Bio::Graphics::Karyotype",
         "mtime" : 1347937120,
         "size" : 11524,
         "used" : [
            "Bio::Graphics::Panel",
            "CGI",
            "Carp",
            "GD",
            "constant",
            "strict"
         ]
      },
      "lib/CGI/Toggle.pm" : {
         "module" : "CGI::Toggle",
         "mtime" : 1347937118,
         "size" : 5290,
         "used" : [
            "CGI",
            "Exporter",
            "constant",
            "strict"
         ]
      },
      "lib/Legacy/DB/SyntenyBlock.pm" : {
         "module" : "Legacy::DB::SyntenyBlock",
         "mtime" : 1347937120,
         "size" : 2622,
         "used" : [
            "constant",
            "strict"
         ]
      },
      "lib/Legacy/DB/SyntenyIO.pm" : {
         "module" : "Legacy::DB::SyntenyIO",
         "mtime" : 1347937121,
         "size" : 5390,
         "used" : [
            "Bio::DB::GFF::Util::Binning",
            "Bio::DB::GFF::Util::Rearrange",
            "DBI",
            "Legacy::DB::SyntenyBlock",
            "constant",
            "strict"
         ]
      },
      "lib/Legacy/Graphics/Browser.pm" : {
         "module" : "Legacy::Graphics::Browser",
         "mtime" : 1347937120,
         "required" : [
            "Apache2::RequestUtil",
            "Apache2::ServerUtil",
            "Apache2::SubRequest",
            "Exporter"
         ],
         "size" : 106186,
         "used" : [
            "Bio::Graphics",
            "Bio::Graphics::Browser2",
            "Bio::Graphics::FeatureFile",
            "CGI",
            "CGI::Toggle",
            "Carp",
            "Digest::MD5",
            "File::Basename",
            "File::Path",
            "IO::File",
            "Legacy::Graphics::Browser::I18n",
            "Legacy::Graphics::Browser::Util",
            "Socket",
            "constant",
            "strict",
            "vars"
         ]
      },
      "lib/Legacy/Graphics/Browser/I18n.pm" : {
         "module" : "Legacy::Graphics::Browser::I18n",
         "mtime" : 1347937121,
         "size" : 1509,
         "used" : [
            "strict"
         ]
      },
      "lib/Legacy/Graphics/Browser/PageSettings.pm" : {
         "module" : "Legacy::Graphics::Browser::PageSettings",
         "mtime" : 1347937121,
         "size" : 1628,
         "used" : [
            "CGI::Session",
            "Legacy::Graphics::Browser::Util",
            "constant",
            "strict"
         ]
      },
      "lib/Legacy/Graphics/Browser/Synteny.pm" : {
         "module" : "Legacy::Graphics::Browser::Synteny",
         "mtime" : 1347937121,
         "size" : 26295,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Root::RootI",
            "CGI",
            "CGI::Carp",
            "CGI::Toggle",
            "GD",
            "Legacy::Graphics::Browser",
            "Legacy::Graphics::Browser::Util",
            "constant",
            "strict",
            "vars"
         ]
      },
      "lib/Legacy/Graphics/Browser/Util.pm" : {
         "module" : "Legacy::Graphics::Browser::Util",
         "mtime" : 1347937121,
         "required" : [
            "Bio::Perl",
            "Exporter"
         ],
         "size" : 16766,
         "used" : [
            "Bio::DB::GFF",
            "Bio::DB::GFF::Adaptor::memory",
            "CGI",
            "CGI::Toggle",
            "Carp",
            "Legacy::Graphics::Browser",
            "Legacy::Graphics::Browser::I18n",
            "Text::ParseWords",
            "constant",
            "strict",
            "vars"
         ]
      },
      "libalign/CAlign.pm" : {
         "mtime" : 1347937121,
         "size" : 1123
      },
      "libalign/CAlign.xs" : {
         "mtime" : 1347937121,
         "size" : 6099
      },
      "libalign/Changes" : {
         "mtime" : 1347937119,
         "size" : 51
      },
      "libalign/README" : {
         "mtime" : 1347937121,
         "size" : 711
      },
      "libalign/realign.h" : {
         "mtime" : 1347937118,
         "size" : 709
      },
      "sample_data/admin_uploads/README" : {
         "mtime" : 1347937121,
         "size" : 144
      },
      "sample_data/gbrowse_syn/alignments/rice.aln.gz" : {
         "mtime" : 1347937119,
         "size" : 818186
      },
      "sample_data/gbrowse_syn/rice/rice.gff3" : {
         "mtime" : 1347937120,
         "size" : 235531
      },
      "sample_data/gbrowse_syn/wild_rice/wild_rice.gff3" : {
         "mtime" : 1347937120,
         "size" : 242439
      },
      "sample_data/ideograms/human_cytobands.gff" : {
         "mtime" : 1347937120,
         "size" : 81961
      },
      "sample_data/ideograms/mouse_cytobands.gff" : {
         "mtime" : 1347937121,
         "size" : 38809
      },
      "sample_data/ideograms/rat_cytobands.gff" : {
         "mtime" : 1347937118,
         "size" : 23546
      },
      "sample_data/pop_demo/pop_demo.gff3" : {
         "mtime" : 1347937121,
         "size" : 490
      },
      "sample_data/yeast_chr1+2/yeast_chr1+2.gff3" : {
         "mtime" : 1347937122,
         "size" : 312303
      },
      "sample_data/yeast_scaffolds/chr1.fa" : {
         "mtime" : 1347937119,
         "size" : 234051
      },
      "sample_data/yeast_scaffolds/chr2.fa" : {
         "mtime" : 1347937119,
         "size" : 826738
      },
      "sample_data/yeast_scaffolds/chromosomes.gff3" : {
         "mtime" : 1347937119,
         "size" : 192
      },
      "t/00.compile.t" : {
         "mtime" : 1347937121,
         "size" : 2073,
         "used" : [
            "Capture::Tiny",
            "File::Basename",
            "File::Spec",
            "FindBin",
            "Module::Build",
            "Test::More",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "t/01.yeast.t" : {
         "mtime" : 1347937120,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1045,
         "used" : [
            "Bio::DB::SeqFeature::Store",
            "Bio::Root::IO",
            "ExtUtils::MakeMaker",
            "FindBin",
            "Test",
            "constant",
            "lib",
            "strict"
         ]
      },
      "t/02.rearchitecture.t" : {
         "mtime" : 1347937120,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 9322,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Root::IO",
            "File::Path",
            "File::Spec",
            "FindBin",
            "IO::String",
            "Module::Build",
            "TemplateCopy",
            "Test",
            "constant",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "t/03.render.t" : {
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 17483,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::Render::HTML",
            "Bio::Graphics::Browser2::Render::Slave",
            "Bio::Graphics::FeatureFile",
            "Bio::Root::IO",
