Kwalitee Issues

has_human_readable_license

Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: go-perl-0.15/GO/Parser.pm-- Around line 173: You forgot a '=back' before '=head2'

package_version_matches_dist_version

Fix the version(s).

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: GO::Handlers::obo, GO::Handlers::obo_sxpr, GO::Handlers::obo_xml, GO::Handlers::summary, GO::Handlers::sxpr, GO::Handlers::xml, GO::IO::XML, GO::Model::Ontology, GO::Parsers::obo_parser, GO::Parsers::obo_xml_parser, GO::Parsers::owl_parser

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: GO/Basic.pm, GO/Handlers/abstract_prolog_writer.pm, GO/Handlers/abstract_sql_writer.pm, GO/Handlers/base.pm, GO/Handlers/go_def.pm, GO/Handlers/go_ont.pm, GO/Handlers/go_xref.pm, GO/Handlers/godb_prestore.pm, GO/Handlers/lexanalysis.pm, GO/Handlers/lexanalysis2sql.pm, GO/Handlers/obj.pm, GO/Handlers/obj_storable.pm, GO/Handlers/obj_yaml.pm, GO/Handlers/obo.pm, GO/Handlers/obo_godb_flat.pm, GO/Handlers/obo_html.pm, GO/Handlers/obo_sxpr.pm, GO/Handlers/obo_text.pm, GO/Handlers/obo_xml.pm, GO/Handlers/owl.pm, GO/Handlers/owl_to_obo_text.pm, GO/Handlers/pathlist.pm, GO/Handlers/prolog.pm, GO/Handlers/rdf.pm, GO/Handlers/summary.pm, GO/Handlers/sxpr.pm, GO/Handlers/tbl.pm, GO/Handlers/text_html.pm, GO/Handlers/xml.pm, GO/Handlers/xsl_base.pm, GO/IO/Analysis.pm, GO/IO/Blast.pm, GO/IO/Dotty.pm, GO/IO/OBDXML.pm, GO/IO/ObanOwl.pm, GO/IO/RDFXML.pm, GO/IO/XML.pm, GO/IO/go_assoc.pm, GO/Metadata/Panther.pm, GO/Model/Association.pm, GO/Model/CrossProduct.pm, GO/Model/DB.pm, GO/Model/Evidence.pm, GO/Model/GeneProduct.pm, GO/Model/Graph.pm, GO/Model/GraphIterator.pm, GO/Model/GraphNodeInstance.pm, GO/Model/LogicalDefinition.pm, GO/Model/Modification.pm, GO/Model/Ontology.pm, GO/Model/Path.pm, GO/Model/Property.pm, GO/Model/Relationship.pm, GO/Model/Restriction.pm, GO/Model/Root.pm, GO/Model/Seq.pm, GO/Model/Species.pm, GO/Model/Term.pm, GO/Model/TreeIterator.pm, GO/Model/Xref.pm, GO/ObjCache.pm, GO/ObjFactory.pm, GO/Parser.pm, GO/Parsers/ParserEventNames.pm, GO/Parsers/base_parser.pm, GO/Parsers/generic_tagval_parser.pm, GO/Parsers/go_assoc_parser.pm, GO/Parsers/go_def_parser.pm, GO/Parsers/go_ids_parser.pm, GO/Parsers/go_ont_parser.pm, GO/Parsers/go_xref_parser.pm, GO/Parsers/locuslink_parser.pm, GO/Parsers/mesh_parser.pm, GO/Parsers/mgi_assoc_parser.pm, GO/Parsers/ncbi_taxon_names_parser.pm, GO/Parsers/ncbi_taxonomy_parser.pm, GO/Parsers/obj_emitter.pm, GO/Parsers/obj_storable_parser.pm, GO/Parsers/obj_yaml_parser.pm, GO/Parsers/obo_parser.pm, GO/Parsers/obo_text_parser.pm, GO/Parsers/obo_xml_parser.pm, GO/Parsers/owl_parser.pm, GO/Parsers/references_parser.pm, GO/Parsers/refgenomes_parser.pm, GO/Parsers/unknown_format_parser.pm, GO/Parsers/xrf_abbs_parser.pm, GO/Utils.pm

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: GO::Basic, GO::Handlers::abstract_prolog_writer, GO::Handlers::abstract_sql_writer, GO::Handlers::base, GO::Handlers::go_def, GO::Handlers::go_ont, GO::Handlers::go_xref, GO::Handlers::godb_prestore, GO::Handlers::lexanalysis, GO::Handlers::lexanalysis2sql, GO::Handlers::obj, GO::Handlers::obj_storable, GO::Handlers::obj_yaml, GO::Handlers::obo, GO::Handlers::obo_godb_flat, GO::Handlers::obo_html, GO::Handlers::obo_sxpr, GO::Handlers::obo_text, GO::Handlers::obo_xml, GO::Handlers::owl, GO::Handlers::owl_to_obo_text, GO::Handlers::pathlist, GO::Handlers::prolog, GO::Handlers::rdf, GO::Handlers::summary, GO::Handlers::sxpr, GO::Handlers::tbl, GO::Handlers::text_html, GO::Handlers::xml, GO::Handlers::xsl_base, GO::IO::Analysis, GO::IO::Blast, GO::IO::Dotty, GO::IO::OBDXML, GO::IO::ObanOwl, GO::IO::RDFXML, GO::IO::XML, GO::IO::go_assoc, GO::Model::Association, GO::Model::CrossProduct, GO::Model::DB, GO::Model::Evidence, GO::Model::GeneProduct, GO::Model::Graph, GO::Model::GraphIterator, GO::Model::GraphNodeInstance, GO::Model::LogicalDefinition, GO::Model::Modification, GO::Model::Ontology, GO::Model::Path, GO::Model::Property, GO::Model::Relationship, GO::Model::Restriction, GO::Model::Root, GO::Model::Seq, GO::Model::Species, GO::Model::Term, GO::Model::TreeIterator, GO::Model::Xref, GO::ObjCache, GO::ObjFactory, GO::Parser, GO::Parsers::ParserEventNames, GO::Parsers::base_parser, GO::Parsers::generic_tagval_parser, GO::Parsers::go_assoc_parser, GO::Parsers::go_def_parser, GO::Parsers::go_ids_parser, GO::Parsers::go_ont_parser, GO::Parsers::go_xref_parser, GO::Parsers::locuslink_parser, GO::Parsers::mesh_parser, GO::Parsers::mgi_assoc_parser, GO::Parsers::ncbi_taxon_names_parser, GO::Parsers::ncbi_taxonomy_parser, GO::Parsers::obj_emitter, GO::Parsers::obj_storable_parser, GO::Parsers::obj_yaml_parser, GO::Parsers::obo_parser, GO::Parsers::obo_text_parser, GO::Parsers::obo_xml_parser, GO::Parsers::owl_parser, GO::Parsers::references_parser, GO::Parsers::refgenomes_parser, GO::Parsers::unknown_format_parser, GO::Parsers::xrf_abbs_parser, GO::Utils

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

Modules

Name Abstract Version View
GO::Basic basic procedural interface to go-perl metacpan
GO::Handlers::abstract_prolog_writer metacpan
GO::Handlers::abstract_sql_writer metacpan
GO::Handlers::base metacpan
GO::Handlers::go_def metacpan
GO::Handlers::go_ont metacpan
GO::Handlers::go_xref metacpan
GO::Handlers::godb_prestore transforms OBO XML to GODB XML metacpan
GO::Handlers::lexanalysis metacpan
GO::Handlers::lexanalysis2sql metacpan
GO::Handlers::obj parses GO files into GO object model metacpan
GO::Handlers::obj_storable metacpan
GO::Handlers::obj_yaml metacpan
GO::Handlers::obo metacpan
GO::Handlers::obo_godb_flat metacpan
GO::Handlers::obo_html metacpan
GO::Handlers::obo_sxpr metacpan
GO::Handlers::obo_text metacpan
GO::Handlers::obo_xml metacpan
GO::Handlers::owl writes OWL metacpan
GO::Handlers::owl_to_obo_text metacpan
GO::Handlers::pathlist metacpan
GO::Handlers::prolog metacpan
GO::Handlers::rdf metacpan
GO::Handlers::summary metacpan
GO::Handlers::sxpr metacpan
GO::Handlers::tbl metacpan
GO::Handlers::text_html metacpan
GO::Handlers::xml metacpan
GO::Handlers::xsl_base metacpan
GO::IO::Analysis preliminary analysis object metacpan
GO::IO::Blast Gene Ontology Blast Reports DEPRECATED metacpan
GO::IO::Dotty metacpan
GO::IO::OBDXML metacpan
GO::IO::ObanOwl metacpan
GO::IO::RDFXML metacpan
GO::IO::XML metacpan
GO::IO::go_assoc metacpan
GO::Metadata::Panther Species info for data used by Panther Clusters metacpan
GO::Model::Association metacpan
GO::Model::CrossProduct metacpan
GO::Model::DB metacpan
GO::Model::Evidence metacpan
GO::Model::GeneProduct metacpan
GO::Model::Graph a collection of relationships over terms metacpan
GO::Model::GraphIterator metacpan
GO::Model::GraphNodeInstance a graph node located in a tree metacpan
GO::Model::LogicalDefinition metacpan
GO::Model::Modification metacpan
GO::Model::Ontology metacpan
GO::Model::Path metacpan
GO::Model::Property metacpan
GO::Model::Relationship metacpan
GO::Model::Restriction metacpan
GO::Model::Root metacpan
GO::Model::Seq metacpan
GO::Model::Species metacpan
GO::Model::Term a term or concept in an ontology metacpan
GO::Model::TreeIterator metacpan
GO::Model::Xref metacpan
GO::ObjCache metacpan
GO::ObjFactory GO Object Factory metacpan
GO::Parser parses all GO files formats and types metacpan
GO::Parsers::ParserEventNames exports constants corresponding to XML metacpan
GO::Parsers::base_parser base class for parsers metacpan
GO::Parsers::generic_tagval_parser syntax parsing of GO .def flat files metacpan
GO::Parsers::go_assoc_parser syntax parsing of GO gene-association flat files metacpan
GO::Parsers::go_def_parser syntax parsing of GO .def flat files metacpan
GO::Parsers::go_ids_parser syntax parsing of flat files containing GO IDs. metacpan
GO::Parsers::go_ont_parser syntax parsing of GO .ontology flat files metacpan
GO::Parsers::go_xref_parser syntax parsing of GO xref flat files (eg eg2go, metacyc2go) metacpan
GO::Parsers::locuslink_parser metacpan
GO::Parsers::mesh_parser Parses Mesh ascii text files metacpan
GO::Parsers::mgi_assoc_parser parses MGI gene assoc stanza files metacpan
GO::Parsers::ncbi_taxon_names_parser OBO Flat file parser object metacpan
GO::Parsers::ncbi_taxonomy_parser metacpan
GO::Parsers::obj_emitter metacpan
GO::Parsers::obj_storable_parser metacpan
GO::Parsers::obj_yaml_parser metacpan
GO::Parsers::obo_parser metacpan
GO::Parsers::obo_text_parser OBO Flat file parser object metacpan
GO::Parsers::obo_xml_parser metacpan
GO::Parsers::owl_parser metacpan
GO::Parsers::references_parser syntax parsing of GO.refences files metacpan
GO::Parsers::refgenomes_parser syntax parsing of GO .def flat files metacpan
GO::Parsers::unknown_format_parser base class for parsers metacpan
GO::Parsers::xrf_abbs_parser syntax parsing of GO xrf_abbs flat files metacpan
GO::Utils metacpan

Other Files

Changes metacpan
MANIFEST metacpan
META.json metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan