Kwalitee Issues

has_meta_yml

Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error:

  • MANIFEST (19) does not match dist (40):
  • Missing in MANIFEST: .RData, data/nrab1000, fake2.pp, ignore.txt, out, scripts/.RData, scripts/analysis.pl, scripts/analysis2.pl, scripts/test.pp, scripts/test2.pp, scripts/test3.pp, scripts/test4.pp, scripts/test5.pp, scripts/test6.pp, scripts/test7.pp, scripts/test8.pp, scripts/test9.pp, t/10.load.t, t/10.sequence.t, t/10.sequences.t, t/11.new.t

prereq_matches_use

List all used modules in META.yml requires

Error:

  • Class::Std
  • Class::Std::Utils
  • Module::Runtime

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

no_abstract_stub_in_pod

Modify the stub. You might need to modify other stubs (for name, synopsis, license, etc) as well.

Error: BioX::SeqUtils::Promoter::Alignment,BioX::SeqUtils::Promoter::Annotations::Base

consistent_version

Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).

Error: 0.000001,0.000002

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

configure_prereq_matches_use

List all modules used in the Makefile.PL/Build.PL in META.yml configure_requires

Error:

  • Module::Build

Modules

Name Abstract Version View
BioX::SeqUtils::Promoter 0.000001 metacpan
BioX::SeqUtils::Promoter::Alignment [One line description of module's purpose here] 0.000002 metacpan
BioX::SeqUtils::Promoter::Annotations identification of promoter elements in sequence ,sequences, or alignments 0.000002 metacpan
BioX::SeqUtils::Promoter::Annotations::Base [One line description of module's purpose here] 0.000002 metacpan
BioX::SeqUtils::Promoter::Annotations::CG identification of CpG islands, CG rich regions 0.000002 metacpan
BioX::SeqUtils::Promoter::Annotations::Consensus identification core promoter elements via consensus sequences 0.000002 metacpan
BioX::SeqUtils::Promoter::Base 0.000002 metacpan
BioX::SeqUtils::Promoter::SaveTypes Types of output files to be saved 0.000002 metacpan
BioX::SeqUtils::Promoter::SaveTypes::Base 0.000002 metacpan
BioX::SeqUtils::Promoter::SaveTypes::RImage pdf output file with visually tagged promoter elements via R 0.000002 metacpan
BioX::SeqUtils::Promoter::SaveTypes::Text MSA output in text file format 0.000002 metacpan
BioX::SeqUtils::Promoter::Sequence specific sequences/motifs and colors to be associated with them 0.000002 metacpan
BioX::SeqUtils::Promoter::Sequences Sequences used in previous analysis 0.000002 metacpan

Other Files

Build.PL metacpan
Changes metacpan
MANIFEST metacpan
Makefile.PL metacpan
README metacpan