            "CGI",
            "File::Path",
            "FindBin",
            "IO::String",
            "Module::Build",
            "POSIX",
            "TemplateCopy",
            "Test",
            "constant",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "t/04.remoteserver.t" : {
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 4883,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::Render::HTML",
            "Bio::Graphics::Browser2::Render::Slave",
            "Bio::Root::IO",
            "CGI",
            "File::Path",
            "FindBin",
            "HTTP::Request::Common",
            "IO::String",
            "LWP::UserAgent",
            "Module::Build",
            "Storable",
            "TemplateCopy",
            "Test",
            "constant",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "t/05.deferredrendering.t" : {
         "mtime" : 1347937119,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 4891,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::Render::HTML",
            "Bio::Graphics::Browser2::Render::Slave",
            "Bio::Graphics::FeatureFile",
            "Bio::Root::IO",
            "CGI",
            "File::Path",
            "FindBin",
            "HTTP::Request::Common",
            "IO::String",
            "LWP::UserAgent",
            "Module::Build",
            "Storable",
            "TemplateCopy",
            "Test",
            "constant",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "t/06.featuresearch.t" : {
         "mtime" : 1347937121,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 5194,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::Region",
            "Bio::Graphics::Browser2::RegionSearch",
            "Bio::Graphics::Browser2::Render::Slave",
            "Bio::Root::IO",
            "CGI",
            "File::Path",
            "FindBin",
            "IO::String",
            "Module::Build",
            "TemplateCopy",
            "Test",
            "constant",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "t/07.karyotype.t" : {
         "mtime" : 1347937120,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2884,
         "used" : [
            "Bio::Graphics::Browser2",
            "Bio::Graphics::Browser2::I18n",
            "Bio::Graphics::Karyotype",
            "Bio::Root::IO",
            "CGI",
            "File::Path",
            "FindBin",
            "IO::String",
            "Module::Build",
            "TemplateCopy",
            "Test",
            "constant",
            "lib",
            "strict",
            "warnings"
         ]
      },
      "t/08.calign.t" : {
         "mtime" : 1347937118,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 888,
         "used" : [
            "Bio::Graphics::Browser2::Realign",
            "Bio::Root::IO",
            "ExtUtils::MakeMaker",
            "FindBin",
            "Test",
            "constant",
            "lib",
            "strict"
         ]
      },
      "t/Test.pm" : {
         "mtime" : 1347937121,
         "size" : 7460
      },
      "t/testdata/TemplateCopy.pm" : {
         "mtime" : 1347937119,
         "size" : 576
      },
      "t/testdata/conf/GBrowse.conf" : {
         "mtime" : 1347937119,
         "size" : 3270
      },
      "t/testdata/conf/WHERE_ARE_THE_CONF_FILES.txt" : {
         "mtime" : 1347937118,
         "size" : 258
      },
      "t/testdata/conf/enzymes.txt" : {
         "mtime" : 1347937119,
         "size" : 2711
      },
      "t/testdata/conf/languages/POSIX.pm" : {
         "mtime" : 1347937119,
         "size" : 29191
      },
      "t/testdata/conf/languages/fr.pm" : {
         "mtime" : 1347937121,
         "size" : 10605
      },
      "t/testdata/conf/templates/volvox_final.conf" : {
         "mtime" : 1347937120,
         "size" : 7577
      },
      "t/testdata/conf/templates/yeast_chr1.conf" : {
         "mtime" : 1347937121,
         "size" : 4130
      },
      "t/testdata/data/volvox/volvox.gff" : {
         "mtime" : 1347937121,
         "size" : 6331
      },
      "t/testdata/data/volvox2/volvox2.gff" : {
         "mtime" : 1347937121,
         "size" : 2213
      },
      "t/testdata/data/volvox3/volvox3.gff" : {
         "mtime" : 1347937121,
         "size" : 1067
      },
      "t/testdata/data/volvox4/volvox4.gff" : {
         "mtime" : 1347937121,
         "size" : 945
      },
      "t/testdata/phylo_align/phyloalign.fa" : {
         "mtime" : 1347937118,
         "size" : 10388
      },
      "t/testdata/phylo_align/readme.txt" : {
         "mtime" : 1347937120,
         "size" : 1602
      },
      "t/testdata/phylo_align/species.tre" : {
         "mtime" : 1347937120,
         "size" : 50
      },
      "t/testdata/phylo_align/volvox_alignment.conf" : {
         "mtime" : 1347937120,
         "size" : 587
      },
      "t/testdata/phylo_align/volvox_phyloalign.gff" : {
         "mtime" : 1347937120,
         "size" : 132455
      }
   },
   "got_prereq_from" : "META.yml",
   "kwalitee" : {
      "buildtool_not_executable" : 1,
      "consistent_version" : 0,
      "distname_matches_name_in_meta" : 1,
      "extractable" : 1,
      "extracts_nicely" : 1,
      "has_abstract_in_pod" : 1,
      "has_buildtool" : 1,
      "has_changelog" : 1,
      "has_human_readable_license" : 1,
      "has_known_license_in_source_file" : 1,
      "has_license_in_source_file" : 1,
      "has_manifest" : 1,
      "has_meta_yml" : 1,
      "has_proper_version" : 1,
      "has_readme" : 1,
      "has_separate_license_file" : 1,
      "has_tests" : 1,
      "has_tests_in_t_dir" : 1,
      "has_version" : 1,
      "kwalitee" : "90.91",
      "manifest_matches_dist" : 1,
      "meta_json_conforms_to_known_spec" : 1,
      "meta_json_is_parsable" : 1,
      "meta_yml_conforms_to_known_spec" : 1,
      "meta_yml_declares_perl_version" : 1,
      "meta_yml_has_license" : 1,
      "meta_yml_has_provides" : 1,
      "meta_yml_has_repository_resource" : 0,
      "meta_yml_is_parsable" : 1,
      "no_abstract_stub_in_pod" : 1,
      "no_broken_auto_install" : 1,
      "no_broken_module_install" : 1,
      "no_dot_dirs" : 1,
      "no_dot_underscore_files" : 1,
      "no_generated_files" : 1,
      "no_invalid_versions" : 1,
      "no_local_dirs" : 1,
      "no_mymeta_files" : 1,
      "no_pax_headers" : 1,
      "no_pod_errors" : 0,
      "no_stdin_for_prompting" : 1,
      "no_symlinks" : 1,
      "package_version_matches_dist_version" : 1,
      "portable_filenames" : 1,
      "proper_libs" : 1,
      "use_strict" : 0,
      "use_warnings" : 0,
      "valid_signature" : 1
   },
   "latest_mtime" : 1347937122,
   "license" : "perl defined in META.yml defined in LICENSE",
   "license_file" : "bin/gtf2gff3.pl",
   "license_from_yaml" : "perl",
   "license_in_pod" : 1,
