go-db-perl

Metadata

Analyzed metadata and errors of go-db-perl.

{
   "abstracts_in_pod" : {
      "Args" : "string representing the method to be called.\n         arrayref representing the parameters of the method\n         string representing the hash to be used for storing the return",
      "GO" : "Gene Ontology Simple Utility Class",
      "GO::AppHandle" : "Gene Ontology Data API handle",
      "GO::Handlers::genericdb" : "",
      "GO::Handlers::godb" : "Stores parse XML in GO DB",
      "GO::Tango" : "Tango ANnotates GO"
   },
   "author" : "SJCARBON",
   "buildfile_executable" : 0,
   "dir_t" : "t",
   "dirs_array" : [
      "CVS",
      "doc",
      "doc/CVS",
      "t",
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      "scripts",
      "scripts/CVS",
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      "GO/Handlers/CVS",
      "GO/AppHandles",
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   ],
   "dist" : "go-db-perl",
   "easily_repackageable_by_debian" : "no_stdin_for_prompting",
   "easily_repackageable_by_fedora" : "fits_fedora_license",
   "error" : {
      "manifest_matches_dist" : [
         "MANIFEST (128) does not match dist (191):",
         "Missing in MANIFEST: CVS/Entries, CVS/Repository, CVS/Root, GO.pm, GO/AppHandles/.#AppHandleSqlImpl.pm.1.88, GO/AppHandles/.#AppHandleSqlImpl.pm.1.89, GO/AppHandles/CVS/Entries, GO/AppHandles/CVS/Repository, GO/AppHandles/CVS/Root, GO/CVS/Entries, GO/CVS/Repository, GO/CVS/Root, GO/Handlers/CVS/Entries, GO/Handlers/CVS/Repository, GO/Handlers/CVS/Root, GO/Reasoner.pm, doc/CVS/Entries, doc/CVS/Repository, doc/CVS/Root, scripts/CVS/Entries, scripts/CVS/Repository, scripts/CVS/Root, scripts/fill-path.pl, scripts/go-create-database-and-load.pl, scripts/go-db-reasoner.pl, scripts/go-do-nothing.pl, scripts/go-dump-owl.pl, scripts/go-noseq-load.pl, scripts/go-process-report-template.pl, scripts/go_db_install.pl, scripts/load-go-assoc-bulk.pl, scripts/load-linkfile-into-graph_path.pl, scripts/load-ppod-set-full.pl, scripts/load-refg-set-full.pl, scripts/load-refg-set.pl, scripts/load-sp-bulk.pl, scripts/load-tax-hierarchy-into-db.pl, scripts/scan_for_non-ascii.pl, t/CVS/Entries, t/CVS/Repository, t/CVS/Root, t/d190xrf_abbs.t, t/d200multispecies.t, t/d210annotation_properties.t, t/d220obsolete_metadata.t, t/d230load_synonym.t, t/d240load_refg.t, t/d250multiqualifiers.t, t/d260regulates.t, t/d270annotation_double_taxon.t, t/data/CVS/Entries, t/data/CVS/Repository, t/data/CVS/Root, t/data/GO.xrf_abbs, t/data/gene_assoc-with-quals.mgi, t/data/gene_association-ache.all, t/data/gene_association.multitaxontest, t/data/gene_association.pamgo.test, t/data/gene_association.test_properties, t/data/go-dual-test.obo, t/data/obsolete.obo, t/data/regulation_test.obo, t/data/test_synonym.obo, t/t460deep_product_count.t",
         "Missing in Dist: META.yml"
      ],
      "metayml_is_parsable" : "META.yml was not found",
      "no_pod_errors" : "go-db-perl-0.04/scripts/go-prepare-release.pl -- Around line 445:  You forgot a '=back' before '=head1'go-db-perl-0.04/scripts/go-do-nothing.pl -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 410:  You forgot a '=back' before '=head1'go-db-perl-0.04/GO/AppHandle.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 113:  Non-ASCII character seen before =encoding in  'hþtp://www.geneontology.org'. Assuming ISO8859-1Around line 1183:  '=item' outside of any '=over'Around line 1215:  You forgot a '=back' before '=head3'go-db-perl-0.04/GO/AppHandles/AppHandleSqlImpl.pm -- POD ERRORSHey! The above document had some coding errors, which are explained below:Around line 1100:  '=item' outside of any '=over'  =over without closing =back",
      "use_strict" : "GO::TestHarness, GO::Handlers::db",
      "use_warnings" : "GO::Tango, GO::AppHandles::AppHandleCWrapper, GO::AppHandle, GO::TestHarness, GO::DebugUtils, GO::Admin, GO::AppHandles::AppHandleCachingImpl, GO::Handlers::db, GO::AppHandles::AppHandleSqlImpl, GO::Handlers::genericdb, GO::Handlers::godb, GO::AppHandles::AppHandlePgImpl, GO, GO::Reasoner, GO::SqlWrapper, GO::AppHandles::AppHandleAbstractSqlImpl, GO::AppHandles::AppHandleChadoSqlImpl"
   },
   "extension" : "tar.gz",
   "extractable" : 1,
   "extracts_nicely" : 1,
   "file__build" : 0,
   "file_blib" : 0,
   "file_build" : 0,
   "file_changelog" : "Changes",
   "file_makefile" : 0,
   "file_makefile_pl" : "Makefile.PL",
   "file_manifest" : "MANIFEST",
   "file_pm_to_blib" : 0,
   "file_readme" : "README",
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      "CVS/Entries",
      "doc/go-db-perl-doc.html",
      "doc/CVS/Repository",
      "doc/CVS/Root",
      "doc/CVS/Entries",
      "t/t080speed.t",
      "t/t460deep_product_count.t",
      "t/d080loadxrefs.t",
      "t/d250multiqualifiers.t",
      "t/t260fetchall.t",
      "t/t170open_graph.t",
      "t/d130load_obo2.t",
      "t/t350mgievid.t",
      "t/d090n_chilodren.t",
      "t/d010fetch.t",
      "t/t060assocs.t",
      "t/t300selectedassocs.t",
      "t/t120querybyproduct.t",
      "t/d100species.t",
      "t/t190term_sort.t",
      "t/t240wild_card_product_search.t",
      "t/d020mods.t",
      "t/t210checkgraph.t",
      "t/t070associations.t",
      "t/d061detect_assoc_err.t",
      "t/d120load_obo.t",
      "t/t250species_filter.t",
      "t/d060fillpath.t",
      "t/d050termclash.t",
      "t/t150deepproduct.t",
      "t/d220obsolete_metadata.t",
      "t/d260regulates.t",
      "t/d000setup.t",
      "t/t430selected_association_list.t",
      "t/d210annotation_properties.t",
      "t/d240load_refg.t",
      "t/t040cwrapper.t",
      "t/d230load_synonym.t",
      "t/d190xrf_abbs.t",
      "t/t130blastout.t",
      "t/t100shallow.t",
      "t/t320combinedquery.t",
      "t/t140n_children.t",
      "t/d070fillcount.t",
      "t/d170subset.t",
      "t/t420selected_gene_products.t",
      "t/d040graph.t",
      "t/t150n_parents.t",
      "t/t180sort.t",
      "t/t270getprod.t",
      "t/d200multispecies.t",
      "t/t160n_associations.t",
      "t/t280prd_by_sp.t",
      "t/d160logicaldef.t",
      "t/d110seq.t",
      "t/t450enrichedterm.t",
      "t/t400comment.t",
      "t/t440godb_prestore.t",
      "t/t410gp_synonyms.t",
      "t/t380iterator.t",
      "t/d140temporal.t",
      "t/t110query.t",
      "t/t340xml.t",
      "t/t310noterm.t",
      "t/t050parent_check.t",
      "t/t360treeiter.t",
      "t/t220filter_species_db.t",
      "t/d270annotation_double_taxon.t",
      "t/t390defref.t",
      "t/t320sortxrefs.t",
      "t/t200recursive_close.t",
      "t/t090getroot.t",
      "t/t140seq.t",
      "t/t290recursiveprods.t",
      "t/d030alternateids.t",
      "t/CVS/Repository",
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      "t/data/orthog.obo.KEEP",
      "t/data/go-dual-test.obo",
      "t/data/goslim_generic.obo",
      "t/data/baby-function.dat",
      "t/data/gene_association.test_properties",
      "t/data/xrefs-function.dat",
      "t/data/test_synonym.obo",
      "t/data/biosynth1.obo",
      "t/data/baby-process.dat",
      "t/data/gene_association.goa_test",
      "t/data/gene_association.multitaxontest",
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      "t/data/GO.xrf_abbs",
      "t/data/test-nucleolar.obo",
      "t/data/tmp.obo",
      "t/data/orthog.obo",
      "t/data/gene_association.GeneDB_Pfalciparum",
      "t/data/sgd.blast.out",
      "t/data/function-withaltid.dat",
      "t/data/test_bad_function.dat",
      "t/data/GO.fake.defs",
      "t/data/ribosome.obo",
      "t/data/biosynth2.obo",
      "t/data/anatxp.obo",
      "t/data/goslim_generic_v1_2.obo",
      "t/data/test-nucleolar.defs",
      "t/data/obo.el",
      "t/data/regulation_test.obo",
      "t/data/go-truncated.obo",
      "t/data/obsolete.obo",
      "t/data/test.obo",
      "t/data/test_blah2go",
      "t/data/comp-analysis.obo",
      "t/data/temporal.obo",
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      "t/data/mini-fb-assocs.fb",
      "t/data/gene_association.pamgo.test",
      "t/data/muscle.obo",
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