CPANTS

Bio-MAGE 20020902.3

Kwalitee Issues

This is not the latest release. The following issues may have already been fixed in the newer releases.

has_readme

Add a README to the distribution. It should contain a quick description of your module and how to install it.

has_meta_yml

Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.

has_human_readable_license

Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: classes

prereq_matches_use

List all used modules in META.yml requires

Error:

Bio::MAGE::XML::Handler::DocumentHandler
Tie::IxHash
XML::Xerces

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: Bio-MAGE-20020902.3/MAGE/Array/Array.pm -- Around line 130: '=item' outside of any '=over' Around line 405: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/ArrayGroup.pm -- Around line 148: '=item' outside of any '=over' Around line 443: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/ArrayManufacture.pm -- Around line 126: '=item' outside of any '=over' Around line 396: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/ArrayManufactureDeviation.pm -- Around line 105: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/FeatureDefect.pm -- Around line 109: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/Fiducial.pm -- Around line 109: '=item' outside of any '=over' Around line 349: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/ManufactureLIMS.pm -- Around line 125: '=item' outside of any '=over' Around line 370: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/ManufactureLIMSBiomaterial.pm -- Around line 109: '=item' outside of any '=over' Around line 369: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/PositionDelta.pm -- Around line 110: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Array/ZoneDefect.pm -- Around line 109: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/ArrayDesign/ArrayDesign.pm -- Around line 137: '=item' outside of any '=over' Around line 407: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/ArrayDesign/CompositeGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 351: You forgot a '=back' before '=head2' Around line 360: You can't have =items (as at line 365) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/ArrayDesign/DesignElementGroup.pm -- Around line 127: '=item' outside of any '=over' Around line 372: You forgot a '=back' before '=head2' Around line 381: You can't have =items (as at line 386) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/ArrayDesign/FeatureGroup.pm -- Around line 126: '=item' outside of any '=over' Around line 406: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/ArrayDesign/PhysicalArrayDesign.pm -- Around line 105: '=item' outside of any '=over' Around line 385: You forgot a '=back' before '=head2' Around line 394: You can't have =items (as at line 399) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/ArrayDesign/ReporterGroup.pm -- Around line 102: '=item' outside of any '=over' Around line 352: You forgot a '=back' before '=head2' Around line 361: You can't have =items (as at line 366) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/ArrayDesign/Zone.pm -- Around line 126: '=item' outside of any '=over' Around line 396: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/ArrayDesign/ZoneGroup.pm -- Around line 126: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/ArrayDesign/ZoneLayout.pm -- Around line 118: '=item' outside of any '=over' Around line 353: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/AuditAndSecurity/Audit.pm -- Around line 110: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/AuditAndSecurity/Contact.pm -- Around line 140: '=item' outside of any '=over' Around line 410: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/AuditAndSecurity/Organization.pm -- Around line 101: '=item' outside of any '=over' Around line 376: You forgot a '=back' before '=head2' Around line 385: You can't have =items (as at line 390) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/AuditAndSecurity/Person.pm -- Around line 114: '=item' outside of any '=over' Around line 404: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/AuditAndSecurity/Security.pm -- Around line 105: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Around line 359: You can't have =items (as at line 364) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/AuditAndSecurity/SecurityGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BQS/BibliographicReference.pm -- Around line 143: '=item' outside of any '=over' Around line 423: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Base.pm -- Around line 43: '=item' outside of any '=over' Around line 203: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssay/BioAssay.pm -- Around line 128: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Around line 382: You can't have =items (as at line 387) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/BioAssayCreation.pm -- Around line 120: '=item' outside of any '=over' Around line 375: You forgot a '=back' before '=head2' Around line 384: You can't have =items (as at line 389) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/BioAssayTreatment.pm -- Around line 116: '=item' outside of any '=over' Around line 366: You forgot a '=back' before '=head2' Around line 375: You can't have =items (as at line 380) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/Channel.pm -- Around line 101: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/DerivedBioAssay.pm -- Around line 109: '=item' outside of any '=over' Around line 369: You forgot a '=back' before '=head2' Around line 378: You can't have =items (as at line 383) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/FeatureExtraction.pm -- Around line 105: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Around line 364: You can't have =items (as at line 369) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/Hybridization.pm -- Around line 94: '=item' outside of any '=over' Around line 349: You forgot a '=back' before '=head2' Around line 358: You can't have =items (as at line 363) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/Image.pm -- Around line 111: '=item' outside of any '=over' Around line 361: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssay/ImageAcquisition.pm -- Around line 101: '=item' outside of any '=over' Around line 356: You forgot a '=back' before '=head2' Around line 365: You can't have =items (as at line 370) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/MeasuredBioAssay.pm -- Around line 105: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssay/PhysicalBioAssay.pm -- Around line 109: '=item' outside of any '=over' Around line 369: You forgot a '=back' before '=head2' Around line 378: You can't have =items (as at line 383) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/BioAssayData.pm -- Around line 133: '=item' outside of any '=over' Around line 393: You forgot a '=back' before '=head2' Around line 402: You can't have =items (as at line 407) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/BioAssayDatum.pm -- Around