   "license_type" : "Perl_5",
   "licenses" : {
      "Perl_5" : [
         "bin/gtf2gff3.pl"
      ]
   },
   "manifest_matches_dist" : 1,
   "meta_json_is_parsable" : 1,
   "meta_json_spec_version" : "2",
   "meta_yml" : {
      "abstract" : "The GMOD Generic Genome Browser",
      "author" : [
         "Lincoln Stein <lincoln.stein@gmail.com>"
      ],
      "build_requires" : {
         "Capture::Tiny" : "0",
         "ExtUtils::CBuilder" : "0"
      },
      "configure_requires" : {
         "Module::Build" : "0.38"
      },
      "dynamic_config" : "1",
      "generated_by" : "Module::Build version 0.38, CPAN::Meta::Converter version 2.110440",
      "license" : "perl",
      "meta-spec" : {
         "url" : "http://module-build.sourceforge.net/META-spec-v1.4.html",
         "version" : "1.4"
      },
      "name" : "GBrowse",
      "provides" : {
         "Bio::DB::GFF::Aggregator::match_gap" : {
            "file" : "lib/Bio/DB/GFF/Aggregator/match_gap.pm",
            "version" : "0"
         },
         "Bio::DB::GFF::Aggregator::reftranscript" : {
            "file" : "lib/Bio/DB/GFF/Aggregator/reftranscript.pm",
            "version" : "0.10"
         },
         "Bio::DB::GFF::Aggregator::waba_alignment" : {
            "file" : "lib/Bio/DB/GFF/Aggregator/waba_alignment.pm",
            "version" : "0.20"
         },
         "Bio::DB::GFF::Aggregator::wormbase_gene" : {
            "file" : "lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm",
            "version" : "0.30"
         },
         "Bio::DB::SeqFeature::Store::Alias" : {
            "file" : "lib/Bio/DB/SeqFeature/Store/Alias.pm",
            "version" : "0"
         },
         "Bio::DB::SeqFeature::Store::Alias::Iterator" : {
            "file" : "lib/Bio/DB/SeqFeature/Store/Alias.pm",
            "version" : "0"
         },
         "Bio::DB::SeqFeature::Store::Alias::Segment" : {
            "file" : "lib/Bio/DB/SeqFeature/Store/Alias.pm",
            "version" : "0"
         },
         "Bio::DB::SeqFeature::Store::BedLoader" : {
            "file" : "lib/Bio/DB/SeqFeature/Store/BedLoader.pm",
            "version" : "0"
         },
         "Bio::DB::Tagger" : {
            "file" : "lib/Bio/DB/Tagger.pm",
            "version" : "1.00"
         },
         "Bio::DB::Tagger::Iterator" : {
            "file" : "lib/Bio/DB/Tagger.pm",
            "version" : "0"
         },
         "Bio::DB::Tagger::Tag" : {
            "file" : "lib/Bio/DB/Tagger/Tag.pm",
            "version" : "0"
         },
         "Bio::DB::Tagger::mysql" : {
            "file" : "lib/Bio/DB/Tagger/mysql.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2" : {
            "file" : "lib/Bio/Graphics/Browser2.pm",
            "version" : "2.51"
         },
         "Bio::Graphics::Browser2::Action" : {
            "file" : "lib/Bio/Graphics/Browser2/Action.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::AdminTracks" : {
            "file" : "lib/Bio/Graphics/Browser2/UserTracks.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::AuthorizedFeatureFile" : {
            "file" : "lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::CAlign" : {
            "file" : "lib/Bio/Graphics/Browser2/CAlign.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::CachedTrack" : {
            "file" : "lib/Bio/Graphics/Browser2/CachedTrack.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataBase" : {
            "file" : "lib/Bio/Graphics/Browser2/DataBase.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::bam" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/bam.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::bed" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/bed.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::bigwig" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/bigwig.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::featurefile" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::generic" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/generic.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::gff" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/gff.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::gff3" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/gff3.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::sam" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/sam.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::wig2bigwig" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataLoader::wiggle" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::DataSource" : {
            "file" : "lib/Bio/Graphics/Browser2/DataSource.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::ExternalData" : {
            "file" : "lib/Bio/Graphics/Browser2/ExternalData.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::GFFhelper" : {
            "file" : "lib/Bio/Graphics/Browser2/GFFhelper.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::I18n" : {
            "file" : "lib/Bio/Graphics/Browser2/I18n.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Markup" : {
            "file" : "lib/Bio/Graphics/Browser2/Markup.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::MetaDB" : {
            "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::MetaSegment" : {
            "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::MetaSegment::Iterator" : {
            "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::OptionPick" : {
            "file" : "lib/Bio/Graphics/Browser2/OptionPick.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::PadAlignment" : {
            "file" : "lib/Bio/Graphics/Browser2/PadAlignment.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Plugin" : {
            "file" : "lib/Bio/Graphics/Browser2/Plugin.pm",
            "version" : "0.30"
         },
         "Bio::Graphics::Browser2::Plugin::AuthPlugin" : {
            "file" : "lib/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::PluginSet" : {
            "file" : "lib/Bio/Graphics/Browser2/PluginSet.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Realign" : {
            "file" : "lib/Bio/Graphics/Browser2/Realign.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Region" : {
            "file" : "lib/Bio/Graphics/Browser2/Region.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::RegionSearch" : {
            "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::RemoteSet" : {
            "file" : "lib/Bio/Graphics/Browser2/RemoteSet.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render" : {
