ONTO-PERL

Metadata

Analyzed metadata and errors of ONTO-PERL.

{
   "abstracts_in_pod" : {
      "Function" : "adds an OBO_ID to this set",
      "OBO::APO::APO_ID" : "A module for describing Application Ontology (APO) identifiers. Its idspace, subnamespace and localID are stored.",
      "OBO::APO::APO_ID_Set" : "An implementation of a set of OBO::APO::APO_ID objects.",
      "OBO::APO::APO_ID_Term_Map" : "A map between APO IDs and term names.",
      "OBO::APO::GoaAssociation" : "A GOA association record.",
      "OBO::APO::GoaAssociationSet" : "A GoaAssociationSet implementation",
      "OBO::APO::GoaToRDF" : "A GOA associations to RDF converter.",
      "OBO::APO::NCBIToRDF" : "A NCBI taxonomy dump to RDF converter.",
      "OBO::APO::SwissProtToRDF" : "A SwissProt to RDF converter.",
      "OBO::Parser::NCBIParser" : "A NCBI taxonomy to OBO translator.",
      "Remark" : "prior to adding new entries to the map, use method get_new_id()"
   },
   "author" : "EASR",
   "buildfile_executable" : 1,
   "dir_lib" : "lib",
   "dir_t" : "t",
   "dirs_array" : [
      "doc",
      "lib/OBO/APO",
      "lib/OBO/Core",
      "lib/OBO/Parser",
      "lib/OBO/Util",
      "lib/OBO/XO",
      "lib/OBO",
      "lib",
      "scripts",
      "t/data",
      "t",
      "t"
   ],
   "dist" : "ONTO-PERL",
   "dynamic_config" : 1,
   "error" : {
      "use_warnings" : "OBO::XO::OBO_ID_Term_Map, OBO::Core::Instance, OBO::XO::OBO_ID, OBO::APO::APO_ID, OBO::APO::APO_ID_Term_Map"
   },
   "extension" : "tar.gz",
   "external_license_file" : "LICENSE",
   "extractable" : 1,
   "extracts_nicely" : 1,
   "file__build" : 0,
   "file_blib" : 0,
   "file_build" : 0,
   "file_changelog" : "Changes",
   "file_license" : "LICENSE",
   "file_makefile" : 0,
   "file_makefile_pl" : "Makefile.PL",
   "file_manifest" : "MANIFEST",
   "file_meta_json" : "META.json",
   "file_meta_yml" : "META.yml",
   "file_pm_to_blib" : 0,
   "file_readme" : "README",
   "files_array" : [
      "Changes",
      "INSTALL",
      "LICENSE",
      "MANIFEST",
      "META.json",
      "META.yml",
      "Makefile.PL",
      "ONTO-PERL.pod",
      "README",
      "doc/example00.html",
      "doc/example01.html",
      "doc/example02.html",
      "doc/example03.html",
      "doc/example04.html",
      "doc/example05.html",
      "doc/example06.html",
      "doc/example07.html",
      "doc/example08.html",
      "doc/example09.html",
      "doc/example10.html",
      "doc/example11.html",
      "doc/example12.html",
      "doc/example13.html",
      "lib/OBO/APO/APO_ID.pm",
      "lib/OBO/APO/APO_ID_Set.pm",
      "lib/OBO/APO/APO_ID_Term_Map.pm",
      "lib/OBO/APO/GoaAssociation.pm",
      "lib/OBO/APO/GoaAssociationSet.pm",
      "lib/OBO/APO/GoaToRDF.pm",
      "lib/OBO/APO/NCBIToRDF.pm",
      "lib/OBO/APO/SwissProtToRDF.pm",
      "lib/OBO/Core/Dbxref.pm",
      "lib/OBO/Core/Def.pm",
      "lib/OBO/Core/IDspace.pm",
      "lib/OBO/Core/Instance.pm",
      "lib/OBO/Core/Ontology.pm",
      "lib/OBO/Core/Relationship.pm",
      "lib/OBO/Core/RelationshipType.pm",
      "lib/OBO/Core/SubsetDef.pm",
      "lib/OBO/Core/Synonym.pm",
      "lib/OBO/Core/SynonymTypeDef.pm",
      "lib/OBO/Core/Term.pm",
      "lib/OBO/Parser/GoaParser.pm",
      "lib/OBO/Parser/IntActParser.pm",
      "lib/OBO/Parser/NCBIParser.pm",
      "lib/OBO/Parser/OBOParser.pm",
      "lib/OBO/Parser/OWLParser.pm",
      "lib/OBO/Parser/UniProtParser.pm",
      "lib/OBO/Util/DbxrefSet.pm",
      "lib/OBO/Util/IDspaceSet.pm",
      "lib/OBO/Util/InstanceSet.pm",
      "lib/OBO/Util/Map.pm",
      "lib/OBO/Util/ObjectIdSet.pm",
      "lib/OBO/Util/ObjectSet.pm",
      "lib/OBO/Util/Ontolome.pm",
      "lib/OBO/Util/RelationshipTypeSet.pm",
      "lib/OBO/Util/Set.pm",
      "lib/OBO/Util/SubsetDefMap.pm",
      "lib/OBO/Util/SynonymSet.pm",
      "lib/OBO/Util/SynonymTypeDefSet.pm",
      "lib/OBO/Util/TermSet.pm",
      "lib/OBO/XO/OBO_ID.pm",
      "lib/OBO/XO/OBO_ID_Set.pm",
      "lib/OBO/XO/OBO_ID_Term_Map.pm",
      "scripts/bioportal_csv2obo.pl",
      "scripts/get_ancestor_terms.pl",
      "scripts/get_child_terms.pl",
      "scripts/get_descendent_terms.pl",
      "scripts/get_lowest_common_ancestor.pl",
      "scripts/get_obsolete_term_id_vs_def_in_go.pl",
      "scripts/get_obsolete_term_id_vs_name_in_go.pl",
      "scripts/get_obsolete_terms.pl",
      "scripts/get_parent_terms.pl",
      "scripts/get_relationship_id_vs_relationship_def.pl",
      "scripts/get_relationship_id_vs_relationship_name.pl",
      "scripts/get_relationship_id_vs_relationship_namespace.pl",
      "scripts/get_relationship_types.pl",
      "scripts/get_root_terms.pl",
      "scripts/get_subontology_from.pl",
      "scripts/get_term_id_vs_term_def.pl",
      "scripts/get_term_id_vs_term_name.pl",
      "scripts/get_term_id_vs_term_namespace.pl",
      "scripts/get_term_local_neighbourhood.pl",
      "scripts/get_term_synonyms.pl",
      "scripts/get_terms.pl",
      "scripts/get_terms_and_synonyms.pl",
      "scripts/get_terms_by_name.pl",
      "scripts/go2csv.pl",
      "scripts/go2owl.pl",
      "scripts/goa2rdf.pl",
      "scripts/names.xsl",
      "scripts/obo2apo.pl",
      "scripts/obo2owl.pl",
      "scripts/obo2rdf.pl",
      "scripts/obo2tran.pl",
      "scripts/obo2xml.pl",
      "scripts/obo_intersection.pl",
      "scripts/obo_transitive_reduction.pl",
      "scripts/obo_trimming.pl",
      "scripts/obo_union.pl",
      "scripts/owl2obo.pl",
      "scripts/xml2html.xsl"
   ],
   "files_hash" : {
      "Changes" : {
         "mtime" : 1445258686,
         "size" : 5895
      },
      "INSTALL" : {
         "mtime" : 1424251753,
         "size" : 2853
      },
      "LICENSE" : {
         "mtime" : 1424251754,
         "size" : 20543
      },
      "MANIFEST" : {
         "mtime" : 1424707050,
         "size" : 3712
      },
      "META.json" : {
         "mtime" : 1446220438,
         "size" : 1109
      },
      "META.yml" : {
         "mtime" : 1446220438,
         "size" : 689
      },
      "Makefile.PL" : {
         "mtime" : 1424706962,
         "size" : 5277,
         "used" : [
            "5.006",
            "ExtUtils::MakeMaker",
            "strict"
         ]
      },
      "ONTO-PERL.pod" : {
         "license" : "Perl_5",
         "mtime" : 1424251754,
         "size" : 2609
      },
      "README" : {
         "mtime" : 1424251754,
         "size" : 2268
      },
      "doc/example00.html" : {
         "mtime" : 1424251753,
         "size" : 4557
      },
      "doc/example01.html" : {
         "mtime" : 1424251753,
         "size" : 2954
      },
      "doc/example02.html" : {
         "mtime" : 1424251753,
         "size" : 1454
      },
      "doc/example03.html" : {
         "mtime" : 1424251753,
         "size" : 1449
      },
      "doc/example04.html" : {
         "mtime" : 1424251753,
         "size" : 6281
      },
      "doc/example05.html" : {
         "mtime" : 1424251753,
         "size" : 1339
      },
      "doc/example06.html" : {
         "mtime" : 1424251753,