line 114: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssayData/BioAssayDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/BioAssayMap.pm -- Around line 105: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Around line 364: You can't have =items (as at line 369) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/BioAssayMapping.pm -- Around line 101: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssayData/BioDataCube.pm -- Around line 105: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssayData/BioDataTuples.pm -- Around line 101: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssayData/BioDataValues.pm -- Around line 117: '=item' outside of any '=over' Around line 327: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssayData/CompositeSequenceDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/DerivedBioAssayData.pm -- Around line 101: '=item' outside of any '=over' Around line 366: You forgot a '=back' before '=head2' Around line 375: You can't have =items (as at line 380) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/DesignElementDimension.pm -- Around line 120: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Around line 364: You can't have =items (as at line 369) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/DesignElementMap.pm -- Around line 120: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/DesignElementMapping.pm -- Around line 101: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssayData/FeatureDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/MeasuredBioAssayData.pm -- Around line 94: '=item' outside of any '=over' Around line 354: You forgot a '=back' before '=head2' Around line 363: You can't have =items (as at line 368) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/QuantitationTypeDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/QuantitationTypeMap.pm -- Around line 105: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Around line 364: You can't have =items (as at line 369) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/QuantitationTypeMapping.pm -- Around line 101: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioAssayData/ReporterDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioAssayData/Transformation.pm -- Around line 117: '=item' outside of any '=over' Around line 382: You forgot a '=back' before '=head2' Around line 391: You can't have =items (as at line 396) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioEvent/BioEvent.pm -- Around line 133: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Around line 382: You can't have =items (as at line 387) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioEvent/Map.pm -- Around line 120: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioMaterial/BioMaterial.pm -- Around line 133: '=item' outside of any '=over' Around line 388: You forgot a '=back' before '=head2' Around line 397: You can't have =items (as at line 402) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioMaterial/BioMaterialMeasurement.pm -- Around line 105: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioMaterial/BioSample.pm -- Around line 101: '=item' outside of any '=over' Around line 361: You forgot a '=back' before '=head2' Around line 370: You can't have =items (as at line 375) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioMaterial/BioSource.pm -- Around line 101: '=item' outside of any '=over' Around line 361: You forgot a '=back' before '=head2' Around line 370: You can't have =items (as at line 375) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioMaterial/Compound.pm -- Around line 114: '=item' outside of any '=over' Around line 369: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioMaterial/CompoundMeasurement.pm -- Around line 105: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioMaterial/LabeledExtract.pm -- Around line 101: '=item' outside of any '=over' Around line 361: You forgot a '=back' before '=head2' Around line 370: You can't have =items (as at line 375) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/BioMaterial/Treatment.pm -- Around line 118: '=item' outside of any '=over' Around line 383: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioSequence/BioSequence.pm -- Around line 138: '=item' outside of any '=over' Around line 423: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioSequence/SeqFeature.pm -- Around line 106: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioSequence/SeqFeatureLocation.pm -- Around line 110: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/BioSequence/SequencePosition.pm -- Around line 119: '=item' outside of any '=over' Around line 339: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Describable.pm -- Around line 154: '=item' outside of any '=over' Around line 379: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Description/Database.pm -- Around line 110: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Description/DatabaseEntry.pm -- Around line 118: '=item' outside of any '=over' Around line 353: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Description/Description.pm -- Around line 122: '=item' outside of any '=over' Around line 377: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Description/ExternalReference.pm -- Around line 113: '=item' outside of any '=over' Around line 343: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Description/OntologyEntry.pm -- Around line 118: '=item' outside of any '=over' Around line 353: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/DesignElement/CompositeCompositeMap.pm -- Around line 105: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Around line 364: You can't have =items (as at line 369) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/CompositePosition.pm -- Around line 105: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Around line 344: You can't have =items (as at line 349) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/CompositeSequence.pm -- Around line 110: '=item' outside of any '=over' Around line 365: You forgot a '=back' before '=head2' Around line 374: You can't have =items (as at line 379) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/DesignElement.pm -- Around line 124: '=item' outside of any '=over' Around line 364: You forgot a '=back' before '=head2' Around line 373: You can't have =items (as at line 378) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/Feature.pm -- Around line 122: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/FeatureInformation.pm -- Around line 105: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/DesignElement/FeatureLocation.pm -- Around line 105: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/DesignElement/FeatureReporterMap.pm -- Around line 105: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Around line 364: You can't have =items (as at line 369) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/MismatchInformation.pm -- Around line 109: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/DesignElement/Position.pm -- Around line 