            "file" : "lib/Bio/Graphics/Browser2/Render.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::HTML" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/HTML.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::HTML::TrackListing" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::HTML::TrackListing::Categories" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::Login" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/Login.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::Slave" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/Slave.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::Slave::Status" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/Slave/Status.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::SnapshotManager" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/SnapshotManager.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Render::TrackConfig" : {
            "file" : "lib/Bio/Graphics/Browser2/Render/TrackConfig.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::RenderPanels" : {
            "file" : "lib/Bio/Graphics/Browser2/RenderPanels.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::SendMail" : {
            "file" : "lib/Bio/Graphics/Browser2/SendMail.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Session" : {
            "file" : "lib/Bio/Graphics/Browser2/Session.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Shellwords" : {
            "file" : "lib/Bio/Graphics/Browser2/Shellwords.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::SubtrackTable" : {
            "file" : "lib/Bio/Graphics/Browser2/SubtrackTable.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::TrackDumper" : {
            "file" : "lib/Bio/Graphics/Browser2/TrackDumper.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::TrackDumper::RichSeqMaker" : {
            "file" : "lib/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::UserConf" : {
            "file" : "lib/Bio/Graphics/Browser2/UserTracks.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::UserDB" : {
            "file" : "lib/Bio/Graphics/Browser2/UserDB.pm",
            "version" : "0.5"
         },
         "Bio::Graphics::Browser2::UserTracks" : {
            "file" : "lib/Bio/Graphics/Browser2/UserTracks.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::UserTracks::Database" : {
            "file" : "lib/Bio/Graphics/Browser2/UserTracks/Database.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::UserTracks::Filesystem" : {
            "file" : "lib/Bio/Graphics/Browser2/UserTracks/Filesystem.pm",
            "version" : "0"
         },
         "Bio::Graphics::Browser2::Util" : {
            "file" : "lib/Bio/Graphics/Browser2/Util.pm",
            "version" : "0"
         },
         "Bio::Graphics::GBrowseFeature" : {
            "file" : "lib/Bio/Graphics/GBrowseFeature.pm",
            "version" : "0"
         },
         "Bio::Graphics::Karyotype" : {
            "file" : "lib/Bio/Graphics/Karyotype.pm",
            "version" : "0"
         },
         "Bio::Graphics::Wiggle::Loader::Nosample" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm",
            "version" : "0"
         },
         "CGI::Toggle" : {
            "file" : "lib/CGI/Toggle.pm",
            "version" : "0"
         },
         "FakeHomol" : {
            "file" : "lib/Bio/Graphics/Browser2/GFFhelper.pm",
            "version" : "0"
         },
         "LRUCache" : {
            "file" : "lib/Bio/Graphics/Browser2/DataBase.pm",
            "version" : "0"
         },
         "Legacy::DB::SyntenyBlock" : {
            "file" : "lib/Legacy/DB/SyntenyBlock.pm",
            "version" : "0"
         },
         "Legacy::DB::SyntenyIO" : {
            "file" : "lib/Legacy/DB/SyntenyIO.pm",
            "version" : "0"
         },
         "Legacy::Graphics::Browser" : {
            "file" : "lib/Legacy/Graphics/Browser.pm",
            "version" : "1.17"
         },
         "Legacy::Graphics::Browser::I18n" : {
            "file" : "lib/Legacy/Graphics/Browser/I18n.pm",
            "version" : "1.01"
         },
         "Legacy::Graphics::Browser::PageSettings" : {
            "file" : "lib/Legacy/Graphics/Browser/PageSettings.pm",
            "version" : "0"
         },
         "Legacy::Graphics::Browser::Synteny" : {
            "file" : "lib/Legacy/Graphics/Browser/Synteny.pm",
            "version" : "0.01"
         },
         "Legacy::Graphics::Browser::Util" : {
            "file" : "lib/Legacy/Graphics/Browser/Util.pm",
            "version" : "0"
         },
         "Legacy::Graphics::BrowserConfig" : {
            "file" : "lib/Legacy/Graphics/Browser.pm",
            "version" : "0"
         },
         "MyFeatureFileLoader" : {
            "file" : "lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm",
            "version" : "0"
         }
      },
      "recommends" : {
         "Bio::DB::BigFile" : "1",
         "Bio::DB::Sam" : "1.36",
         "Bio::Das" : "0",
         "Crypt::SSLeay" : "0",
         "DBD::Pg" : "0",
         "DBD::SQLite" : "0",
         "DBD::mysql" : "0",
         "DBI" : "0",
         "DB_File::Lock" : "0",
         "Digest::SHA" : "0",
         "FCGI" : "0",
         "File::NFSLock" : "0",
         "GD::SVG" : "0",
         "Math::BigInt" : "0",
         "Net::OpenID::Consumer" : "0",
         "Net::SMTP::SSL" : "0",
         "Template" : "2.2",
         "Term::ReadKey" : "0"
      },
      "requires" : {
         "Bio::Graphics" : "2.28",
         "Bio::Root::Version" : "1.0069",
         "CGI::Session" : "4.02",
         "Date::Parse" : "0",
         "Digest::MD5" : "0",
         "Digest::SHA" : "0",
         "ExtUtils::CBuilder" : "0",
         "File::Temp" : "0",
         "GD" : "2.07",
         "IO::String" : "0",
         "JSON" : "0",
         "LWP" : "0",
         "Statistics::Descriptive" : "0",
         "Storable" : "0",
         "Term::ReadKey" : "0",
         "Text::ParseWords" : "3.27",
         "Time::HiRes" : "0",
         "perl" : "5.008"
      },
      "resources" : {
         "license" : "http://dev.perl.org/licenses/"
      },
      "version" : "2.51"
   },
   "meta_yml_is_parsable" : 1,
   "meta_yml_spec_version" : "1.4",
   "modules" : [
      {
         "file" : "lib/Legacy/DB/SyntenyBlock.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::DB::SyntenyBlock"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataSource.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataSource"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/gff.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::gff"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/PadAlignment.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::PadAlignment"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/Slave/Status.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::Slave::Status"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/HTML.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::HTML"
      },
      {
         "file" : "lib/Bio/Graphics/GBrowseFeature.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::GBrowseFeature"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Action.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Action"
      },
      {
         "file" : "lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::GFF::Aggregator::wormbase_gene"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/SubtrackTable.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::SubtrackTable"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/sam.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::sam"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataBase.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataBase"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2"
      },
      {
         "file" : "lib/Bio/DB/Tagger.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::Tagger::Iterator"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Util.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Util"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/SnapshotManager.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::SnapshotManager"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::TrackDumper::RichSeqMaker"
      },
      {
         "file" : "lib/Legacy/Graphics/Browser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::Graphics::BrowserConfig"
      },
      {
         "file" : "lib/Bio/Graphics/Karyotype.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Karyotype"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Session.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Session"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::MetaDB"
      },
      {
         "file" : "lib/Bio/DB/GFF/Aggregator/reftranscript.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::GFF::Aggregator::reftranscript"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataBase.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "LRUCache"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/CachedTrack.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::CachedTrack"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::HTML::TrackListing::Categories"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/UserTracks/Filesystem.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::UserTracks::Filesystem"
      },
      {
         "file" : "lib/Bio/DB/GFF/Aggregator/waba_alignment.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::GFF::Aggregator::waba_alignment"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/TrackDumper.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::TrackDumper"
      },
      {
         "file" : "lib/Bio/DB/Tagger.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::Tagger"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/generic.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::generic"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Realign.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Realign"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Plugin::AuthPlugin"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/Slave.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::Slave"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/UserTracks.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::UserTracks"
      },
      {
         "file" : "lib/Legacy/Graphics/Browser/Util.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::Graphics::Browser::Util"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/RemoteSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::RemoteSet"
      },
      {
         "file" : "lib/CGI/Toggle.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "CGI::Toggle"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::MetaSegment"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::wiggle"
      },
      {
         "file" : "lib/Bio/DB/SeqFeature/Store/Alias.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::SeqFeature::Store::Alias"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Plugin.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Plugin"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/bigwig.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::bigwig"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render"
      },
      {
         "file" : "lib/Bio/DB/SeqFeature/Store/Alias.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::SeqFeature::Store::Alias::Iterator"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "MyFeatureFileLoader"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Region.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Region"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/ExternalData.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::ExternalData"
      },
      {
         "file" : "lib/Legacy/Graphics/Browser/I18n.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::Graphics::Browser::I18n"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::HTML::TrackListing"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/bam.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::bam"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::RegionSearch"
      },
      {
         "file" : "lib/Bio/DB/Tagger/mysql.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::Tagger::mysql"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::featurefile"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/PluginSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::PluginSet"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/GFFhelper.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::GFFhelper"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/Login.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::Login"
      },
      {
         "file" : "lib/Bio/DB/GFF/Aggregator/match_gap.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::GFF::Aggregator::match_gap"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/I18n.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::I18n"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::wig2bigwig"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Wiggle::Loader::Nosample"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/UserDB.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::UserDB"
      },
      {
         "file" : "lib/Legacy/Graphics/Browser/Synteny.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::Graphics::Browser::Synteny"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/UserTracks.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::UserConf"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::AuthorizedFeatureFile"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/RegionSearch.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::MetaSegment::Iterator"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/SendMail.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::SendMail"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/UserTracks/Database.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::UserTracks::Database"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/bed.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::bed"
      },
      {
         "file" : "lib/Legacy/Graphics/Browser/PageSettings.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::Graphics::Browser::PageSettings"
      },
      {
         "file" : "lib/Bio/DB/SeqFeature/Store/BedLoader.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::SeqFeature::Store::BedLoader"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Render/TrackConfig.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Render::TrackConfig"
      },
      {
         "file" : "lib/Legacy/Graphics/Browser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::Graphics::Browser"
      },
      {
         "file" : "lib/Legacy/DB/SyntenyIO.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Legacy::DB::SyntenyIO"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/DataLoader/gff3.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::DataLoader::gff3"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/GFFhelper.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "FakeHomol"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Shellwords.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Shellwords"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/Markup.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::Markup"
      },
      {
         "file" : "lib/Bio/DB/SeqFeature/Store/Alias.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::SeqFeature::Store::Alias::Segment"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/OptionPick.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::OptionPick"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/UserTracks.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::AdminTracks"
      },
      {
         "file" : "lib/Bio/DB/Tagger/Tag.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::DB::Tagger::Tag"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/RenderPanels.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::RenderPanels"
      },
      {
         "file" : "lib/Bio/Graphics/Browser2/CAlign.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "Bio::Graphics::Browser2::CAlign"
      }
   ],
   "needs_compiler" : 1,
   "no_pax_headers" : 1,
   "package" : "GBrowse-2.51.tar.gz",
   "prereq" : [
      {
         "is_optional_prereq" : 1,
         "requires" : "DBD::SQLite",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "ExtUtils::CBuilder",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_build_prereq" : 1,
         "requires" : "ExtUtils::CBuilder",
         "type" : "build_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "File::NFSLock",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_build_prereq" : 1,
         "requires" : "Capture::Tiny",
         "type" : "build_requires",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "Storable",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Net::OpenID::Consumer",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "perl",
         "type" : "runtime_requires",
         "version" : "5.008"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "DBI",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Bio::DB::Sam",
         "type" : "runtime_recommends",
         "version" : "1.36"
      },
      {
         "is_prereq" : 1,
         "requires" : "Term::ReadKey",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Term::ReadKey",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Math::BigInt",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "JSON",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "Digest::MD5",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "DB_File::Lock",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "requires" : "Module::Build",
         "type" : "configure_requires",
         "version" : "0.38"
      },
      {
         "is_prereq" : 1,
         "requires" : "Digest::SHA",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Digest::SHA",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "DBD::mysql",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "LWP",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Crypt::SSLeay",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "Bio::Root::Version",
         "type" : "runtime_requires",
         "version" : "1.0069"
      },
      {
         "is_prereq" : 1,
         "requires" : "Time::HiRes",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Net::SMTP::SSL",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Bio::Das",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "Statistics::Descriptive",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Bio::DB::BigFile",
         "type" : "runtime_recommends",
         "version" : "1"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "FCGI",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "GD::SVG",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "File::Temp",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "CGI::Session",
         "type" : "runtime_requires",
         "version" : "4.02"
      },
      {
         "is_prereq" : 1,
         "requires" : "GD",
         "type" : "runtime_requires",
         "version" : "2.07"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "DBD::Pg",
         "type" : "runtime_recommends",
         "version" : "0"
      },
      {
         "is_optional_prereq" : 1,
         "requires" : "Template",
         "type" : "runtime_recommends",
         "version" : "2.2"
      },
      {
         "is_prereq" : 1,
         "requires" : "Bio::Graphics",
         "type" : "runtime_requires",
         "version" : "2.28"
      },
      {
         "is_prereq" : 1,
         "requires" : "Date::Parse",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "IO::String",
         "type" : "runtime_requires",
         "version" : "0"
      },
      {
         "is_prereq" : 1,
         "requires" : "Text::ParseWords",
         "type" : "runtime_requires",
         "version" : "3.27"
      }
   ],
   "released_epoch" : 1347937291,
   "size_packed" : 5526433,
   "size_unpacked" : 13044496,
   "unknown_license_texts" : {
      "docs/pod/INSTALL.MacOSX.pod" : "=head1 Copyright information\n\nMaterial in this document is copyright 2001-2003 by the Cold Spring\nHarbor Laboratory. This information is provided \"AS-IS\" without any\nwarranty, expressed or implied.\n\n$Id: INSTALL.MacOSX.pod,v 1.3 2003-12-01 18:15:08 scottcain Exp $\n\n"
   },
   "uses" : {
      "noed_in_code" : {
         "strict" : 1,
         "track" : 1,
         "warnings" : 10
      },
      "required_in_code" : {
         "Apache2::RequestUtil" : 3,
         "Apache2::ServerUtil" : 3,
         "Apache2::SubRequest" : 3,
         "Bio::Perl" : 1,
         "DynaLoader" : 1,
         "Exporter" : 5,
         "File::Temp" : 1,
         "Text::ParseWords" : 1
      },
      "required_in_config" : {
         "5.008" : 1,
         "CPAN" : 1,
         "Cwd" : 1,
         "ExtUtils::MakeMaker" : 1,
         "File::Spec" : 1,
         "GBrowseInstall" : 1
      },
      "required_in_eval_in_code" : {
         "Apache::SubProcess" : 1,
         "Bio::DB::BigWig" : 4,
         "Bio::DB::Fasta" : 2,
         "Bio::DB::Sam" : 3,
         "Bio::DB::Sam::SamToGBrowse" : 1,
         "Bio::DB::SeqFeature::Store::DBI::SQLite" : 1,
         "Bio::DB::SeqFeature::Store::berkeleydb" : 1,
         "Bio::Das" : 1,
         "Bio::Graphics::Browser2::TrackConfig" : 1,
         "Bio::Graphics::Wiggle::Loader" : 1,
         "Bio::SeqIO" : 1,
         "DBD::mysql" : 1,
         "DBI" : 3,
         "DB_File" : 1,
         "DB_File::Lock" : 1,
         "FCGI" : 1,
         "File::NFSLock" : 1,
         "GD::SVG" : 2,
         "IO::Pipe" : 4,
         "IO::Select" : 4,
         "IO::String" : 3,
         "LWP" : 1,
         "LWP::UserAgent" : 11,
         "Net::OpenID::Consumer" : 1,
         "Net::SMTP" : 1,
         "Storable" : 2,
         "Time::HiRes" : 1
      },
      "used_in_code" : {
         "5.005" : 1,
         "Bio::DB::BigWig" : 2,
         "Bio::DB::GFF" : 1,
         "Bio::DB::GFF::Adaptor::memory" : 1,
         "Bio::DB::GFF::Aggregator" : 4,
         "Bio::DB::GFF::Homol" : 2,
         "Bio::DB::GFF::Util::Binning" : 1,
         "Bio::DB::GFF::Util::Rearrange" : 1,
         "Bio::DB::Sam" : 1,
         "Bio::DB::SeqFeature::Store" : 5,
         "Bio::DB::SeqFeature::Store::FeatureFileLoader" : 2,
         "Bio::DB::SeqFeature::Store::GFF3Loader" : 1,
         "Bio::DB::SeqFeature::Store::LoadHelper" : 1,
         "Bio::Graphics" : 4,
         "Bio::Graphics::Feature" : 1,
         "Bio::Graphics::FeatureFile" : 4,
         "Bio::Graphics::Glyph::heat_map" : 1,
         "Bio::Graphics::Panel" : 3,
         "Bio::Graphics::Wiggle" : 1,
         "Bio::Graphics::Wiggle::Loader" : 2,
         "Bio::Location::Fuzzy" : 1,
         "Bio::Location::Simple" : 1,
         "Bio::Location::Split" : 1,
         "Bio::PrimarySeq" : 1,
         "Bio::Root::Root" : 2,
         "Bio::Root::RootI" : 1,
         "Bio::Seq::RichSeq" : 1,
         "Bio::SeqFeature::Generic" : 3,
         "Bio::SeqFeatureI" : 1,
         "Bio::SeqIO" : 1,
         "CGI" : 32,
         "CGI::Carp" : 1,
         "CGI::Cookie" : 1,
         "CGI::Session" : 2,
         "Carp" : 46,
         "Cwd" : 1,
         "DBI" : 6,
         "DB_File" : 1,
         "Data::Dumper" : 13,
         "Digest::MD5" : 16,
         "Digest::SHA" : 2,
         "English" : 1,
         "Exporter" : 3,
         "Fcntl" : 5,
         "File::Basename" : 17,
         "File::Copy" : 3,
         "File::Path" : 15,
         "File::Spec" : 10,
         "File::Temp" : 3,
         "GBrowse::ConfigData" : 1,
         "GD" : 3,
         "HTTP::Daemon" : 1,
         "HTTP::Request::Common" : 4,
         "IO::File" : 13,
         "IO::String" : 8,
         "JSON" : 5,
         "LWP::UserAgent" : 4,
         "POSIX" : 9,
         "Socket" : 3,
         "Storable" : 11,
         "Symbol" : 3,
         "Text::ParseWords" : 9,
         "Text::Tabs" : 2,
         "Tie::Handle" : 3,
         "Time::HiRes" : 2,
         "constant" : 125,
         "overload" : 1,
         "strict" : 84,
         "vars" : 15,
         "warnings" : 26
      },
      "used_in_config" : {
         "File::Copy" : 1,
         "FindBin" : 1,
         "GBrowseInstall" : 1,
         "lib" : 2,
         "strict" : 1,
         "warnings" : 1
      },
      "used_in_eval_in_code" : {
         "Bio::DB::BigWig" : 1,
         "Bio::Graphics::Wiggle" : 1,
         "Class::ISA" : 1,
         "HTTP::Request::Common" : 1,
         "IO::Pipe" : 5
      },
      "used_in_eval_in_config" : {
         "Module::Build::Compat" : 2
      },
      "used_in_tests" : {
         "Bio::DB::SeqFeature::Store" : 1,
         "Bio::Graphics::FeatureFile" : 2,
         "Bio::Root::IO" : 8,
         "CGI" : 5,
         "Capture::Tiny" : 1,
         "ExtUtils::MakeMaker" : 2,
         "File::Basename" : 1,
         "File::Path" : 6,
         "File::Spec" : 2,
         "FindBin" : 10,
         "HTTP::Request::Common" : 2,
         "IO::String" : 6,
         "LWP::UserAgent" : 2,
         "Module::Build" : 7,
         "POSIX" : 1,
         "Storable" : 2,
         "TemplateCopy" : 6,
         "Test::More" : 1,
         "constant" : 15,
         "lib" : 22,
         "strict" : 9,
         "warnings" : 7
      }
   },
   "valid_signature" : -1,
   "version" : "2.51",
   "versions" : {
      "lib/Bio/DB/GFF/Aggregator/match_gap.pm" : {
         "Bio::DB::GFF::Aggregator::match_gap" : "0"
      },
      "lib/Bio/DB/GFF/Aggregator/reftranscript.pm" : {
         "Bio::DB::GFF::Aggregator::reftranscript" : "0.10"
      },
      "lib/Bio/DB/GFF/Aggregator/waba_alignment.pm" : {
         "Bio::DB::GFF::Aggregator::waba_alignment" : "0.20"
      },
      "lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm" : {
         "Bio::DB::GFF::Aggregator::wormbase_gene" : "0.30"
      },
      "lib/Bio/DB/SeqFeature/Store/Alias.pm" : {
         "Bio::DB::SeqFeature::Store::Alias" : "0",
         "Bio::DB::SeqFeature::Store::Alias::Iterator" : "0",
         "Bio::DB::SeqFeature::Store::Alias::Segment" : "0"
      },
      "lib/Bio/DB/SeqFeature/Store/BedLoader.pm" : {
         "Bio::DB::SeqFeature::Store::BedLoader" : "0"
      },
      "lib/Bio/DB/Tagger.pm" : {
         "Bio::DB::Tagger" : "1.00",
         "Bio::DB::Tagger::Iterator" : "0"
      },
      "lib/Bio/DB/Tagger/Tag.pm" : {
         "Bio::DB::Tagger::Tag" : "0"
      },
      "lib/Bio/DB/Tagger/mysql.pm" : {
         "Bio::DB::Tagger::mysql" : "0"
      },
      "lib/Bio/Graphics/Browser2.pm" : {
         "Bio::Graphics::Browser2" : "2.51"
      },
      "lib/Bio/Graphics/Browser2/Action.pm" : {
         "Bio::Graphics::Browser2::Action" : "0"
      },
      "lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm" : {
         "Bio::Graphics::Browser2::AuthorizedFeatureFile" : "0"
      },
      "lib/Bio/Graphics/Browser2/CAlign.pm" : {
         "Bio::Graphics::Browser2::CAlign" : "0"
      },
      "lib/Bio/Graphics/Browser2/CachedTrack.pm" : {
         "Bio::Graphics::Browser2::CachedTrack" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataBase.pm" : {
         "Bio::Graphics::Browser2::DataBase" : "0",
         "LRUCache" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader.pm" : {