         "size" : 816
      },
      "doc/example07.html" : {
         "mtime" : 1424251753,
         "size" : 875
      },
      "doc/example08.html" : {
         "mtime" : 1424251753,
         "size" : 3786
      },
      "doc/example09.html" : {
         "mtime" : 1424251753,
         "size" : 1312
      },
      "doc/example10.html" : {
         "mtime" : 1424251753,
         "size" : 1528
      },
      "doc/example11.html" : {
         "mtime" : 1424251753,
         "size" : 7144
      },
      "doc/example12.html" : {
         "mtime" : 1424251753,
         "size" : 25656
      },
      "doc/example13.html" : {
         "mtime" : 1424251753,
         "size" : 3308
      },
      "lib/OBO/APO/APO_ID.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::APO_ID",
         "mtime" : 1424251753,
         "size" : 4572,
         "used" : [
            "Carp",
            "OBO::XO::OBO_ID",
            "strict"
         ]
      },
      "lib/OBO/APO/APO_ID_Set.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::APO_ID_Set",
         "mtime" : 1424251753,
         "size" : 2792,
         "used" : [
            "Carp",
            "OBO::APO::APO_ID",
            "OBO::XO::OBO_ID_Set",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/APO/APO_ID_Term_Map.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::APO_ID_Term_Map",
         "mtime" : 1424251753,
         "size" : 3519,
         "used" : [
            "Carp",
            "OBO::APO::APO_ID_Set",
            "OBO::XO::OBO_ID_Term_Map",
            "open",
            "strict"
         ]
      },
      "lib/OBO/APO/GoaAssociation.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::GoaAssociation",
         "mtime" : 1424251753,
         "size" : 12448,
         "used" : [
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/APO/GoaAssociationSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::GoaAssociationSet",
         "mtime" : 1424251753,
         "size" : 7020,
         "used" : [
            "Carp",
            "OBO::Util::Set",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/APO/GoaToRDF.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::GoaToRDF",
         "mtime" : 1424251753,
         "size" : 8241,
         "used" : [
            "Carp",
            "OBO::Parser::GoaParser",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/APO/NCBIToRDF.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::NCBIToRDF",
         "mtime" : 1424251753,
         "size" : 5482,
         "used" : [
            "Carp",
            "open",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/APO/SwissProtToRDF.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::APO::SwissProtToRDF",
         "mtime" : 1424251753,
         "size" : 8088,
         "used" : [
            "Carp",
            "Data::Dumper",
            "SWISS::Entry",
            "open",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/Dbxref.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::Dbxref",
         "mtime" : 1424251753,
         "size" : 5691,
         "used" : [
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/Def.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::Def",
         "mtime" : 1424251753,
         "size" : 6940,
         "used" : [
            "Carp",
            "OBO::Util::DbxrefSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/IDspace.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::IDspace",
         "mtime" : 1424251753,
         "size" : 4944,
         "used" : [
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/Instance.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::Instance",
         "mtime" : 1424251753,
         "size" : 22876,
         "used" : [
            "Carp",
            "OBO::Core::Relationship",
            "OBO::Core::Synonym",
            "OBO::Util::SynonymSet",
            "strict"
         ]
      },
      "lib/OBO/Core/Ontology.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::Ontology",
         "mtime" : 1424958034,
         "size" : 189357,
         "used" : [
            "Carp",
            "OBO::Core::IDspace",
            "OBO::Util::IDspaceSet",
            "OBO::Util::InstanceSet",
            "OBO::Util::RelationshipTypeSet",
            "OBO::Util::SubsetDefMap",
            "OBO::Util::SynonymTypeDefSet",
            "OBO::Util::TermSet",
            "open",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/Relationship.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::Relationship",
         "mtime" : 1424251753,
         "size" : 7963,
         "used" : [
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/RelationshipType.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::RelationshipType",
         "mtime" : 1424251753,
         "size" : 30867,
         "used" : [
            "Carp",
            "OBO::Core::Def",
            "OBO::Util::Map",
            "OBO::Util::SynonymSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/SubsetDef.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::SubsetDef",
         "mtime" : 1424251753,
         "size" : 3938,
         "used" : [
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/Synonym.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::Synonym",
         "mtime" : 1424251753,
         "size" : 8668,
         "used" : [
            "Carp",
            "OBO::Core::Dbxref",
            "OBO::Core::Def",
            "OBO::Util::Set",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/SynonymTypeDef.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::SynonymTypeDef",
         "mtime" : 1424251753,
         "size" : 5209,
         "used" : [
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Core/Term.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Core::Term",
         "mtime" : 1424251753,
         "size" : 26238,
         "used" : [
            "Carp",
            "OBO::Core::Synonym",
            "OBO::Util::InstanceSet",
            "OBO::Util::SynonymSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Parser/GoaParser.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Parser::GoaParser",
         "mtime" : 1424251900,
         "size" : 8203,
         "used" : [
            "Carp",
            "OBO::APO::GoaAssociation",
            "OBO::APO::GoaAssociationSet",
            "OBO::Core::Term",
            "open",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Parser/IntActParser.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Parser::IntActParser",
         "mtime" : 1424251753,
         "size" : 8970,
         "used" : [
            "Carp",
            "OBO::Core::Term",
            "XML::XPath",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Parser/NCBIParser.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Parser::NCBIParser",
         "mtime" : 1424441858,
         "size" : 5497,
         "used" : [
            "Carp",
            "OBO::Core::Ontology",
            "OBO::Core::Term",
