Bio-Tradis 1.132140
Kwalitee Issues
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- use_strict
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Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::Tradis::Analysis::Exceptions
- main_module_version_matches_dist_version
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Make sure that the main module name and version are the same of the distribution.
- meta_yml_declares_perl_version
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If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_meta_json
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Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- use_warnings
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Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::Tradis::Analysis::Exceptions
- meta_yml_has_provides
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Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
Modules
Name | Abstract | Version | View |
---|---|---|---|
Bio::Tradis | Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308 | metacpan | |
Bio::Tradis::AddTagsToSeq | Add tags to the start of the sequences | metacpan | |
Bio::Tradis::Analysis::Exceptions | metacpan | ||
Bio::Tradis::Analysis::InsertSite | metacpan | ||
Bio::Tradis::CommandLine::AddTags | Add given tags to the start of the sequence | metacpan | |
Bio::Tradis::CommandLine::CheckTags | Check for presence of tr tag in BAM file | metacpan | |
Bio::Tradis::CommandLine::FilterFastqTags | Remove given tags from the start of the sequence | metacpan | |
Bio::Tradis::CommandLine::PlotTradis | Generate plots as part of a tradis analysis | metacpan | |
Bio::Tradis::CommandLine::RemoveFastqTags | Remove given tags from the start of the sequence | metacpan | |
Bio::Tradis::CommandLine::RunMapping | Perform mapping | metacpan | |
Bio::Tradis::CommandLine::TradisAnalysis | Perform full tradis analysis | metacpan | |
Bio::Tradis::CommandLine::TradisBam | Adds tags to sequences if tags are present | metacpan | |
Bio::Tradis::DetectTags | Detect tr tags in BAM file | metacpan | |
Bio::Tradis::FilterTags | Filter tags in a fastq file | metacpan | |
Bio::Tradis::Map | Perform mapping | metacpan | |
Bio::Tradis::Parser::Bam | Very basic BAM parser. Limited functionality. | metacpan | |
Bio::Tradis::Parser::Fastq | Basic FastQ parser. | metacpan | |
Bio::Tradis::RemoveTags | Remove tags from seqs a fastq file | metacpan | |
Bio::Tradis::RunTradis | Perform all steps required for a tradis analysis | metacpan | |
Bio::Tradis::TradisPlot | Generate plots as part of a tradis analysis | metacpan |