CPANTS

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::NEXUS, Bio::NEXUS::AssumptionsBlock, Bio::NEXUS::Block, Bio::NEXUS::CharactersBlock, Bio::NEXUS::CodonsBlock, Bio::NEXUS::DataBlock, Bio::NEXUS::DistancesBlock, Bio::NEXUS::Functions, Bio::NEXUS::HistoryBlock, Bio::NEXUS::Matrix, Bio::NEXUS::NHXCmd, Bio::NEXUS::Node, Bio::NEXUS::NotesBlock, Bio::NEXUS::SetsBlock, Bio::NEXUS::SpanBlock, Bio::NEXUS::TaxUnit, Bio::NEXUS::TaxUnitSet, Bio::NEXUS::TaxaBlock, Bio::NEXUS::Tools::GraphicsParams, Bio::NEXUS::Tools::NexModifier, Bio::NEXUS::Tools::NexPlotter, Bio::NEXUS::Tree, Bio::NEXUS::TreesBlock, Bio::NEXUS::UnalignedBlock, Bio::NEXUS::UnknownBlock, Bio::NEXUS::Util::Exceptions, Bio::NEXUS::Util::Logger, Bio::NEXUS::WeightSet

no_invalid_versions

Fix the version numbers so that version::is_lax($version) returns true.

Error:

lib/Bio/NEXUS/AssumptionsBlock.pm: HASH(0x55c8d28a6ca8)
lib/Bio/NEXUS/Block.pm: HASH(0x55c8d1d838e8)
lib/Bio/NEXUS/CharactersBlock.pm: HASH(0x55c8d2109058)
lib/Bio/NEXUS/CodonsBlock.pm: HASH(0x55c8d283def8)
lib/Bio/NEXUS/DataBlock.pm: HASH(0x55c8d2108728)
lib/Bio/NEXUS/DistancesBlock.pm: HASH(0x55c8d283d568)
lib/Bio/NEXUS/Functions.pm: HASH(0x55c8d1f4b790)
lib/Bio/NEXUS/HistoryBlock.pm: HASH(0x55c8d206b418)
lib/Bio/NEXUS/Matrix.pm: HASH(0x55c8d2108458)
lib/Bio/NEXUS/NHXCmd.pm: HASH(0x55c8d283d8f8)
lib/Bio/NEXUS/Node.pm: HASH(0x55c8d2067d18)
lib/Bio/NEXUS/NotesBlock.pm: HASH(0x55c8d28e17b0)
lib/Bio/NEXUS/SetsBlock.pm: HASH(0x55c8d1d60848)
lib/Bio/NEXUS/SpanBlock.pm: HASH(0x55c8d206b460)
lib/Bio/NEXUS/TaxUnit.pm: HASH(0x55c8d28a6ea0)
lib/Bio/NEXUS/TaxUnitSet.pm: HASH(0x55c8d1c77740)
lib/Bio/NEXUS/TaxaBlock.pm: HASH(0x55c8d20fa168)
lib/Bio/NEXUS/Tools/GraphicsParams.pm: HASH(0x55c8d211a740)
lib/Bio/NEXUS/Tools/NexModifier.pm: HASH(0x55c8d2124000)
lib/Bio/NEXUS/Tools/NexPlotter.pm: HASH(0x55c8d21061e8)
lib/Bio/NEXUS/Tree.pm: HASH(0x55c8d20fcaf0)
lib/Bio/NEXUS/TreesBlock.pm: HASH(0x55c8d21243f0)
lib/Bio/NEXUS/UnalignedBlock.pm: HASH(0x55c8cf5f1428)
lib/Bio/NEXUS/UnknownBlock.pm: HASH(0x55c8d283e180)
lib/Bio/NEXUS/WeightSet.pm: HASH(0x55c8d211a608)

2 Experimental Issues

meta_yml_has_provides: Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
meta_yml_has_repository_resource: Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

Modules

Name	Abstract	Version	View
Bio::NEXUS	An object-oriented Perl Applications Programming Interface (API) for the NEXUS file format	0.74	metacpan
Bio::NEXUS::AssumptionsBlock	Represents ASSUMPTIONS block of a NEXUS file		metacpan
Bio::NEXUS::Block	Provides useful functions for blocks in NEXUS file (parent class).		metacpan
Bio::NEXUS::CharactersBlock	Represents a CHARACTERS Block (Data or Characters) of a NEXUS file		metacpan
Bio::NEXUS::CodonsBlock	Represents CODONS block in NEXUS file		metacpan
Bio::NEXUS::DataBlock	Represents the deprecated DATA Block in NEXUS file.		metacpan
Bio::NEXUS::DistancesBlock	Represents DISTANCES block in NEXUS file		metacpan
Bio::NEXUS::Functions	Provides private utiliy functions for the module		metacpan
Bio::NEXUS::HistoryBlock	Represents a HISTORY block of a NEXUS file		metacpan
Bio::NEXUS::Matrix	Provides functions for handling blocks that have matrices		metacpan
Bio::NEXUS::NHXCmd	Provides functions for manipulating nodes in trees		metacpan
Bio::NEXUS::Node	Provides functions for manipulating nodes in trees		metacpan
Bio::NEXUS::NotesBlock	Represents a NOTES block in a NEXUS file.		metacpan
Bio::NEXUS::SetsBlock	Represents SETS block of a NEXUS file		metacpan
Bio::NEXUS::SpanBlock	Represent SPAN block in a NEXUS file (contains meta data).		metacpan
Bio::NEXUS::TaxUnit	Represents a taxon unit in a NEXUS file		metacpan
Bio::NEXUS::TaxUnitSet	Represents a sets of OTUS (Bio::NEXUS::TaxUnits objects) in a NEXUS file		metacpan
Bio::NEXUS::TaxaBlock	Represents TAXA block of a NEXUS file		metacpan
Bio::NEXUS::Tools::GraphicsParams			metacpan
Bio::NEXUS::Tools::NexModifier			metacpan
Bio::NEXUS::Tools::NexPlotter			metacpan
Bio::NEXUS::Tree	Provides functions for manipulating trees		metacpan
Bio::NEXUS::TreesBlock	Represents TREES block of a NEXUS file		metacpan
Bio::NEXUS::UnalignedBlock	Represents an UNALIGNED block of a NEXUS file		metacpan
Bio::NEXUS::UnknownBlock	Represents a simple object for storing information unrecognized blocks by the Bio::NEXUS module.		metacpan
Bio::NEXUS::Util::Exceptions	Exception classes for Bio::NEXUS.		metacpan
Bio::NEXUS::Util::Logger	Logging for Bio::NEXUS.		metacpan
Bio::NEXUS::WeightSet	Represents column weights in alignment ( for each character)		metacpan

Provides

Name	File	View
Bio::NEXUS::Util::StackTrace	lib/Bio/NEXUS/Util/Exceptions.pm	metacpan
MyData	lib/Bio/NEXUS/Tools/NexPlotter.pm	metacpan

Other Files


Build.PL	metacpan
MANIFEST	metacpan
META.yml	metacpan
Makefile.PL	metacpan
README	metacpan
README_admin	metacpan