Kwalitee Issues

buildtool_not_executable

Change the permissions of Build.PL/Makefile.PL to not-executable.

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

has_manifest

Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error: Cannot find MANIFEST in dist.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: InSilicoSpectro-1.3.24/cgi/DefEnv.pm -- Around line 14: Unknown directive: =FUNCTIONS InSilicoSpectro-1.3.24/lib/InSilicoSpectro/InSilico/AASequence.pm -- Around line 64: Expected text after =item, not a bullet InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilter.pm -- Around line 115: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilterAlgorithm.pm -- Around line 48: '=item' outside of any '=over'Around line 52: You forgot a '=back' before '=head1'Around line 133: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilterCollection.pm -- Around line 67: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilterDirectValue.pm -- Around line 116: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/PhenyxPeakDescriptor.pm -- Around line 54: You forgot a '=back' before '=head1'

consistent_version

Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).

Error: 0.9,1.3.24

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: InSilicoSpectro, InSilicoSpectro::InSilico::AASequence, InSilicoSpectro::InSilico::CleavEnzyme, InSilicoSpectro::InSilico::ExpCalibrator, InSilicoSpectro::InSilico::InternIonSeries, InSilicoSpectro::InSilico::IonSeries, InSilicoSpectro::InSilico::IsoelPoint, InSilicoSpectro::InSilico::MSMSOutput, InSilicoSpectro::InSilico::MSMSTheoSpectrum, InSilicoSpectro::InSilico::MassCalculator, InSilicoSpectro::InSilico::ModRes, InSilicoSpectro::InSilico::PMFMatch, InSilicoSpectro::InSilico::Peptide, InSilicoSpectro::InSilico::RetentionTimer, InSilicoSpectro::InSilico::RetentionTimer::Hodges, InSilicoSpectro::InSilico::RetentionTimer::Petritis, InSilicoSpectro::InSilico::Sequence, InSilicoSpectro::InSilico::TermIonSeries, InSilicoSpectro::Spectra::ExpSpectrum, InSilicoSpectro::Spectra::Filter::MSFilter, InSilicoSpectro::Spectra::Filter::MSFilterAlgorithm, InSilicoSpectro::Spectra::Filter::MSFilterCollection, InSilicoSpectro::Spectra::Filter::MSFilterDirectValue, InSilicoSpectro::Spectra::MSMSCmpd, InSilicoSpectro::Spectra::MSMSSpectra, InSilicoSpectro::Spectra::MSRun, InSilicoSpectro::Spectra::MSSpectra, InSilicoSpectro::Spectra::PeakDescriptor, InSilicoSpectro::Spectra::PhenyxPeakDescriptor, InSilicoSpectro::Utils::FileCached, InSilicoSpectro::Utils::Files, InSilicoSpectro::Utils::XML::SaxIndexMaker, InSilicoSpectro::Utils::io

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

Modules

Name Abstract Version View
InSilicoSpectro Open source Perl library for proteomics 1.3.24 metacpan
InSilicoSpectro::InSilico::AASequence Elementary protein sequence. metacpan
InSilicoSpectro::InSilico::CleavEnzyme metacpan
InSilicoSpectro::InSilico::ExpCalibrator Calibrates a RetentionTimer predictor based on experimental data metacpan
InSilicoSpectro::InSilico::InternIonSeries metacpan
InSilicoSpectro::InSilico::IonSeries metacpan
InSilicoSpectro::InSilico::IsoelPoint A class for peptide isoelectric point (pI) prediction metacpan
InSilicoSpectro::InSilico::MSMSOutput metacpan
InSilicoSpectro::InSilico::MSMSTheoSpectrum metacpan
InSilicoSpectro::InSilico::MassCalculator metacpan
InSilicoSpectro::InSilico::ModRes metacpan
InSilicoSpectro::InSilico::PMFMatch metacpan
InSilicoSpectro::InSilico::Peptide A class for digestion products metacpan
InSilicoSpectro::InSilico::RetentionTimer A base class for implementing a peptide retention time predictor metacpan
InSilicoSpectro::InSilico::RetentionTimer::Hodges metacpan
InSilicoSpectro::InSilico::RetentionTimer::Petritis metacpan
InSilicoSpectro::InSilico::Sequence Elementary sequence object metacpan
InSilicoSpectro::InSilico::TermIonSeries metacpan
InSilicoSpectro::Spectra::ExpSpectrum A class for representing spectra. metacpan
InSilicoSpectro::Spectra::Filter::MSFilter 0.9 metacpan
InSilicoSpectro::Spectra::Filter::MSFilterAlgorithm 0.9 metacpan
InSilicoSpectro::Spectra::Filter::MSFilterCollection 0.9 metacpan
InSilicoSpectro::Spectra::Filter::MSFilterDirectValue 0.9 metacpan
InSilicoSpectro::Spectra::MSMSCmpd metacpan
InSilicoSpectro::Spectra::MSMSSpectra metacpan
InSilicoSpectro::Spectra::MSRun metacpan
InSilicoSpectro::Spectra::MSSpectra metacpan
InSilicoSpectro::Spectra::PeakDescriptor Description of peak properties metacpan
InSilicoSpectro::Spectra::PhenyxPeakDescriptor metacpan
InSilicoSpectro::Utils::FileCached metacpan
InSilicoSpectro::Utils::Files metacpan
InSilicoSpectro::Utils::XML::SaxIndexMaker metacpan
InSilicoSpectro::Utils::io metacpan

Other Files

Build.PL metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan