Polloc

Metadata

Analyzed metadata and errors of Polloc.

{
   "abstracts" : {
      "Bio::Polloc" : "Perl library for Polymorphic Locy analyses",
      "Bio::Polloc::Genome" : "A group of sequences from the same organism",
      "Bio::Polloc::GroupCriteria" : "Rules to group loci",
      "Bio::Polloc::GroupCriteria::operator" : "An acillary object for Bio::Polloc::GroupCriteria",
      "Bio::Polloc::GroupCriteria::operator::bool" : "A boolean operator",
      "Bio::Polloc::GroupCriteria::operator::cons" : "A constant",
      "Bio::Polloc::GroupCriteria::operator::num" : "A numeric operator",
      "Bio::Polloc::GroupCriteria::operator::seq" : "A sequence operator",
      "Bio::Polloc::LociGroup" : "A group of loci",
      "Bio::Polloc::Locus::amplicon" : "An amplification product",
      "Bio::Polloc::Locus::composition" : "A composition feature",
      "Bio::Polloc::Locus::crispr" : "A CRISPR locus",
      "Bio::Polloc::Locus::extend" : "A feature based on another one",
      "Bio::Polloc::Locus::generic" : "An unknown feature",
      "Bio::Polloc::Locus::pattern" : "A loci matching a pattern.",
      "Bio::Polloc::Locus::repeat" : "A repetitive locus",
      "Bio::Polloc::LocusI" : "Interface of C<Bio::Polloc::Locus::*> objects",
      "Bio::Polloc::LocusIO" : "I/O interface of C<Bio::Polloc::Locus::*> objects",
      "Bio::Polloc::LocusIO::gff3" : "A LocusIO for Gff3",
      "Bio::Polloc::Polloc::Config" : "Handles .cfg files",
      "Bio::Polloc::Polloc::Error" : "Errors handler for the Bio::Polloc::* packages",
      "Bio::Polloc::Polloc::IO" : "I/O interface for the Bio::Polloc::* packages",
      "Bio::Polloc::Polloc::Version" : "Provides central package-wide version",
      "Bio::Polloc::Rule::boolean" : "A rule of type boolean operator",
      "Bio::Polloc::Rule::composition" : "A rule of type composition",
      "Bio::Polloc::Rule::crispr" : "A rule of type CRISPR",
      "Bio::Polloc::Rule::pattern" : "A rule determined by a pattern",
      "Bio::Polloc::Rule::profile" : "A rule of type profile",
      "Bio::Polloc::Rule::repeat" : "A rule of type repeat",
      "Bio::Polloc::Rule::tandemrepeat" : "A rule of type tandemrepeat",
      "Bio::Polloc::RuleI" : "Generic rules interface",
      "Bio::Polloc::RuleIO" : "I/O interface for the sets of rules (L<Bio::Polloc::RuleI>)",
      "Bio::Polloc::RuleSet::cfg" : "Implementation of Bio::Polloc::RuleIO for .cfg files",
      "Bio::Polloc::Typing::bandingPattern" : "banding-pattern-based methods\nfor typing assessment",
      "Bio::Polloc::Typing::bandingPattern::amplification" : "banding-pattern-based\nmethods for typing assessment using amplification",
      "Bio::Polloc::TypingI" : "Generic typing interface",
      "Bio::Polloc::TypingIO" : "I/O interface for genotyping methods (L<Bio::Polloc::TypingI>)",
      "Bio::Polloc::TypingIO::cfg" : "Implementation of Bio::Polloc::TypingIO for .cfg files"
   },
   "author" : "LRR",
   "buildfile_executable" : 0,
   "dir_lib" : "lib",
   "dir_t" : "t",
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      "lib/Bio",
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      "lib/Bio/Polloc/Rule",
      "lib/Bio/Polloc/Typing",
      "lib/Bio/Polloc/Typing/bandingPattern",
      "lib/Bio/Polloc/GroupCriteria",
      "lib/Bio/Polloc/GroupCriteria/operator",
      "lib/Bio/Polloc/Polloc",
      "lib/Bio/Polloc/LocusIO",
      "lib/Bio/Polloc/Locus",
      "t",
      "t/03-loci",
      "t/01-genomes",
      "t/05-typing",
      "t/04-grouping",
      "t/02-rules",
      "t/02-rules/03-rule",
      "t/00-load",
      "scripts",
      "examples"
   ],
   "dist" : "Polloc",
   "dynamic_config" : 0,
   "error" : {
      "no_pod_errors" : "Bio::Polloc-1.0503/lib/Bio/Polloc/Genome.pm -- Around line 44:  Expected '=item *'Around line 77:  Expected '=item *'Around line 137:  Expected '=item *'Around line 164:  Expected '=item *'Around line 168:  Expected '=item *'Bio::Polloc-1.0503/lib/Bio/Polloc/RuleI.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 48:  Expected '=item *'Around line 66:  Expected '=item *'Around line 70:  Expected '=item *'Around line 126:  Expected '=item *'Around line 135:  Expected '=item *'Around line 140:  Expected '=item *'Around line 177:  Expected '=item *'Around line 182:  Expected '=item *'Around line 211:  Expected '=item *'Around line 215:  Expected '=item *'Around line 219:  Expected '=item *'Around line 223:  Expected '=item *'Around line 252:  Expected '=item *'Around line 256:  Expected '=item *'Around line 260:  Expected '=item *'Around line 289:  Expected '=item *'Around line 293:  Expected '=item *'Around line 316:  Expected '=item *'Around line 320:  Expected '=item *'Around line 324:  Expected '=item *'Around line 359:  Expected '=item *'Around line 384:  Expected '=item *'Around line 405:  Expected '=item *'Around line 409:  Expected '=item *'Around line 435:  Expected '=item *'Around line 439:  Expected '=item *'Around line 443:  Expected '=item *'Around line 461:  Expected '=item *'Around line 465:  Expected '=item *'Around line 479:  Expected '=item *'Around line 508:  Expected '=item *'Around line 512:  Expected '=item *'Around line 559:  Expected '=item *'Around line 633:  Expected '=item *'Around line 694:  Expected '=item *'Around line 698:  Expected '=item *'Bio::Polloc-1.0503/lib/Bio/Polloc/GroupCriteria.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 61:  Expected '=item *'Around line 83:  Expected '=item *'Around line 186:  Expected '=item *'Around line 200:  Expected '=item *'Around line 204:  Expected '=item *'Around line 250:  Expected '=item *'Around line 289:  Expected '=item *'Around line 293:  Expected '=item *'Around line 297:  Expected '=item *'Around line 322:  Expected '=item *'Around line 423:  Expected '=item *'Around line 467:  Expected '=item *'Around line 477:  Expected '=item *'Around line 482:  Expected '=item *'Around line 620:  Expected '=item *'Around line 630:  Expected '=item *'Around line 634:  Expected '=item *'Around line 671:  Expected '=item *'Around line 675:  Expected '=item *'Around line 679:  Expected '=item *'Around line 719:  Expected '=item *'Around line 743:  Expected '=item *'Around line 748:  Expected '=item *'Around line 953:  Expected '=item *'Around line 957:  Expected '=item *'Around line 1079:  Expected '=item *'Around line 1083:  Expected '=item *'Bio::Polloc-1.0503/lib/Bio/Polloc/RuleSet/cfg.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 53:  Expected text after =item, not a bulletAround line 57:  Expected text after =item, not a bulletBio::Polloc-1.0503/lib/Bio/Polloc/Rule/crispr.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 57:  Expected '=item *'Around line 67:  Expected '=item *'Bio::Polloc-1.0503/lib/Bio/Polloc/GroupCriteria/operator.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 15:  Non-ASCII character seen before =encoding in '# ...'. Assuming UTF-8Bio::Polloc-1.0503/lib/Bio/Polloc/Polloc/Config.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 62:  Expected '=item *'Around line 97:  Expected '=item *'Around line 174:  Expected '=item *'Around line 196:  Expected '=item *'Around line 230:  Expected '=item *'Around line 240:  Expected '=item *'Around line 264:  Expected '=item *'Around line 278:  Expected '=item *'Around line 339:  Expected '=item *'Around line 358:  Expected '=item *'Around line 404:  Expected '=item *'Around line 408:  Expected '=item *'Around line 434:  Expected '=item *'Around line 438:  Expected '=item *'Around line 473:  Expected '=item *'Around line 559:  Expected '=item *'Around line 610:  Expected '=item *'Around line 684:  Expected '=item *'Around line 750:  Expected '=item *'Around line 792:  Expected '=item *'Around line 797:  Expected '=item *'Bio::Polloc-1.0503/lib/Bio/Polloc/Locus/crispr.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 33:  Expected '=item *'Around line 66:  Expected '=item *'Around line 70:  Expected '=item *'Around line 93:  Expected '=item *'Around line 97:  Expected '=item *'Around line 119:  Expected '=item *'Around line 123:  Expected '=item *'Around line 145:  Expected '=item *'",
      "use_warnings" : "Bio::Polloc::RuleSet::cfg, Bio::Polloc::Rule::profile, Bio::Polloc::Locus::generic, Bio::Polloc::Polloc::Root, Bio::Polloc::Polloc::IO, Bio::Polloc::Rule::crispr, Bio::Polloc::Rule::pattern, Bio::Polloc::Locus::crispr, Bio::Polloc::Locus::pattern, Bio::Polloc::Rule::tandemrepeat, Bio::Polloc::Genome, Bio::Polloc::Polloc::Config, Bio::Polloc::LocusI, Bio::Polloc::Rule::composition, Bio::Polloc::GroupCriteria::operator::seq, Bio::Polloc::Rule::boolean, Bio::Polloc::Typing::bandingPattern::amplification, Bio::Polloc, Bio::Polloc::RuleIO, Bio::Polloc::Rule::repeat, Bio::Polloc::GroupCriteria::operator::bool, Bio::Polloc::Locus::repeat, Bio::Polloc::TypingIO::cfg, Bio::Polloc::LociGroup, Bio::Polloc::GroupCriteria::operator::num, Bio::Polloc::GroupCriteria::operator::cons, Bio::Polloc::TypingI, Bio::Polloc::TypingIO, Bio::Polloc::RuleI, Bio::Polloc::Typing::bandingPattern, Bio::Polloc::Locus::extend, Bio::Polloc::LocusIO, Bio::Polloc::GroupCriteria, Bio::Polloc::Locus::composition, Bio::Polloc::Locus::amplicon, Bio::Polloc::GroupCriteria::operator, Bio::Polloc::LocusIO::gff3, Bio::Polloc::Polloc::Version, Bio::Polloc::Polloc::Error"
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