            "OBO::Parser::OBOParser",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Parser/OBOParser.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Parser::OBOParser",
         "mtime" : 1424335777,
         "size" : 45723,
         "used" : [
            "Carp",
            "Date::Manip",
            "OBO::Core::Dbxref",
            "OBO::Core::Instance",
            "OBO::Core::Ontology",
            "OBO::Core::Relationship",
            "OBO::Core::RelationshipType",
            "OBO::Core::SubsetDef",
            "OBO::Core::SynonymTypeDef",
            "OBO::Core::Term",
            "OBO::Util::IDspaceSet",
            "OBO::Util::Set",
            "OBO::XO::OBO_ID",
            "open",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Parser/OWLParser.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Parser::OWLParser",
         "mtime" : 1424251753,
         "size" : 27366,
         "used" : [
            "Carp",
            "OBO::Core::Dbxref",
            "OBO::Core::Ontology",
            "OBO::Core::Relationship",
            "OBO::Core::RelationshipType",
            "OBO::Core::Term",
            "constant",
            "open",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Parser/UniProtParser.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Parser::UniProtParser",
         "mtime" : 1424251753,
         "size" : 11183,
         "used" : [
            "Carp",
            "OBO::Core::Dbxref",
            "OBO::Core::Term",
            "SWISS::Entry",
            "open",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/DbxrefSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::DbxrefSet",
         "mtime" : 1424251753,
         "size" : 2989,
         "used" : [
            "OBO::Util::ObjectSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/IDspaceSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::IDspaceSet",
         "mtime" : 1424251753,
         "size" : 5730,
         "used" : [
            "OBO::Util::Set",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/InstanceSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::InstanceSet",
         "mtime" : 1424251753,
         "size" : 3089,
         "used" : [
            "OBO::Util::ObjectSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/Map.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::Map",
         "mtime" : 1424251753,
         "size" : 9347,
         "used" : [
            "Carp",
            "OBO::Util::Set",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/ObjectIdSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::ObjectIdSet",
         "mtime" : 1424251753,
         "size" : 6268,
         "used" : [
            "Carp",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/ObjectSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::ObjectSet",
         "mtime" : 1424251753,
         "size" : 3777,
         "used" : [
            "OBO::Util::ObjectIdSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/Ontolome.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::Ontolome",
         "mtime" : 1424251754,
         "size" : 40204,
         "used" : [
            "OBO::Util::ObjectSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/RelationshipTypeSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::RelationshipTypeSet",
         "mtime" : 1424251754,
         "size" : 3193,
         "used" : [
            "OBO::Util::ObjectSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/Set.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::Set",
         "mtime" : 1424251754,
         "size" : 6087,
         "used" : [
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/SubsetDefMap.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::SubsetDefMap",
         "mtime" : 1424251754,
         "size" : 2850,
         "used" : [
            "Carp",
            "OBO::Util::Map",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/SynonymSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::SynonymSet",
         "mtime" : 1424251754,
         "size" : 4124,
         "used" : [
            "OBO::Util::Set",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/SynonymTypeDefSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::SynonymTypeDefSet",
         "mtime" : 1424251754,
         "size" : 4238,
         "used" : [
            "OBO::Util::Set",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/Util/TermSet.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::Util::TermSet",
         "mtime" : 1424251754,
         "size" : 2949,
         "used" : [
            "OBO::Util::ObjectSet",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/XO/OBO_ID.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::XO::OBO_ID",
         "mtime" : 1424251754,
         "size" : 4343,
         "used" : [
            "strict"
         ]
      },
      "lib/OBO/XO/OBO_ID_Set.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::XO::OBO_ID_Set",
         "mtime" : 1424251754,
         "size" : 2975,
         "used" : [
            "Carp",
            "OBO::Util::ObjectSet",
            "OBO::XO::OBO_ID",
            "strict",
            "warnings"
         ]
      },
      "lib/OBO/XO/OBO_ID_Term_Map.pm" : {
         "license" : "Perl_5",
         "module" : "OBO::XO::OBO_ID_Term_Map",
         "mtime" : 1424251754,
         "size" : 10225,
         "used" : [
            "Carp",
            "OBO::XO::OBO_ID_Set",
            "open",
            "strict"
         ]
      },
      "scripts/bioportal_csv2obo.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444979089,
         "size" : 7800
      },
      "scripts/get_ancestor_terms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444917304,
         "size" : 2217
      },
      "scripts/get_child_terms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444917512,
         "size" : 2228
      },
      "scripts/get_descendent_terms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444917677,
         "size" : 2241
      },
      "scripts/get_lowest_common_ancestor.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445003400,
         "size" : 3104
      },
      "scripts/get_obsolete_term_id_vs_def_in_go.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444917979,
         "size" : 2160
      },
      "scripts/get_obsolete_term_id_vs_name_in_go.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444917988,
         "size" : 2063
      },
      "scripts/get_obsolete_terms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444918120,
         "size" : 2105
      },
      "scripts/get_parent_terms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444918188,
         "size" : 2237
      },
      "scripts/get_relationship_id_vs_relationship_def.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444978525,
         "size" : 2558
      },
      "scripts/get_relationship_id_vs_relationship_name.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444978635,
         "size" : 2537
      },
      "scripts/get_relationship_id_vs_relationship_namespace.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444978696,
         "size" : 2644
      },
      "scripts/get_relationship_types.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444978763,
         "size" : 1983
      },
      "scripts/get_root_terms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444978887,
         "size" : 2004
      },
      "scripts/get_subontology_from.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444980887,
         "size" : 2873
      },
      "scripts/get_term_id_vs_term_def.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444980963,
         "size" : 2256
      },
      "scripts/get_term_id_vs_term_name.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444981055,
         "size" : 2238
      },
      "scripts/get_term_id_vs_term_namespace.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444981347,
         "size" : 2341
      },
      "scripts/get_term_local_neighbourhood.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444992847,
         "size" : 2730
      },
      "scripts/get_term_synonyms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444993044,
         "size" : 2226
      },
      "scripts/get_terms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444981499,
         "size" : 2138
      },
      "scripts/get_terms_and_synonyms.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444981535,
         "size" : 2892
      },
      "scripts/get_terms_by_name.pl" : {
         "license" : "Perl_5",
         "mtime" : 1444992546,
         "size" : 2355
      },
      "scripts/go2csv.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445005650,
         "size" : 6407
      },
      "scripts/go2owl.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445005646,
         "size" : 1754
      },
      "scripts/goa2rdf.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445005788,
         "size" : 2231
      },
      "scripts/names.xsl" : {
         "mtime" : 1424251754,
         "size" : 883
      },
      "scripts/obo2apo.pl" : {
         "license" : "Perl_5",
         "mtime" : 1424251754,
         "size" : 3593
      },
      "scripts/obo2owl.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445005961,
         "size" : 2057
      },
      "scripts/obo2rdf.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445006130,
         "size" : 2127
      },
      "scripts/obo2tran.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445006219,
         "size" : 2242
      },
      "scripts/obo2xml.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445261091,
         "size" : 1778
      },
      "scripts/obo_intersection.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445003869,
         "size" : 2884
      },
      "scripts/obo_transitive_reduction.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445261163,
         "size" : 2414
      },
      "scripts/obo_trimming.pl" : {
         "license" : "Perl_5",
         "mtime" : 1424251754,
         "size" : 1948
      },
      "scripts/obo_union.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445005256,
         "size" : 2402
      },
      "scripts/owl2obo.pl" : {
         "license" : "Perl_5",
         "mtime" : 1445261248,
         "size" : 1925
      },
      "scripts/xml2html.xsl" : {
         "mtime" : 1424251754,
         "size" : 3128
      },
      "t/APO_ID.t" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 751,
         "used" : [
            "OBO::APO::APO_ID",
            "Test",
            "strict"
         ]
      },
      "t/APO_ID_Set.t" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2111,
         "used" : [
            "OBO::APO::APO_ID",
            "OBO::APO::APO_ID_Set",
            "Test",
            "strict"
         ]
      },
      "t/APO_ID_Term_Map.t" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1849,
         "used" : [
            "Data::Dumper",
            "OBO::APO::APO_ID_Term_Map",
            "Test",
            "strict"
         ]
      },
      "t/Dbxref.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1921,
         "used" : [
            "OBO::Core::Dbxref",
            "Test",
            "strict"
         ]
      },
      "t/DbxrefSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2262,
         "used" : [
            "OBO::Core::Dbxref",
            "OBO::Util::DbxrefSet",
            "Test",
            "strict"
         ]
      },
      "t/Def.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 3902,
         "used" : [
            "OBO::Core::Dbxref",
            "OBO::Core::Def",
            "Test",
            "strict"
         ]
      },
      "t/GoaAssociation.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2755,
         "used" : [
            "OBO::APO::GoaAssociation",
            "Test",
            "strict"
         ]
      },
      "t/GoaAssociationSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 6065,
         "used" : [
            "OBO::APO::GoaAssociation",
            "OBO::APO::GoaAssociationSet",
            "OBO::Util::Set",
            "Test",
            "strict"
         ]
      },
      "t/GoaParser.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 2262,
         "used" : [
            "Carp",
            "IO::File",
            "OBO::Parser::GoaParser",
            "OBO::Parser::OBOParser",
            "Test::More",
            "strict",
            "warnings"
         ]
      },
      "t/GoaToRDF.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 673,
         "used" : [
            "Carp",
            "OBO::APO::GoaToRDF",
            "Test",
            "strict",
            "warnings"
         ]
      },
      "t/IDspace.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1403,
         "used" : [
            "OBO::Core::IDspace",
            "Test",
            "strict"
         ]
      },
      "t/IDspaceSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 3092,
         "used" : [
            "OBO::Core::IDspace",
            "OBO::Util::IDspaceSet",
            "Test"
         ]
      },
      "t/Instance.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 8195,
         "used" : [
            "OBO::Core::Dbxref",
            "OBO::Core::Def",
            "OBO::Core::Instance",
            "OBO::Core::Relationship",
            "OBO::Core::Synonym",
            "OBO::Core::Term",
            "OBO::Util::DbxrefSet",
            "Test",
            "strict"
         ]
      },
      "t/InstanceSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2813,
         "used" : [
            "OBO::Core::Instance",
            "OBO::Util::InstanceSet",
            "Test"
         ]
      },
      "t/IntActParser.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required" : [
            "OBO::Parser::IntActParser"
         ],
         "required_in_eval" : [
            "XML::XPath"
         ],
         "size" : 2520,
         "used" : [
            "Carp",
            "IO::File",
            "OBO::Parser::OBOParser",
            "Test::More",
            "strict",
            "warnings"
         ]
      },
      "t/Map.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2559,
         "used" : [
            "OBO::Util::Map",
            "Test",
            "strict"
         ]
      },
      "t/NCBIParser.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 1431,
         "used" : [
            "Carp",
            "IO::File",
            "OBO::Parser::NCBIParser",
            "OBO::Parser::OBOParser",
            "Test::More",
            "strict",
            "warnings"
         ]
      },
      "t/NCBIToRDF.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 800,
         "used" : [
            "Carp",
            "OBO::APO::NCBIToRDF",
            "Test",
            "strict",
            "warnings"
         ]
      },
      "t/OBOParser.t" : {
         "mtime" : 1424343362,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 9352,
         "used" : [
            "OBO::Parser::OBOParser",
            "Test",
            "strict"
         ]
      },
      "t/OBO_ID.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 996,
         "used" : [
            "OBO::XO::OBO_ID",
            "Test",
            "strict"
         ]
      },
      "t/OBO_ID_Set.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1934,
         "used" : [
            "OBO::XO::OBO_ID",
            "OBO::XO::OBO_ID_Set",
            "Test",
            "strict"
         ]
      },
      "t/OBO_ID_Term_Map.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2422,
         "used" : [
            "Data::Dumper",
            "OBO::XO::OBO_ID_Term_Map",
            "Test",
            "strict"
         ]
      },
      "t/OWLParser.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required" : [
            "OBO::Parser::OWLParser"
         ],
         "size" : 920,
         "used" : [
            "Carp",
            "Test::More",
            "strict",
            "warnings"
         ],
         "used_in_eval" : [
            "XML::Parser"
         ]
      },
      "t/Ontology.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 40884,
         "used" : [
            "OBO::Core::Instance",
            "OBO::Core::Ontology",
            "OBO::Core::Relationship",
            "OBO::Core::RelationshipType",
            "OBO::Core::SynonymTypeDef",
            "OBO::Core::Term",
            "OBO::Parser::OBOParser",
            "OBO::Util::TermSet",
            "Test"
         ]
      },
      "t/Ontolome.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 25872,
         "used" : [
            "OBO::Core::Ontology",
            "OBO::Core::Relationship",
            "OBO::Core::RelationshipType",
            "OBO::Core::Term",
            "OBO::Parser::OBOParser",
            "OBO::Util::Ontolome",
            "Test",
            "strict"
         ]
      },
      "t/Relationship.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1908,
         "used" : [
            "OBO::Core::Relationship",
            "OBO::Core::Term",
            "Test",
            "strict"
         ]
      },
      "t/RelationshipType.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 8481,
         "used" : [
            "OBO::Core::RelationshipType",
            "OBO::Core::Synonym",
            "Test",
            "strict"
         ]
      },
      "t/RelationshipTypeSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2801,
         "used" : [
            "OBO::Core::RelationshipType",
            "OBO::Util::RelationshipTypeSet",
            "Test"
         ]
      },
      "t/Set.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1584,
         "used" : [
            "OBO::Util::Set",
            "Test",
            "strict"
         ]
      },
      "t/SubsetDef.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 930,
         "used" : [
            "OBO::Core::SubsetDef",
            "Test",
            "strict"
         ]
      },
      "t/SubsetDefMap.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 3691,
         "used" : [
            "OBO::Core::SubsetDef",
            "OBO::Util::SubsetDefMap",
            "Test",
            "strict"
         ]
      },
      "t/SwissProtToRDF.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required" : [
            "OBO::APO::SwissProtToRDF"
         ],
         "required_in_eval" : [
            "SWISS::Entry"
         ],
         "size" : 787,
         "used" : [
            "Carp",
            "Test::More",
            "strict",
            "warnings"
         ]
      },
      "t/Synonym.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 3686,
         "used" : [
            "OBO::Core::Dbxref",
            "OBO::Core::Synonym",
            "Test"
         ]
      },
      "t/SynonymSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 4805,
         "used" : [
            "OBO::Core::Synonym",
            "OBO::Util::SynonymSet",
            "Test"
         ]
      },
      "t/SynonymTypeDef.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 1029,
         "used" : [
            "OBO::Core::SynonymTypeDef",
            "Test",
            "strict"
         ]
      },
      "t/SynonymTypeDefSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 3044,
         "used" : [
            "OBO::Core::SynonymTypeDef",
            "OBO::Util::SynonymTypeDefSet",
            "Test"
         ]
      },
      "t/Term.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 11172,
         "used" : [
            "OBO::Core::Dbxref",
            "OBO::Core::Def",
            "OBO::Core::Instance",
            "OBO::Core::Synonym",
            "OBO::Core::Term",
            "OBO::Util::DbxrefSet",
            "POSIX",
            "Test",
            "strict"
         ]
      },
      "t/TermSet.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required_in_eval" : [
            "Test"
         ],
         "size" : 2653,
         "used" : [
            "OBO::Core::Term",
            "OBO::Util::TermSet",
            "Test"
         ]
      },
      "t/UniProtParser.t" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "required" : [
            "OBO::Parser::UniProtParser"
         ],
         "size" : 3001,
         "used" : [
            "Carp",
            "IO::File",
            "OBO::Parser::OBOParser",
            "OBO::XO::OBO_ID_Term_Map",
            "Test::More",
            "strict",
            "warnings"
         ],
         "used_in_eval" : [
            "SWISS::Entry"
         ]
      },
      "t/data/all.goa" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "size" : 1324
      },
      "t/data/alpha.obo" : {
         "mtime" : 1424342393,
         "no_index" : 1,
         "size" : 7173
      },
      "t/data/apo_id_term.map" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "size" : 318
      },
      "t/data/cell.obo" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "size" : 205374
      },
      "t/data/fake_ulo_apo.obo" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "size" : 3043
      },
      "t/data/go.map" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "size" : 80
      },
      "t/data/goa_assoc_filt.txt" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "size" : 840
      },
      "t/data/header.obo" : {
         "mtime" : 1424342957,
         "no_index" : 1,
         "size" : 3619
      },
      "t/data/human.0.obo" : {
         "mtime" : 1424251754,
         "no_index" : 1,
         "size" : 1925958
      },
      "t/data/human.1.map" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 519568
      },
      "t/data/human.map" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 1902
      },
      "t/data/human_small-41.xml" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 77293
      },
      "t/data/my_parser_test.obo" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 11959
      },
      "t/data/names_dummy.dmp" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 943
      },
      "t/data/nodes_dummy.dmp" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 507
      },
      "t/data/obo_id_term.map" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 302
      },
      "t/data/out_I_A_thaliana.obo" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 198253
      },
      "t/data/pre_apo.obo" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 214688
      },
      "t/data/test_ulo_apo2.owl" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 16910
      },
      "t/data/ulo_apo.obo" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 3166
      },
      "t/data/up.dat" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 7991
      },
      "t/data/up.map" : {
         "mtime" : 1424251755,
         "no_index" : 1,
         "size" : 52
      }
   },
   "got_prereq_from" : "META.yml",
   "kwalitee" : {
      "buildtool_not_executable" : 0,
      "consistent_version" : 1,
      "distname_matches_name_in_meta" : 1,
      "extractable" : 1,
      "extracts_nicely" : 1,
      "has_abstract_in_pod" : 1,
      "has_buildtool" : 1,
      "has_changelog" : 1,
      "has_human_readable_license" : 1,
      "has_known_license_in_source_file" : 1,
      "has_license_in_source_file" : 1,
      "has_manifest" : 1,
      "has_meta_yml" : 1,
      "has_proper_version" : 1,
      "has_readme" : 1,
      "has_separate_license_file" : 1,
      "has_tests" : 1,
      "has_tests_in_t_dir" : 1,
      "has_version" : 1,
      "kwalitee" : "95.45",
      "manifest_matches_dist" : 1,
      "meta_json_conforms_to_known_spec" : 1,
      "meta_json_is_parsable" : 1,
      "meta_yml_conforms_to_known_spec" : 1,
      "meta_yml_declares_perl_version" : 1,
      "meta_yml_has_license" : 1,
      "meta_yml_has_provides" : 0,
      "meta_yml_has_repository_resource" : 0,
      "meta_yml_is_parsable" : 1,
      "no_abstract_stub_in_pod" : 1,
      "no_broken_auto_install" : 1,
      "no_broken_module_install" : 1,
      "no_dot_dirs" : 1,
      "no_dot_underscore_files" : 1,
      "no_generated_files" : 1,
      "no_invalid_versions" : 1,
      "no_local_dirs" : 1,
      "no_mymeta_files" : 1,
      "no_pax_headers" : 1,
      "no_pod_errors" : 1,
      "no_stdin_for_prompting" : 1,
      "no_symlinks" : 1,
      "package_version_matches_dist_version" : 1,
      "portable_filenames" : 1,
      "proper_libs" : 1,
      "use_strict" : 1,
      "use_warnings" : 0,
      "valid_signature" : 1
   },
   "latest_mtime" : 1446220438,
   "license" : "perl defined in META.yml defined in LICENSE",
   "license_file" : "ONTO-PERL.pod,lib/OBO/APO/APO_ID.pm,lib/OBO/APO/APO_ID_Set.pm,lib/OBO/APO/APO_ID_Term_Map.pm,lib/OBO/APO/GoaAssociation.pm,lib/OBO/APO/GoaAssociationSet.pm,lib/OBO/APO/GoaToRDF.pm,lib/OBO/APO/NCBIToRDF.pm,lib/OBO/APO/SwissProtToRDF.pm,lib/OBO/Core/Dbxref.pm,lib/OBO/Core/Def.pm,lib/OBO/Core/IDspace.pm,lib/OBO/Core/Instance.pm,lib/OBO/Core/Ontology.pm,lib/OBO/Core/Relationship.pm,lib/OBO/Core/RelationshipType.pm,lib/OBO/Core/SubsetDef.pm,lib/OBO/Core/Synonym.pm,lib/OBO/Core/SynonymTypeDef.pm,lib/OBO/Core/Term.pm,lib/OBO/Parser/GoaParser.pm,lib/OBO/Parser/IntActParser.pm,lib/OBO/Parser/NCBIParser.pm,lib/OBO/Parser/OBOParser.pm,lib/OBO/Parser/OWLParser.pm,lib/OBO/Parser/UniProtParser.pm,lib/OBO/Util/DbxrefSet.pm,lib/OBO/Util/IDspaceSet.pm,lib/OBO/Util/InstanceSet.pm,lib/OBO/Util/Map.pm,lib/OBO/Util/ObjectIdSet.pm,lib/OBO/Util/ObjectSet.pm,lib/OBO/Util/Ontolome.pm,lib/OBO/Util/RelationshipTypeSet.pm,lib/OBO/Util/Set.pm,lib/OBO/Util/SubsetDefMap.pm,lib/OBO/Util/SynonymSet.pm,lib/OBO/Util/SynonymTypeDefSet.pm,lib/OBO/Util/TermSet.pm,lib/OBO/XO/OBO_ID.pm,lib/OBO/XO/OBO_ID_Set.pm,lib/OBO/XO/OBO_ID_Term_Map.pm,scripts/bioportal_csv2obo.pl,scripts/get_ancestor_terms.pl,scripts/get_child_terms.pl,scripts/get_descendent_terms.pl,scripts/get_lowest_common_ancestor.pl,scripts/get_obsolete_term_id_vs_def_in_go.pl,scripts/get_obsolete_term_id_vs_name_in_go.pl,scripts/get_obsolete_terms.pl,scripts/get_parent_terms.pl,scripts/get_relationship_id_vs_relationship_def.pl,scripts/get_relationship_id_vs_relationship_name.pl,scripts/get_relationship_id_vs_relationship_namespace.pl,scripts/get_relationship_types.pl,scripts/get_root_terms.pl,scripts/get_subontology_from.pl,scripts/get_term_id_vs_term_def.pl,scripts/get_term_id_vs_term_name.pl,scripts/get_term_id_vs_term_namespace.pl,scripts/get_term_local_neighbourhood.pl,scripts/get_term_synonyms.pl,scripts/get_terms.pl,scripts/get_terms_and_synonyms.pl,scripts/get_terms_by_name.pl,scripts/go2csv.pl,scripts/go2owl.pl,scripts/goa2rdf.pl,scripts/obo2apo.pl,scripts/obo2owl.pl,scripts/obo2rdf.pl,scripts/obo2tran.pl,scripts/obo2xml.pl,scripts/obo_intersection.pl,scripts/obo_transitive_reduction.pl,scripts/obo_trimming.pl,scripts/obo_union.pl,scripts/owl2obo.pl",
   "license_from_yaml" : "perl",
   "license_in_pod" : 1,
   "license_type" : "Perl_5",
   "licenses" : {
      "Perl_5" : [
         "ONTO-PERL.pod",
         "lib/OBO/APO/APO_ID.pm",
         "lib/OBO/APO/APO_ID_Set.pm",
         "lib/OBO/APO/APO_ID_Term_Map.pm",
         "lib/OBO/APO/GoaAssociation.pm",
         "lib/OBO/APO/GoaAssociationSet.pm",
         "lib/OBO/APO/GoaToRDF.pm",
         "lib/OBO/APO/NCBIToRDF.pm",
         "lib/OBO/APO/SwissProtToRDF.pm",
         "lib/OBO/Core/Dbxref.pm",
         "lib/OBO/Core/Def.pm",
         "lib/OBO/Core/IDspace.pm",
         "lib/OBO/Core/Instance.pm",
         "lib/OBO/Core/Ontology.pm",
         "lib/OBO/Core/Relationship.pm",
         "lib/OBO/Core/RelationshipType.pm",
         "lib/OBO/Core/SubsetDef.pm",
         "lib/OBO/Core/Synonym.pm",
         "lib/OBO/Core/SynonymTypeDef.pm",
         "lib/OBO/Core/Term.pm",
         "lib/OBO/Parser/GoaParser.pm",
         "lib/OBO/Parser/IntActParser.pm",
         "lib/OBO/Parser/NCBIParser.pm",
         "lib/OBO/Parser/OBOParser.pm",
         "lib/OBO/Parser/OWLParser.pm",
         "lib/OBO/Parser/UniProtParser.pm",
         "lib/OBO/Util/DbxrefSet.pm",
         "lib/OBO/Util/IDspaceSet.pm",
         "lib/OBO/Util/InstanceSet.pm",
         "lib/OBO/Util/Map.pm",
         "lib/OBO/Util/ObjectIdSet.pm",
         "lib/OBO/Util/ObjectSet.pm",
         "lib/OBO/Util/Ontolome.pm",
         "lib/OBO/Util/RelationshipTypeSet.pm",
         "lib/OBO/Util/Set.pm",
         "lib/OBO/Util/SubsetDefMap.pm",
         "lib/OBO/Util/SynonymSet.pm",
         "lib/OBO/Util/SynonymTypeDefSet.pm",
         "lib/OBO/Util/TermSet.pm",
         "lib/OBO/XO/OBO_ID.pm",
         "lib/OBO/XO/OBO_ID_Set.pm",
         "lib/OBO/XO/OBO_ID_Term_Map.pm",
         "scripts/bioportal_csv2obo.pl",
         "scripts/get_ancestor_terms.pl",
         "scripts/get_child_terms.pl",
         "scripts/get_descendent_terms.pl",
         "scripts/get_lowest_common_ancestor.pl",
         "scripts/get_obsolete_term_id_vs_def_in_go.pl",
         "scripts/get_obsolete_term_id_vs_name_in_go.pl",
         "scripts/get_obsolete_terms.pl",
         "scripts/get_parent_terms.pl",
         "scripts/get_relationship_id_vs_relationship_def.pl",
         "scripts/get_relationship_id_vs_relationship_name.pl",
         "scripts/get_relationship_id_vs_relationship_namespace.pl",
         "scripts/get_relationship_types.pl",
         "scripts/get_root_terms.pl",
         "scripts/get_subontology_from.pl",
         "scripts/get_term_id_vs_term_def.pl",
         "scripts/get_term_id_vs_term_name.pl",
         "scripts/get_term_id_vs_term_namespace.pl",
         "scripts/get_term_local_neighbourhood.pl",
         "scripts/get_term_synonyms.pl",
         "scripts/get_terms.pl",
         "scripts/get_terms_and_synonyms.pl",
         "scripts/get_terms_by_name.pl",
         "scripts/go2csv.pl",
         "scripts/go2owl.pl",
         "scripts/goa2rdf.pl",
         "scripts/obo2apo.pl",
         "scripts/obo2owl.pl",
         "scripts/obo2rdf.pl",
         "scripts/obo2tran.pl",
         "scripts/obo2xml.pl",
         "scripts/obo_intersection.pl",
         "scripts/obo_transitive_reduction.pl",
         "scripts/obo_trimming.pl",
         "scripts/obo_union.pl",
         "scripts/owl2obo.pl"
      ]
   },
   "manifest_matches_dist" : 1,
   "meta_json_is_parsable" : 1,
   "meta_json_spec_version" : "2",
   "meta_yml" : {
      "abstract" : "PERL modules for manipulating OBO-formatted ontologies, such as the Gene Ontology (GO)",
      "author" : [
         "Erick Antezana <erick.antezana -@- gmail.com>, Vladimir Mironov <vladimir.n.mironov -@- gmail.com>"
      ],
      "build_requires" : {
         "Date::Manip" : "6.42",
         "ExtUtils::MakeMaker" : "6.84"
      },
      "configure_requires" : {
         "Date::Manip" : "6.42",
         "ExtUtils::MakeMaker" : "6.84"
      },
      "dynamic_config" : "1",
      "generated_by" : "ExtUtils::MakeMaker version 7.04, CPAN::Meta::Converter version 2.150001",
      "license" : "perl",
      "meta-spec" : {
         "url" : "http://module-build.sourceforge.net/META-spec-v1.4.html",
         "version" : "1.4"
      },
      "name" : "ONTO-PERL",
      "no_index" : {
         "directory" : [
            "t",
            "inc"
         ]
      },
      "requires" : {
         "Date::Manip" : "6.42",
         "perl" : "5.005"
      },
      "version" : "1.45"
   },
   "meta_yml_is_parsable" : 1,
   "meta_yml_spec_version" : "1.4",
   "modules" : [
      {
         "file" : "lib/OBO/APO/APO_ID.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::APO_ID"
      },
      {
         "file" : "lib/OBO/APO/APO_ID_Set.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::APO_ID_Set"
      },
      {
         "file" : "lib/OBO/APO/APO_ID_Term_Map.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::APO_ID_Term_Map"
      },
      {
         "file" : "lib/OBO/APO/GoaAssociation.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::GoaAssociation"
      },
      {
         "file" : "lib/OBO/APO/GoaAssociationSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::GoaAssociationSet"
      },
      {
         "file" : "lib/OBO/APO/GoaToRDF.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::GoaToRDF"
      },
      {
         "file" : "lib/OBO/APO/NCBIToRDF.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::NCBIToRDF"
      },
      {
         "file" : "lib/OBO/APO/SwissProtToRDF.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::APO::SwissProtToRDF"
      },
      {
         "file" : "lib/OBO/Core/Dbxref.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::Dbxref"
      },
      {
         "file" : "lib/OBO/Core/Def.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::Def"
      },
      {
         "file" : "lib/OBO/Core/IDspace.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::IDspace"
      },
      {
         "file" : "lib/OBO/Core/Instance.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::Instance"
      },
      {
         "file" : "lib/OBO/Core/Ontology.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::Ontology"
      },
      {
         "file" : "lib/OBO/Core/Relationship.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::Relationship"
      },
      {
         "file" : "lib/OBO/Core/RelationshipType.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::RelationshipType"
      },
      {
         "file" : "lib/OBO/Core/SubsetDef.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::SubsetDef"
      },
      {
         "file" : "lib/OBO/Core/Synonym.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::Synonym"
      },
      {
         "file" : "lib/OBO/Core/SynonymTypeDef.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::SynonymTypeDef"
      },
      {
         "file" : "lib/OBO/Core/Term.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Core::Term"
      },
      {
         "file" : "lib/OBO/Parser/GoaParser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Parser::GoaParser"
      },
      {
         "file" : "lib/OBO/Parser/IntActParser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Parser::IntActParser"
      },
      {
         "file" : "lib/OBO/Parser/NCBIParser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Parser::NCBIParser"
      },
      {
         "file" : "lib/OBO/Parser/OBOParser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Parser::OBOParser"
      },
      {
         "file" : "lib/OBO/Parser/OWLParser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Parser::OWLParser"
      },
      {
         "file" : "lib/OBO/Parser/UniProtParser.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Parser::UniProtParser"
      },
      {
         "file" : "lib/OBO/Util/DbxrefSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::DbxrefSet"
      },
      {
         "file" : "lib/OBO/Util/IDspaceSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::IDspaceSet"
      },
      {
         "file" : "lib/OBO/Util/InstanceSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::InstanceSet"
      },
      {
         "file" : "lib/OBO/Util/Map.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::Map"
      },
      {
         "file" : "lib/OBO/Util/ObjectIdSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::ObjectIdSet"
      },
      {
         "file" : "lib/OBO/Util/ObjectSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::ObjectSet"
      },
      {
         "file" : "lib/OBO/Util/Ontolome.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::Ontolome"
      },
      {
         "file" : "lib/OBO/Util/RelationshipTypeSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::RelationshipTypeSet"
      },
      {
         "file" : "lib/OBO/Util/Set.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::Set"
      },
      {
         "file" : "lib/OBO/Util/SubsetDefMap.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::SubsetDefMap"
      },
      {
         "file" : "lib/OBO/Util/SynonymSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::SynonymSet"
      },
      {
         "file" : "lib/OBO/Util/SynonymTypeDefSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::SynonymTypeDefSet"
      },
      {
         "file" : "lib/OBO/Util/TermSet.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::Util::TermSet"
      },
      {
         "file" : "lib/OBO/XO/OBO_ID.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::XO::OBO_ID"
      },
      {
         "file" : "lib/OBO/XO/OBO_ID_Set.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::XO::OBO_ID_Set"
      },
      {
         "file" : "lib/OBO/XO/OBO_ID_Term_Map.pm",
         "in_basedir" : 0,
         "in_lib" : 1,
         "module" : "OBO::XO::OBO_ID_Term_Map"
      }
   ],
   "no_index" : "^inc/;^t/",
   "no_pax_headers" : 1,
   "package" : "ONTO-PERL/ONTO-PERL-1.45.tar.gz",
   "prereq" : [
      {
         "is_prereq" : 1,
         "requires" : "Date::Manip",
         "type" : "runtime_requires",
         "version" : "6.42"
      },
      {
         "is_build_prereq" : 1,
         "requires" : "Date::Manip",
         "type" : "build_requires",
         "version" : "6.42"
      },
      {
         "requires" : "Date::Manip",
         "type" : "configure_requires",
         "version" : "6.42"
      },
      {
         "is_prereq" : 1,
         "requires" : "perl",
         "type" : "runtime_requires",
         "version" : "5.005"
      },
      {
         "is_build_prereq" : 1,
         "requires" : "ExtUtils::MakeMaker",
         "type" : "build_requires",
         "version" : "6.84"
      },
      {
         "requires" : "ExtUtils::MakeMaker",
         "type" : "configure_requires",
         "version" : "6.84"
      }
   ],
   "released_epoch" : 1446221066,
   "size_packed" : 731993,
   "size_unpacked" : 4169879,
   "uses" : {
      "required_in_eval_in_tests" : {
         "SWISS::Entry" : 1,
         "Test" : 33,
         "XML::XPath" : 1
      },
      "used_in_code" : {
         "Carp" : 30,
         "Data::Dumper" : 1,
         "Date::Manip" : 1,
         "SWISS::Entry" : 2,
         "XML::XPath" : 1,
         "constant" : 52,
         "open" : 9,
         "strict" : 41,
         "warnings" : 36
      },
      "used_in_config" : {
         "5.006" : 1,
         "ExtUtils::MakeMaker" : 1,
         "strict" : 1
      },
      "used_in_eval_in_tests" : {
         "SWISS::Entry" : 1,
         "XML::Parser" : 1
      },
      "used_in_tests" : {
         "Carp" : 8,
         "Data::Dumper" : 2,
         "IO::File" : 4,
         "POSIX" : 1,
         "Test" : 33,
         "Test::More" : 6,
         "strict" : 31,
         "warnings" : 8
      }
   },
   "valid_signature" : -1,
   "version" : "1.45",
   "versions" : {
      "lib/OBO/APO/APO_ID.pm" : {
         "OBO::APO::APO_ID" : "undef"
      },
      "lib/OBO/APO/APO_ID_Set.pm" : {
         "OBO::APO::APO_ID_Set" : "undef"
      },
      "lib/OBO/APO/APO_ID_Term_Map.pm" : {
         "OBO::APO::APO_ID_Term_Map" : "undef"
      },
      "lib/OBO/APO/GoaAssociation.pm" : {
         "OBO::APO::GoaAssociation" : "undef"
      },
      "lib/OBO/APO/GoaAssociationSet.pm" : {
         "OBO::APO::GoaAssociationSet" : "undef"
      },
      "lib/OBO/APO/GoaToRDF.pm" : {
         "OBO::APO::GoaToRDF" : "undef"
      },
      "lib/OBO/APO/NCBIToRDF.pm" : {
         "OBO::APO::NCBIToRDF" : "undef"
      },
      "lib/OBO/APO/SwissProtToRDF.pm" : {
         "OBO::APO::SwissProtToRDF" : "undef"
      },
      "lib/OBO/Core/Dbxref.pm" : {
         "OBO::Core::Dbxref" : "undef"
      },
      "lib/OBO/Core/Def.pm" : {
         "OBO::Core::Def" : "undef"
      },
      "lib/OBO/Core/IDspace.pm" : {
         "OBO::Core::IDspace" : "undef"
      },
      "lib/OBO/Core/Instance.pm" : {
         "OBO::Core::Instance" : "undef"
      },
      "lib/OBO/Core/Ontology.pm" : {
         "OBO::Core::Ontology" : "1.45"
      },
      "lib/OBO/Core/Relationship.pm" : {
         "OBO::Core::Relationship" : "undef"
      },
      "lib/OBO/Core/RelationshipType.pm" : {
         "OBO::Core::RelationshipType" : "undef"
      },
      "lib/OBO/Core/SubsetDef.pm" : {
         "OBO::Core::SubsetDef" : "undef"
      },
      "lib/OBO/Core/Synonym.pm" : {
         "OBO::Core::Synonym" : "undef"
      },
      "lib/OBO/Core/SynonymTypeDef.pm" : {
         "OBO::Core::SynonymTypeDef" : "undef"
      },
      "lib/OBO/Core/Term.pm" : {
         "OBO::Core::Term" : "undef"
      },
      "lib/OBO/Parser/GoaParser.pm" : {
         "OBO::Parser::GoaParser" : "undef"
      },
      "lib/OBO/Parser/IntActParser.pm" : {
         "OBO::Parser::IntActParser" : "undef"
      },
      "lib/OBO/Parser/NCBIParser.pm" : {
         "OBO::Parser::NCBIParser" : "undef"
      },
      "lib/OBO/Parser/OBOParser.pm" : {
         "OBO::Parser::OBOParser" : "undef"
      },
      "lib/OBO/Parser/OWLParser.pm" : {
         "OBO::Parser::OWLParser" : "undef"
      },
      "lib/OBO/Parser/UniProtParser.pm" : {
         "OBO::Parser::UniProtParser" : "undef"
      },
      "lib/OBO/Util/DbxrefSet.pm" : {
         "OBO::Util::DbxrefSet" : "undef"
      },
      "lib/OBO/Util/IDspaceSet.pm" : {
         "OBO::Util::IDspaceSet" : "undef"
      },
      "lib/OBO/Util/InstanceSet.pm" : {
         "OBO::Util::InstanceSet" : "undef"
      },
      "lib/OBO/Util/Map.pm" : {
         "OBO::Util::Map" : "undef"
      },
      "lib/OBO/Util/ObjectIdSet.pm" : {
         "OBO::Util::ObjectIdSet" : "undef"
      },
      "lib/OBO/Util/ObjectSet.pm" : {
         "OBO::Util::ObjectSet" : "undef"
      },
      "lib/OBO/Util/Ontolome.pm" : {
         "OBO::Util::Ontolome" : "undef"
      },
      "lib/OBO/Util/RelationshipTypeSet.pm" : {
         "OBO::Util::RelationshipTypeSet" : "undef"
      },
      "lib/OBO/Util/Set.pm" : {
         "OBO::Util::Set" : "undef"
      },
      "lib/OBO/Util/SubsetDefMap.pm" : {
         "OBO::Util::SubsetDefMap" : "undef"
      },
      "lib/OBO/Util/SynonymSet.pm" : {
         "OBO::Util::SynonymSet" : "undef"
      },
      "lib/OBO/Util/SynonymTypeDefSet.pm" : {
         "OBO::Util::SynonymTypeDefSet" : "undef"
      },
      "lib/OBO/Util/TermSet.pm" : {
         "OBO::Util::TermSet" : "undef"
      },
      "lib/OBO/XO/OBO_ID.pm" : {
         "OBO::XO::OBO_ID" : "undef"
      },
      "lib/OBO/XO/OBO_ID_Set.pm" : {
         "OBO::XO::OBO_ID_Set" : "undef"
      },
      "lib/OBO/XO/OBO_ID_Term_Map.pm" : {
         "OBO::XO::OBO_ID_Term_Map" : "undef"
      }
   },
   "vname" : "ONTO-PERL-1.45"
}