Bio-Community 0.001004
- Released by
- FANGLY
- Version
- Release Date
- 2014-02-10
- Kwalitee
- 153.12
- Core Kwalitee
- 93.75
- LINKS
Bio-Community 0.001004
Kwalitee Issues
- buildtool_not_executable
-
Change the permissions of Build.PL/Makefile.PL to not-executable.
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-Community-0.001004/lib/Bio/Community/IO/FormatGuesser.pm -- Around line 71: Non-ASCII character seen before =encoding in 'Kähäri'. Assuming UTF-8 Bio-Community-0.001004/lib/Bio/Community/IO.pm -- Around line 120: =back doesn't take any parameters, but you said =back _write_metacommunity_finish() Around line 126: =back doesn't take any parameters, but you said =back =head1 AUTHOR =back without =over Bio-Community-0.001004/lib/Bio/Community/Member.pm -- Around line 40: '=item' outside of any '=over' Bio-Community-0.001004/lib/Bio/Community/Meta/Beta.pm -- Around line 133: Non-ASCII character seen before =encoding in 'Sørensen'. Assuming UTF-8
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::Community | A biological community | 0.001004 | metacpan |
| Bio::Community::Alpha | Calculate the alpha diversity of a community | metacpan | |
| Bio::Community::IO | Read and write files that describe communities | metacpan | |
| Bio::Community::IO::Driver::biom | Driver to read and write files in the sparse BIOM format | metacpan | |
| Bio::Community::IO::Driver::dummy | Dummy driver (does nothing) | metacpan | |
| Bio::Community::IO::Driver::gaas | Driver to read and write files in the GAAS format | metacpan | |
| Bio::Community::IO::Driver::generic | Driver to read and write files in a generic tab-delimited site-by-species table format | metacpan | |
| Bio::Community::IO::Driver::qiime | Driver to read and write files in the QIIME format | metacpan | |
| Bio::Community::IO::Driver::unifrac | Driver to read and write files in the (Fast)Unifrac format | metacpan | |
| Bio::Community::IO::FormatGuesser | Determine the format used by a community file | metacpan | |
| Bio::Community::Member | The basic constituent of a biological community | metacpan | |
| Bio::Community::Meta | A metacommunity, or group of communities | metacpan | |
| Bio::Community::Meta::Beta | Beta diversity or distance separating communities | metacpan | |
| Bio::Community::Meta::Gamma | Calculate the gamma diversity of a metacommunity | metacpan | |
| Bio::Community::Role::Classified | Role for objects that have a taxonomic classification | metacpan | |
| Bio::Community::Role::Described | Role for objects that have a description | metacpan | |
| Bio::Community::Role::IO | Role for IO layer | metacpan | |
| Bio::Community::Role::Locked | Role for objects that can be locked (made read-only) | metacpan | |
| Bio::Community::Role::PRNG | Role for objects that use a pseudo-random number generator | metacpan | |
| Bio::Community::Role::Sequenced | Role for objects that have a sequence | metacpan | |
| Bio::Community::Role::Table | Role to read/write data tables and provide random access to their cells | metacpan | |
| Bio::Community::Role::Weighted | Role for objects that have a weight | metacpan | |
| Bio::Community::TaxonomyUtils | Functions for manipulating taxonomic lineages | metacpan | |
| Bio::Community::Tools::Rarefier | Normalize communities by count | metacpan | |
| Bio::Community::Tools::RepresentativeIdConverter | Convert member ID to OTU representative ID or taxonomic ID | metacpan | |
| Bio::Community::Tools::Sampler | Sample organisms according to their abundance | metacpan | |
| Bio::Community::Tools::ShrapnelCleaner | Remove low-count, low-abundance community members | metacpan | |
| Bio::Community::Tools::Summarizer | Create a summary of communities | metacpan | |
| Bio::Community::Tools::Transformer | Arbitrary transformation of member counts | metacpan | |
| Bio::Community::Types | Data type definitions | metacpan |