         "Bio::Graphics::Browser2::DataLoader" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/bam.pm" : {
         "Bio::Graphics::Browser2::DataLoader::bam" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/bed.pm" : {
         "Bio::Graphics::Browser2::DataLoader::bed" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/bigwig.pm" : {
         "Bio::Graphics::Browser2::DataLoader::bigwig" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm" : {
         "Bio::Graphics::Browser2::DataLoader::featurefile" : "0",
         "MyFeatureFileLoader" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/generic.pm" : {
         "Bio::Graphics::Browser2::DataLoader::generic" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/gff.pm" : {
         "Bio::Graphics::Browser2::DataLoader::gff" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/gff3.pm" : {
         "Bio::Graphics::Browser2::DataLoader::gff3" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/sam.pm" : {
         "Bio::Graphics::Browser2::DataLoader::sam" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm" : {
         "Bio::Graphics::Browser2::DataLoader::wig2bigwig" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm" : {
         "Bio::Graphics::Browser2::DataLoader::wiggle" : "0",
         "Bio::Graphics::Wiggle::Loader::Nosample" : "0"
      },
      "lib/Bio/Graphics/Browser2/DataSource.pm" : {
         "Bio::Graphics::Browser2::DataSource" : "0"
      },
      "lib/Bio/Graphics/Browser2/ExternalData.pm" : {
         "Bio::Graphics::Browser2::ExternalData" : "0"
      },
      "lib/Bio/Graphics/Browser2/GFFhelper.pm" : {
         "Bio::Graphics::Browser2::GFFhelper" : "0",
         "FakeHomol" : "0"
      },
      "lib/Bio/Graphics/Browser2/I18n.pm" : {
         "Bio::Graphics::Browser2::I18n" : "0"
      },
      "lib/Bio/Graphics/Browser2/Markup.pm" : {
         "Bio::Graphics::Browser2::Markup" : "0"
      },
      "lib/Bio/Graphics/Browser2/OptionPick.pm" : {
         "Bio::Graphics::Browser2::OptionPick" : "0"
      },
      "lib/Bio/Graphics/Browser2/PadAlignment.pm" : {
         "Bio::Graphics::Browser2::PadAlignment" : "0"
      },
      "lib/Bio/Graphics/Browser2/Plugin.pm" : {
         "Bio::Graphics::Browser2::Plugin" : "0.30"
      },
      "lib/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm" : {
         "Bio::Graphics::Browser2::Plugin::AuthPlugin" : "0"
      },
      "lib/Bio/Graphics/Browser2/PluginSet.pm" : {
         "Bio::Graphics::Browser2::PluginSet" : "0"
      },
      "lib/Bio/Graphics/Browser2/Realign.pm" : {
         "Bio::Graphics::Browser2::Realign" : "0"
      },
      "lib/Bio/Graphics/Browser2/Region.pm" : {
         "Bio::Graphics::Browser2::Region" : "0"
      },
      "lib/Bio/Graphics/Browser2/RegionSearch.pm" : {
         "Bio::Graphics::Browser2::MetaDB" : "0",
         "Bio::Graphics::Browser2::MetaSegment" : "0",
         "Bio::Graphics::Browser2::MetaSegment::Iterator" : "0",
         "Bio::Graphics::Browser2::RegionSearch" : "0"
      },
      "lib/Bio/Graphics/Browser2/RemoteSet.pm" : {
         "Bio::Graphics::Browser2::RemoteSet" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render.pm" : {
         "Bio::Graphics::Browser2::Render" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/HTML.pm" : {
         "Bio::Graphics::Browser2::Render::HTML" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm" : {
         "Bio::Graphics::Browser2::Render::HTML::TrackListing" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm" : {
         "Bio::Graphics::Browser2::Render::HTML::TrackListing::Categories" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/Login.pm" : {
         "Bio::Graphics::Browser2::Render::Login" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/Slave.pm" : {
         "Bio::Graphics::Browser2::Render::Slave" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/Slave/Status.pm" : {
         "Bio::Graphics::Browser2::Render::Slave::Status" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/SnapshotManager.pm" : {
         "Bio::Graphics::Browser2::Render::SnapshotManager" : "0"
      },
      "lib/Bio/Graphics/Browser2/Render/TrackConfig.pm" : {
         "Bio::Graphics::Browser2::Render::TrackConfig" : "0"
      },
      "lib/Bio/Graphics/Browser2/RenderPanels.pm" : {
         "Bio::Graphics::Browser2::RenderPanels" : "0"
      },
      "lib/Bio/Graphics/Browser2/SendMail.pm" : {
         "Bio::Graphics::Browser2::SendMail" : "0"
      },
      "lib/Bio/Graphics/Browser2/Session.pm" : {
         "Bio::Graphics::Browser2::Session" : "0"
      },
      "lib/Bio/Graphics/Browser2/Shellwords.pm" : {
         "Bio::Graphics::Browser2::Shellwords" : "0"
      },
      "lib/Bio/Graphics/Browser2/SubtrackTable.pm" : {
         "Bio::Graphics::Browser2::SubtrackTable" : "0"
      },
      "lib/Bio/Graphics/Browser2/TrackDumper.pm" : {
         "Bio::Graphics::Browser2::TrackDumper" : "0"
      },
      "lib/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm" : {
         "Bio::Graphics::Browser2::TrackDumper::RichSeqMaker" : "0"
      },
      "lib/Bio/Graphics/Browser2/UserDB.pm" : {
         "Bio::Graphics::Browser2::UserDB" : "0.5"
      },
      "lib/Bio/Graphics/Browser2/UserTracks.pm" : {
         "Bio::Graphics::Browser2::AdminTracks" : "0",
         "Bio::Graphics::Browser2::UserConf" : "0",
         "Bio::Graphics::Browser2::UserTracks" : "0"
      },
      "lib/Bio/Graphics/Browser2/UserTracks/Database.pm" : {
         "Bio::Graphics::Browser2::UserTracks::Database" : "0"
      },
      "lib/Bio/Graphics/Browser2/UserTracks/Filesystem.pm" : {
         "Bio::Graphics::Browser2::UserTracks::Filesystem" : "0"
      },
      "lib/Bio/Graphics/Browser2/Util.pm" : {
         "Bio::Graphics::Browser2::Util" : "0"
      },
      "lib/Bio/Graphics/GBrowseFeature.pm" : {
         "Bio::Graphics::GBrowseFeature" : "0"
      },
      "lib/Bio/Graphics/Karyotype.pm" : {
         "Bio::Graphics::Karyotype" : "0"
      },
      "lib/CGI/Toggle.pm" : {
         "CGI::Toggle" : "0"
      },
      "lib/Legacy/DB/SyntenyBlock.pm" : {
         "Legacy::DB::SyntenyBlock" : "0"
      },
      "lib/Legacy/DB/SyntenyIO.pm" : {
         "Legacy::DB::SyntenyIO" : "0"
      },
      "lib/Legacy/Graphics/Browser.pm" : {
         "Legacy::Graphics::Browser" : "1.17",
         "Legacy::Graphics::BrowserConfig" : "0"
      },
      "lib/Legacy/Graphics/Browser/I18n.pm" : {
         "Legacy::Graphics::Browser::I18n" : "1.01"
      },
      "lib/Legacy/Graphics/Browser/PageSettings.pm" : {
         "Legacy::Graphics::Browser::PageSettings" : "0"
      },
      "lib/Legacy/Graphics/Browser/Synteny.pm" : {
         "Legacy::Graphics::Browser::Synteny" : "0.01"
      },
      "lib/Legacy/Graphics/Browser/Util.pm" : {
         "Legacy::Graphics::Browser::Util" : "0"
      }
   },
   "vname" : "GBrowse-2.51"
}