Bio-Genex 2.6.0 Latest
Kwalitee Issues
- has_meta_yml
-
Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.
- buildtool_not_executable
-
Change the permissions of Build.PL/Makefile.PL to not-executable.
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- prereq_matches_use
-
List all used modules in META.yml requires
Error:
- DBI
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-Genex-2.6.0/pod/Genex.pod -- Around line 215: '=item' outside of any '=over' Around line 223: '=item' outside of any '=over' Bio-Genex-2.6.0/pod/control-bundle.pl.pod -- Around line 31: You forgot a '=back' before '=head1' Bio-Genex-2.6.0/scripts/create_genex_class.pl -- Around line 1780: You can't have =items (as at line 1800) unless the first thing after the =over is an =item Around line 1912: You can't have =items (as at line 1918) unless the first thing after the =over is an =item
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- proper_libs
-
Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.
Error: AL_Spots/AL_Spots.pm, AM_FactorValues/AM_FactorValues.pm, AM_Spots/AM_Spots.pm, AM_SuspectSpots/AM_SuspectSpots.pm, ArrayLayout/ArrayLayout.pm, ArrayMeasurement/ArrayMeasurement.pm, BlastHits/BlastHits.pm, Chromosome/Chromosome.pm, Citation/Citation.pm, Contact/Contact.pm, ControlledVocab/ControlledVocab.pm, ExperimentFactors/ExperimentFactors.pm, ExperimentSet/ExperimentSet.pm, ExternalDatabase/ExternalDatabase.pm, Fkey/Fkey.pm, GenexAdmin/GenexAdmin.pm, GroupLink/GroupLink.pm, GroupSec/GroupSec.pm, HotSpots/HotSpots.pm, Protocol/Protocol.pm, SampleProtocols/SampleProtocols.pm, Scanner/Scanner.pm, Software/Software.pm, Species/Species.pm, SpotLink/SpotLink.pm, Spotter/Spotter.pm, TL_FactorValues/TL_FactorValues.pm, TreatmentLevel/TreatmentLevel.pm, Treatment_AMs/Treatment_AMs.pm, USF_ExternalDBLink/USF_ExternalDBLink.pm, UserSec/UserSec.pm, UserSequenceFeature/UserSequenceFeature.pm
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::Genex::AL_Spots, Bio::Genex::AM_FactorValues, Bio::Genex::AM_Spots, Bio::Genex::AM_SuspectSpots, Bio::Genex::ArrayLayout, Bio::Genex::ArrayMeasurement, Bio::Genex::BlastHits, Bio::Genex::Chromosome, Bio::Genex::Citation, Bio::Genex::Contact, Bio::Genex::ControlledVocab, Bio::Genex::ExperimentFactors, Bio::Genex::ExperimentSet, Bio::Genex::ExternalDatabase, Bio::Genex::Fkey, Bio::Genex::GenexAdmin, Bio::Genex::GroupLink, Bio::Genex::GroupSec, Bio::Genex::HotSpots, Bio::Genex::Protocol, Bio::Genex::SampleProtocols, Bio::Genex::Scanner, Bio::Genex::Software, Bio::Genex::Species, Bio::Genex::SpotLink, Bio::Genex::Spotter, Bio::Genex::TL_FactorValues, Bio::Genex::TreatmentLevel, Bio::Genex::Treatment_AMs, Bio::Genex::USF_ExternalDBLink, Bio::Genex::UserSec, Bio::Genex::UserSequenceFeature
- test_prereq_matches_use
-
List all modules used in the test suite in META.yml test_requires
Error:
- DBI
- XML::DOM
Modules
Name | Abstract | Version | View |
---|---|---|---|
Bio::Genex::AL_Spots | Methods for processing data from the GeneX DB table: AL_Spots | metacpan | |
Bio::Genex::AM_FactorValues | Methods for processing data from the GeneX DB linking table: AM_FactorValues | metacpan | |
Bio::Genex::AM_Spots | Methods for processing data from the GeneX DB table: AM_Spots | metacpan | |
Bio::Genex::AM_SuspectSpots | Methods for processing data from the GeneX DB linking table: AM_SuspectSpots | metacpan | |
Bio::Genex::ArrayLayout | Methods for processing data from the GeneX DB table: ArrayLayout | metacpan | |
Bio::Genex::ArrayMeasurement | Methods for processing data from the GeneX DB table: ArrayMeasurement | metacpan | |
Bio::Genex::BlastHits | Methods for processing data from the GeneX DB table: BlastHits | metacpan | |
Bio::Genex::Chromosome | Methods for processing data from the GeneX DB table: Chromosome | metacpan | |
Bio::Genex::Citation | Methods for processing data from the GeneX DB table: Citation | metacpan | |
Bio::Genex::Contact | Methods for processing data from the GeneX DB table: Contact | metacpan | |
Bio::Genex::ControlledVocab | Methods for processing data from the GeneX DB table: ControlledVocab | metacpan | |
Bio::Genex::ExperimentFactors | Methods for processing data from the GeneX DB table: ExperimentFactors | metacpan | |
Bio::Genex::ExperimentSet | Methods for processing data from the GeneX DB table: ExperimentSet | metacpan | |
Bio::Genex::ExternalDatabase | Methods for processing data from the GeneX DB table: ExternalDatabase | metacpan | |
Bio::Genex::Fkey | Perl extension for representing Database Foreign Keys | metacpan | |
Bio::Genex::GenexAdmin | Methods for processing data from the GeneX DB table: GenexAdmin | metacpan | |
Bio::Genex::GroupLink | Methods for processing data from the GeneX DB linking table: GroupLink | metacpan | |
Bio::Genex::GroupSec | Methods for processing data from the GeneX DB table: GroupSec | metacpan | |
Bio::Genex::HotSpots | Methods for processing data from the GeneX DB linking table: HotSpots | metacpan | |
Bio::Genex::Protocol | Methods for processing data from the GeneX DB table: Protocol | metacpan | |
Bio::Genex::SampleProtocols | Methods for processing data from the GeneX DB linking table: SampleProtocols | metacpan | |
Bio::Genex::Scanner | Methods for processing data from the GeneX DB table: Scanner | metacpan | |
Bio::Genex::Software | Methods for processing data from the GeneX DB table: Software | metacpan | |
Bio::Genex::Species | Methods for processing data from the GeneX DB table: Species | metacpan | |
Bio::Genex::SpotLink | Methods for processing data from the GeneX DB linking table: SpotLink | metacpan | |
Bio::Genex::Spotter | Methods for processing data from the GeneX DB table: Spotter | metacpan | |
Bio::Genex::TL_FactorValues | Methods for processing data from the GeneX DB linking table: TL_FactorValues | metacpan | |
Bio::Genex::TreatmentLevel | Methods for processing data from the GeneX DB table: TreatmentLevel | metacpan | |
Bio::Genex::Treatment_AMs | Methods for processing data from the GeneX DB linking table: Treatment_AMs | metacpan | |
Bio::Genex::USF_ExternalDBLink | Methods for processing data from the GeneX DB linking table: USF_ExternalDBLink | metacpan | |
Bio::Genex::UserSec | Methods for processing data from the GeneX DB table: UserSec | metacpan | |
Bio::Genex::UserSequenceFeature | Methods for processing data from the GeneX DB table: UserSequenceFeature | metacpan |
Provides
Name | File | View |
---|---|---|
Bio::Genex::ALS_SpotType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AL_Coating | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AL_DefaultSpotConcUnits | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AL_IdentifierCode | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AL_Medium | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AL_TechnologyType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AM_EquationType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AM_SpotMeasurementUnits | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::AM_Type | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::ContactType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::EF_MajorCategory | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::EF_MinorCategory | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::ES_QuantitySeriesType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::ES_TreatmentType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::HS_ThresholdType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::PRT_Type | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SCN_ModelDescription | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_AgeUnits | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_DevelopmentStageName | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_DevelopmentStageUnits | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_GeneticStatus | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_OrganType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_OrganismIntactness | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_PrimaryCellType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_SexMatingType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SMP_TissueType | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SPC_CellStructure | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SPC_GeneralClassification | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SPT_ModelDescription | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SW_Name | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::SW_Type | ControlledVocab/ControlledVocab.pm | metacpan |
Bio::Genex::Sample | Sample/Sample.pm | metacpan |
Bio::Genex::USF_Type | ControlledVocab/ControlledVocab.pm | metacpan |
Other Files
AL_Spots/Makefile.PL | metacpan |
AM_FactorValues/Makefile.PL | metacpan |
AM_Spots/Makefile.PL | metacpan |
AM_SuspectSpots/Makefile.PL | metacpan |
ArrayLayout/Makefile.PL | metacpan |
ArrayMeasurement/Makefile.PL | metacpan |
BlastHits/Makefile.PL | metacpan |
Changes | metacpan |
Chromosome/Makefile.PL | metacpan |
Citation/Makefile.PL | metacpan |
Contact/Makefile.PL | metacpan |
ControlledVocab/Makefile.PL | metacpan |
DBUtils/Makefile.PL | metacpan |
ExperimentFactors/Makefile.PL | metacpan |
ExperimentSet/Makefile.PL | metacpan |
ExternalDatabase/Makefile.PL | metacpan |
Fkey/Makefile.PL | metacpan |
GenexAdmin/Makefile.PL | metacpan |
GroupLink/Makefile.PL | metacpan |
GroupSec/Makefile.PL | metacpan |
HTMLUtils/Makefile.PL | metacpan |
HotSpots/Makefile.PL | metacpan |
MANIFEST | metacpan |
Makefile.PL | metacpan |
Protocol/Makefile.PL | metacpan |
README | metacpan |
Sample/Makefile.PL | metacpan |
SampleProtocols/Makefile.PL | metacpan |
Scanner/Makefile.PL | metacpan |
Software/Makefile.PL | metacpan |
Species/Makefile.PL | metacpan |
SpotLink/Makefile.PL | metacpan |
Spotter/Makefile.PL | metacpan |
TL_FactorValues/Makefile.PL | metacpan |
TreatmentLevel/Makefile.PL | metacpan |
Treatment_AMs/Makefile.PL | metacpan |
USF_ExternalDBLink/Makefile.PL | metacpan |
UserSec/Makefile.PL | metacpan |
UserSequenceFeature/Makefile.PL | metacpan |
XMLUtils/Makefile.PL | metacpan |