110: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/DesignElement/Reporter.pm -- Around line 115: '=item' outside of any '=over' Around line 375: You forgot a '=back' before '=head2' Around line 384: You can't have =items (as at line 389) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/ReporterCompositeMap.pm -- Around line 105: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Around line 364: You can't have =items (as at line 369) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/DesignElement/ReporterPosition.pm -- Around line 105: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Around line 344: You can't have =items (as at line 349) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/Experiment/Experiment.pm -- Around line 117: '=item' outside of any '=over' Around line 377: You forgot a '=back' before '=head2' Around line 386: You can't have =items (as at line 391) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/Experiment/ExperimentDesign.pm -- Around line 121: '=item' outside of any '=over' Around line 376: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Experiment/ExperimentalFactor.pm -- Around line 109: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/Experiment/FactorValue.pm -- Around line 109: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/Extendable.pm -- Around line 184: '=item' outside of any '=over' Around line 394: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm -- Around line 105: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Around line 359: You can't have =items (as at line 364) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/HigherLevelAnalysis/Node.pm -- Around line 109: '=item' outside of any '=over' Around line 349: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/HigherLevelAnalysis/NodeContents.pm -- Around line 109: '=item' outside of any '=over' Around line 349: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/HigherLevelAnalysis/NodeValue.pm -- Around line 118: '=item' outside of any '=over' Around line 353: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Identifiable.pm -- Around line 205: '=item' outside of any '=over' Around line 440: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/ConcentrationUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/DistanceUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/MassUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/Measurement.pm -- Around line 118: '=item' outside of any '=over' Around line 353: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/QuantityUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/TemperatureUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/TimeUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/Unit.pm -- Around line 136: '=item' outside of any '=over' Around line 351: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Measurement/VolumeUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/NameValueType.pm -- Around line 99: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/Hardware.pm -- Around line 118: '=item' outside of any '=over' Around line 388: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/HardwareApplication.pm -- Around line 106: '=item' outside of any '=over' Around line 346: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/Parameter.pm -- Around line 105: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Around line 359: You can't have =items (as at line 364) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/Protocol/ParameterValue.pm -- Around line 106: '=item' outside of any '=over' Around line 326: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/Parameterizable.pm -- Around line 128: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/ParameterizableApplication.pm -- Around line 124: '=item' outside of any '=over' Around line 354: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/Protocol.pm -- Around line 118: '=item' outside of any '=over' Around line 388: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/ProtocolApplication.pm -- Around line 118: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/Protocol/Software.pm -- Around line 113: '=item' outside of any '=over' Around line 378: You forgot a '=back' before '=head2' Around line 387: You can't have =items (as at line 392) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/Protocol/SoftwareApplication.pm -- Around line 110: '=item' outside of any '=over' Around line 355: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/QuantitationType/ConfidenceIndicator.pm -- Around line 124: '=item' outside of any '=over' Around line 394: You forgot a '=back' before '=head2' Around line 403: You can't have =items (as at line 408) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/DerivedSignal.pm -- Around line 94: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/Error.pm -- Around line 94: '=item' outside of any '=over' Around line 364: You forgot a '=back' before '=head2' Around line 373: You can't have =items (as at line 378) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/ExpectedValue.pm -- Around line 94: '=item' outside of any '=over' Around line 364: You forgot a '=back' before '=head2' Around line 373: You can't have =items (as at line 378) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/Failed.pm -- Around line 94: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/MeasuredSignal.pm -- Around line 94: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/PValue.pm -- Around line 94: '=item' outside of any '=over' Around line 364: You forgot a '=back' before '=head2' Around line 373: You can't have =items (as at line 378) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/PresentAbsent.pm -- Around line 94: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/QuantitationType.pm -- Around line 138: '=item' outside of any '=over' Around line 403: You forgot a '=back' before '=head2' Bio-MAGE-20020902.3/MAGE/QuantitationType/Ratio.pm -- Around line 94: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/SpecializedQuantitationType.pm -- Around line 94: '=item' outside of any '=over' Around line 359: You forgot a '=back' before '=head2' Around line 368: You can't have =items (as at line 373) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/QuantitationType/StandardQuantitationType.pm -- Around line 129: '=item' outside of any '=over' Around line 394: You forgot a '=back' before '=head2' Around line 403: You can't have =items (as at line 408) unless the first thing after the =over is an =item Bio-MAGE-20020902.3/MAGE/SQLUtils.pm -- Around line 249: '=item' outside of any '=over' =over without closing =back Bio-MAGE-20020902.3/MAGE/XML/Handler.pm -- Around line 143: '=item' outside of any '=over' =over without closing =back Bio-MAGE-20020902.3/MAGE/XML/Reader.pm -- Around line 169: You forgot a '=back' before '=head2' Around line 187: '=item' outside of any '=over' Bio-MAGE-20020902.3/MAGE/XML/Writer.pm -- Around line 146: '=item' outside of any '=over' Around line 637: You forgot a '=back' before '=head1' Around line 641: =over without closing =back

7 Extra Issues

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: MAGE.pm, MAGE/Array.pm, MAGE/Array/Array.pm, MAGE/Array/ArrayGroup.pm, MAGE/Array/ArrayManufacture.pm, MAGE/Array/ArrayManufactureDeviation.pm, MAGE/Array/FeatureDefect.pm, MAGE/Array/Fiducial.pm, MAGE/Array/ManufactureLIMS.pm, MAGE/Array/ManufactureLIMSBiomaterial.pm, MAGE/Array/PositionDelta.pm, MAGE/Array/ZoneDefect.pm, MAGE/ArrayDesign.pm, MAGE/ArrayDesign/ArrayDesign.pm, MAGE/ArrayDesign/CompositeGroup.pm, MAGE/ArrayDesign/DesignElementGroup.pm, MAGE/ArrayDesign/FeatureGroup.pm, MAGE/ArrayDesign/PhysicalArrayDesign.pm, MAGE/ArrayDesign/ReporterGroup.pm, MAGE/ArrayDesign/Zone.pm, MAGE/ArrayDesign/ZoneGroup.pm, MAGE/ArrayDesign/ZoneLayout.pm, MAGE/Association.pm, MAGE/AuditAndSecurity.pm, MAGE/AuditAndSecurity/Audit.pm, MAGE/AuditAndSecurity/Contact.pm, MAGE/AuditAndSecurity/Organization.pm, MAGE/AuditAndSecurity/Person.pm, MAGE/AuditAndSecurity/Security.pm, MAGE/AuditAndSecurity/SecurityGroup.pm, MAGE/BQS.pm, MAGE/BQS/BibliographicReference.pm, MAGE/Base.pm, MAGE/BioAssay.pm, MAGE/BioAssay/BioAssay.pm, MAGE/BioAssay/BioAssayCreation.pm, MAGE/BioAssay/BioAssayTreatment.pm, MAGE/BioAssay/Channel.pm, MAGE/BioAssay/DerivedBioAssay.pm, MAGE/BioAssay/FeatureExtraction.pm, MAGE/BioAssay/Hybridization.pm, MAGE/BioAssay/Image.pm, MAGE/BioAssay/ImageAcquisition.pm, MAGE/BioAssay/MeasuredBioAssay.pm, MAGE/BioAssay/PhysicalBioAssay.pm, MAGE/BioAssayData.pm, MAGE/BioAssayData/BioAssayData.pm, MAGE/BioAssayData/BioAssayDatum.pm, MAGE/BioAssayData/BioAssayDimension.pm, MAGE/BioAssayData/BioAssayMap.pm, MAGE/BioAssayData/BioAssayMapping.pm, MAGE/BioAssayData/BioDataCube.pm, MAGE/BioAssayData/BioDataTuples.pm, MAGE/BioAssayData/BioDataValues.pm, MAGE/BioAssayData/CompositeSequenceDimension.pm, MAGE/BioAssayData/DerivedBioAssayData.pm, MAGE/BioAssayData/DesignElementDimension.pm, MAGE/BioAssayData/DesignElementMap.pm, MAGE/BioAssayData/DesignElementMapping.pm, MAGE/BioAssayData/FeatureDimension.pm, MAGE/BioAssayData/MeasuredBioAssayData.pm, MAGE/BioAssayData/QuantitationTypeDimension.pm, MAGE/BioAssayData/QuantitationTypeMap.pm, MAGE/BioAssayData/QuantitationTypeMapping.pm, MAGE/BioAssayData/ReporterDimension.pm, MAGE/BioAssayData/Transformation.pm, MAGE/BioEvent.pm, MAGE/BioEvent/BioEvent.pm, MAGE/BioEvent/Map.pm, MAGE/BioMaterial.pm, MAGE/BioMaterial/BioMaterial.pm, MAGE/BioMaterial/BioMaterialMeasurement.pm, MAGE/BioMaterial/BioSample.pm, MAGE/BioMaterial/BioSource.pm, MAGE/BioMaterial/Compound.pm, MAGE/BioMaterial/CompoundMeasurement.pm, MAGE/BioMaterial/LabeledExtract.pm, MAGE/BioMaterial/Treatment.pm, MAGE/BioSequence.pm, MAGE/BioSequence/BioSequence.pm, MAGE/BioSequence/SeqFeature.pm, MAGE/BioSequence/SeqFeatureLocation.pm, MAGE/BioSequence/SequencePosition.pm, MAGE/Describable.pm, MAGE/Description.pm, MAGE/Description/Database.pm, MAGE/Description/DatabaseEntry.pm, MAGE/Description/Description.pm, MAGE/Description/ExternalReference.pm, MAGE/Description/OntologyEntry.pm, MAGE/DesignElement.pm, MAGE/DesignElement/CompositeCompositeMap.pm, MAGE/DesignElement/CompositePosition.pm, MAGE/DesignElement/CompositeSequence.pm, MAGE/DesignElement/DesignElement.pm, MAGE/DesignElement/Feature.pm, MAGE/DesignElement/FeatureInformation.pm, MAGE/DesignElement/FeatureLocation.pm, MAGE/DesignElement/FeatureReporterMap.pm, MAGE/DesignElement/MismatchInformation.pm, MAGE/DesignElement/Position.pm, MAGE/DesignElement/Reporter.pm, MAGE/DesignElement/ReporterCompositeMap.pm, MAGE/DesignElement/ReporterPosition.pm, MAGE/XML/Handler/DocumentHandler.pm, MAGE/Experiment.pm, MAGE/Experiment/Experiment.pm, MAGE/Experiment/ExperimentDesign.pm, MAGE/Experiment/ExperimentalFactor.pm, MAGE/Experiment/FactorValue.pm, MAGE/Extendable.pm, MAGE/HigherLevelAnalysis.pm, MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm, MAGE/HigherLevelAnalysis/Node.pm, MAGE/HigherLevelAnalysis/NodeContents.pm, MAGE/HigherLevelAnalysis/NodeValue.pm, MAGE/Identifiable.pm, MAGE/Measurement.pm, MAGE/Measurement/ConcentrationUnit.pm, MAGE/Measurement/DistanceUnit.pm, MAGE/Measurement/MassUnit.pm, MAGE/Measurement/Measurement.pm, MAGE/Measurement/QuantityUnit.pm, MAGE/Measurement/TemperatureUnit.pm, MAGE/Measurement/TimeUnit.pm, MAGE/Measurement/Unit.pm, MAGE/Measurement/VolumeUnit.pm, MAGE/NameValueType.pm, MAGE/Protocol.pm, MAGE/Protocol/Hardware.pm, MAGE/Protocol/HardwareApplication.pm, MAGE/Protocol/Parameter.pm, MAGE/Protocol/ParameterValue.pm, MAGE/Protocol/Parameterizable.pm, MAGE/Protocol/ParameterizableApplication.pm, MAGE/Protocol/Protocol.pm, MAGE/Protocol/ProtocolApplication.pm, MAGE/Protocol/Software.pm, MAGE/Protocol/SoftwareApplication.pm, MAGE/QuantitationType.pm, MAGE/QuantitationType/ConfidenceIndicator.pm, MAGE/QuantitationType/DerivedSignal.pm, MAGE/QuantitationType/Error.pm, MAGE/QuantitationType/ExpectedValue.pm, MAGE/QuantitationType/Failed.pm, MAGE/QuantitationType/MeasuredSignal.pm, MAGE/QuantitationType/PValue.pm, MAGE/QuantitationType/PresentAbsent.pm, MAGE/QuantitationType/QuantitationType.pm, MAGE/QuantitationType/Ratio.pm, MAGE/QuantitationType/SpecializedQuantitationType.pm, MAGE/QuantitationType/StandardQuantitationType.pm, MAGE/SQLUtils.pm, MAGE/XML/Handler.pm, MAGE/XML/Handler/ContentHandler.pm, MAGE/XML/Handler/ObjectHandler/SQL.pm, MAGE/XML/Handler/ObjectHandlerI.pm, MAGE/XML/Reader.pm, MAGE/XML/Writer.pm, MAGE/XMLUtils.pm, classes.pm

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::MAGE, Bio::MAGE::Array, Bio::MAGE::Array::Array, Bio::MAGE::Array::ArrayGroup, Bio::MAGE::Array::ArrayManufacture, Bio::MAGE::Array::ArrayManufactureDeviation, Bio::MAGE::Array::FeatureDefect, Bio::MAGE::Array::Fiducial, Bio::MAGE::Array::ManufactureLIMS, Bio::MAGE::Array::ManufactureLIMSBiomaterial, Bio::MAGE::Array::PositionDelta, Bio::MAGE::Array::ZoneDefect, Bio::MAGE::ArrayDesign, Bio::MAGE::ArrayDesign::ArrayDesign, Bio::MAGE::ArrayDesign::CompositeGroup, Bio::MAGE::ArrayDesign::DesignElementGroup, Bio::MAGE::ArrayDesign::FeatureGroup, Bio::MAGE::ArrayDesign::PhysicalArrayDesign, Bio::MAGE::ArrayDesign::ReporterGroup, Bio::MAGE::ArrayDesign::Zone, Bio::MAGE::ArrayDesign::ZoneGroup, Bio::MAGE::ArrayDesign::ZoneLayout, Bio::MAGE::Association, Bio::MAGE::AuditAndSecurity, Bio::MAGE::AuditAndSecurity::Audit, Bio::MAGE::AuditAndSecurity::Contact, Bio::MAGE::AuditAndSecurity::Organization, Bio::MAGE::AuditAndSecurity::Person, Bio::MAGE::AuditAndSecurity::Security, Bio::MAGE::AuditAndSecurity::SecurityGroup, Bio::MAGE::BQS, Bio::MAGE::BQS::BibliographicReference, Bio::MAGE::Base, Bio::MAGE::BioAssay, Bio::MAGE::BioAssay::BioAssay, Bio::MAGE::BioAssay::BioAssayCreation, Bio::MAGE::BioAssay::BioAssayTreatment, Bio::MAGE::BioAssay::Channel, Bio::MAGE::BioAssay::DerivedBioAssay, Bio::MAGE::BioAssay::FeatureExtraction, Bio::MAGE::BioAssay::Hybridization, Bio::MAGE::BioAssay::Image, Bio::MAGE::BioAssay::ImageAcquisition, Bio::MAGE::BioAssay::MeasuredBioAssay, Bio::MAGE::BioAssay::PhysicalBioAssay, Bio::MAGE::BioAssayData, Bio::MAGE::BioAssayData::BioAssayData, Bio::MAGE::BioAssayData::BioAssayDatum, Bio::MAGE::BioAssayData::BioAssayDimension, Bio::MAGE::BioAssayData::BioAssayMap, Bio::MAGE::BioAssayData::BioAssayMapping, Bio::MAGE::BioAssayData::BioDataCube, Bio::MAGE::BioAssayData::BioDataTuples, Bio::MAGE::BioAssayData::BioDataValues, Bio::MAGE::BioAssayData::CompositeSequenceDimension, Bio::MAGE::BioAssayData::DerivedBioAssayData, Bio::MAGE::BioAssayData::DesignElementDimension, Bio::MAGE::BioAssayData::DesignElementMap, Bio::MAGE::BioAssayData::DesignElementMapping, Bio::MAGE::BioAssayData::FeatureDimension, Bio::MAGE::BioAssayData::MeasuredBioAssayData, Bio::MAGE::BioAssayData::QuantitationTypeDimension, Bio::MAGE::BioAssayData::QuantitationTypeMap, Bio::MAGE::BioAssayData::QuantitationTypeMapping, Bio::MAGE::BioAssayData::ReporterDimension, Bio::MAGE::BioAssayData::Transformation, Bio::MAGE::BioEvent, Bio::MAGE::BioEvent::BioEvent, Bio::MAGE::BioEvent::Map, Bio::MAGE::BioMaterial, Bio::MAGE::BioMaterial::BioMaterial, Bio::MAGE::BioMaterial::BioMaterialMeasurement, Bio::MAGE::BioMaterial::BioSample, Bio::MAGE::BioMaterial::BioSource, Bio::MAGE::BioMaterial::Compound, Bio::MAGE::BioMaterial::CompoundMeasurement, Bio::MAGE::BioMaterial::LabeledExtract, Bio::MAGE::BioMaterial::Treatment, Bio::MAGE::BioSequence, Bio::MAGE::BioSequence::BioSequence, Bio::MAGE::BioSequence::SeqFeature, Bio::MAGE::BioSequence::SeqFeatureLocation, Bio::MAGE::BioSequence::SequencePosition, Bio::MAGE::Describable, Bio::MAGE::Description, Bio::MAGE::Description::Database, Bio::MAGE::Description::DatabaseEntry, Bio::MAGE::Description::Description, Bio::MAGE::Description::ExternalReference, Bio::MAGE::Description::OntologyEntry, Bio::MAGE::DesignElement, Bio::MAGE::DesignElement::CompositeCompositeMap, Bio::MAGE::DesignElement::CompositePosition, Bio::MAGE::DesignElement::CompositeSequence, Bio::MAGE::DesignElement::DesignElement, Bio::MAGE::DesignElement::Feature, Bio::MAGE::DesignElement::FeatureInformation, Bio::MAGE::DesignElement::FeatureLocation, Bio::MAGE::DesignElement::FeatureReporterMap, Bio::MAGE::DesignElement::MismatchInformation, Bio::MAGE::DesignElement::Position, Bio::MAGE::DesignElement::Reporter, Bio::MAGE::DesignElement::ReporterCompositeMap, Bio::MAGE::DesignElement::ReporterPosition, Bio::MAGE::DocumentHandler, Bio::MAGE::Experiment, Bio::MAGE::Experiment::Experiment, Bio::MAGE::Experiment::ExperimentDesign, Bio::MAGE::Experiment::ExperimentalFactor, Bio::MAGE::Experiment::FactorValue, Bio::MAGE::Extendable, Bio::MAGE::HigherLevelAnalysis, Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster, Bio::MAGE::HigherLevelAnalysis::Node, Bio::MAGE::HigherLevelAnalysis::NodeContents, Bio::MAGE::HigherLevelAnalysis::NodeValue, Bio::MAGE::Identifiable, Bio::MAGE::Measurement, Bio::MAGE::Measurement::ConcentrationUnit, Bio::MAGE::Measurement::DistanceUnit, Bio::MAGE::Measurement::MassUnit, Bio::MAGE::Measurement::Measurement, Bio::MAGE::Measurement::QuantityUnit, Bio::MAGE::Measurement::TemperatureUnit, Bio::MAGE::Measurement::TimeUnit, Bio::MAGE::Measurement::Unit, Bio::MAGE::Measurement::VolumeUnit, Bio::MAGE::NameValueType, Bio::MAGE::Protocol, Bio::MAGE::Protocol::Hardware, Bio::MAGE::Protocol::HardwareApplication, Bio::MAGE::Protocol::Parameter, Bio::MAGE::Protocol::ParameterValue, Bio::MAGE::Protocol::Parameterizable, Bio::MAGE::Protocol::ParameterizableApplication, Bio::MAGE::Protocol::Protocol, Bio::MAGE::Protocol::ProtocolApplication, Bio::MAGE::Protocol::Software, Bio::MAGE::Protocol::SoftwareApplication, Bio::MAGE::QuantitationType, Bio::MAGE::QuantitationType::ConfidenceIndicator, Bio::MAGE::QuantitationType::DerivedSignal, Bio::MAGE::QuantitationType::Error, Bio::MAGE::QuantitationType::ExpectedValue, Bio::MAGE::QuantitationType::Failed, Bio::MAGE::QuantitationType::MeasuredSignal, Bio::MAGE::QuantitationType::PValue, Bio::MAGE::QuantitationType::PresentAbsent, Bio::MAGE::QuantitationType::QuantitationType, Bio::MAGE::QuantitationType::Ratio, Bio::MAGE::QuantitationType::SpecializedQuantitationType, Bio::MAGE::QuantitationType::StandardQuantitationType, Bio::MAGE::SQLWriter, Bio::MAGE::XML::Handler, Bio::MAGE::XML::Handler::ContentHandler, Bio::MAGE::XML::Handler::ObjectHandler::SQL, Bio::MAGE::XML::Handler::ObjectHandlerI, Bio::MAGE::XML::Reader, Bio::MAGE::XML::Writer, Bio::MAGE::XMLUtils, classes

no_invalid_versions

Fix the version numbers so that version::is_lax($version) returns true.

Error:

MAGE/Array.pm: HASH(0x55c8d0f5b418)
MAGE/Array/Array.pm: HASH(0x55c8d1088ef0)
MAGE/Array/ArrayGroup.pm: HASH(0x55c8d24e0948)
MAGE/Array/ArrayManufacture.pm: HASH(0x55c8d14189a0)
MAGE/Array/ArrayManufactureDeviation.pm: HASH(0x55c8d0e4bc28)
MAGE/Array/FeatureDefect.pm: HASH(0x55c8d0f72d08)
MAGE/Array/Fiducial.pm: HASH(0x55c8d0fa0618)
MAGE/Array/ManufactureLIMS.pm: HASH(0x55c8d14dc0a8)
MAGE/Array/ManufactureLIMSBiomaterial.pm: HASH(0x55c8d13df278)
MAGE/Array/PositionDelta.pm: HASH(0x55c8d0e4b850)
MAGE/Array/ZoneDefect.pm: HASH(0x55c8d052ec20)
MAGE/ArrayDesign.pm: HASH(0x55c8d0e49b80)
MAGE/ArrayDesign/ArrayDesign.pm: HASH(0x55c8d15a49a8)
MAGE/ArrayDesign/CompositeGroup.pm: HASH(0x55c8d162b400)
MAGE/ArrayDesign/DesignElementGroup.pm: HASH(0x55c8d12b8200)
MAGE/ArrayDesign/FeatureGroup.pm: HASH(0x55c8d1621540)
MAGE/ArrayDesign/PhysicalArrayDesign.pm: HASH(0x55c8d1418550)
MAGE/ArrayDesign/ReporterGroup.pm: HASH(0x55c8d127a298)
MAGE/ArrayDesign/Zone.pm: HASH(0x55c8d105c6b0)
MAGE/ArrayDesign/ZoneGroup.pm: HASH(0x55c8d1630f40)
MAGE/ArrayDesign/ZoneLayout.pm: HASH(0x55c8d0535fc0)
MAGE/Association.pm: HASH(0x55c8d1052c78)
MAGE/AuditAndSecurity.pm: HASH(0x55c8d0fb32f0)
MAGE/AuditAndSecurity/Audit.pm: HASH(0x55c8d127a358)
MAGE/AuditAndSecurity/Contact.pm: HASH(0x55c8d16714b0)
MAGE/AuditAndSecurity/Organization.pm: HASH(0x55c8d0fa9678)
MAGE/AuditAndSecurity/Person.pm: HASH(0x55c8cf7542b0)
MAGE/AuditAndSecurity/Security.pm: HASH(0x55c8d106b278)
MAGE/AuditAndSecurity/SecurityGroup.pm: HASH(0x55c8d3102698)
MAGE/BQS.pm: HASH(0x55c8d1648f50)
MAGE/BQS/BibliographicReference.pm: HASH(0x55c8d13c6b78)
MAGE/Base.pm: HASH(0x55c8cf7563b0)
MAGE/BioAssay.pm: HASH(0x55c8d1289388)
MAGE/BioAssay/BioAssay.pm: HASH(0x55c8d0f25638)
MAGE/BioAssay/BioAssayCreation.pm: HASH(0x55c8d1451b98)
MAGE/BioAssay/BioAssayTreatment.pm: HASH(0x55c8d049fa80)
MAGE/BioAssay/Channel.pm: HASH(0x55c8d1669008)
MAGE/BioAssay/DerivedBioAssay.pm: HASH(0x55c8d0e2d470)
MAGE/BioAssay/FeatureExtraction.pm: HASH(0x55c8d12edcb0)
MAGE/BioAssay/Hybridization.pm: HASH(0x55c8d14a38c0)
MAGE/BioAssay/Image.pm: HASH(0x55c8d11c30a8)
MAGE/BioAssay/ImageAcquisition.pm: HASH(0x55c8d0efdb28)
MAGE/BioAssay/MeasuredBioAssay.pm: HASH(0x55c8d161bc20)
MAGE/BioAssay/PhysicalBioAssay.pm: HASH(0x55c8d0eeb570)
MAGE/BioAssayData.pm: HASH(0x55c8d145f130)
MAGE/BioAssayData/BioAssayData.pm: HASH(0x55c8d2cb43a0)
MAGE/BioAssayData/BioAssayDatum.pm: HASH(0x55c8d1305a20)
MAGE/BioAssayData/BioAssayDimension.pm: HASH(0x55c8d1643bc8)
MAGE/BioAssayData/BioAssayMap.pm: HASH(0x55c8d0f8ac18)
MAGE/BioAssayData/BioAssayMapping.pm: HASH(0x55c8d13df230)
MAGE/BioAssayData/BioDataCube.pm: HASH(0x55c8d2cca068)
MAGE/BioAssayData/BioDataTuples.pm: HASH(0x55c8d0f25668)
MAGE/BioAssayData/BioDataValues.pm: HASH(0x55c8d163a2b0)
MAGE/BioAssayData/CompositeSequenceDimension.pm: HASH(0x55c8d127a2c8)
MAGE/BioAssayData/DerivedBioAssayData.pm: HASH(0x55c8cf7227d8)
MAGE/BioAssayData/DesignElementDimension.pm: HASH(0x55c8d102cad8)
MAGE/BioAssayData/DesignElementMap.pm: HASH(0x55c8d105c068)
MAGE/BioAssayData/DesignElementMapping.pm: HASH(0x55c8d117bcb0)
MAGE/BioAssayData/FeatureDimension.pm: HASH(0x55c8d1116660)
MAGE/BioAssayData/MeasuredBioAssayData.pm: HASH(0x55c8d0f29a18)
MAGE/BioAssayData/QuantitationTypeDimension.pm: HASH(0x55c8d112e560)
MAGE/BioAssayData/QuantitationTypeMap.pm: HASH(0x55c8d13deb10)
MAGE/BioAssayData/QuantitationTypeMapping.pm: HASH(0x55c8d1353ea0)
MAGE/BioAssayData/ReporterDimension.pm: HASH(0x55c8d1413ff0)
MAGE/BioAssayData/Transformation.pm: HASH(0x55c8d1116630)
MAGE/BioEvent.pm: HASH(0x55c8d0e2de60)
MAGE/BioEvent/BioEvent.pm: HASH(0x55c8d13afa18)
MAGE/BioEvent/Map.pm: HASH(0x55c8d15dd280)
MAGE/BioMaterial.pm: HASH(0x55c8d12452d0)
MAGE/BioMaterial/BioMaterial.pm: HASH(0x55c8d1116618)
MAGE/BioMaterial/BioMaterialMeasurement.pm: HASH(0x55c8d0efd5e8)
MAGE/BioMaterial/BioSample.pm: HASH(0x55c8d11f9150)
MAGE/BioMaterial/BioSource.pm: HASH(0x55c8d12de808)
MAGE/BioMaterial/Compound.pm: HASH(0x55c8d147c7d8)
MAGE/BioMaterial/CompoundMeasurement.pm: HASH(0x55c8d16435c8)
MAGE/BioMaterial/LabeledExtract.pm: HASH(0x55c8d15f8c28)
MAGE/BioMaterial/Treatment.pm: HASH(0x55c8d30a9058)
MAGE/BioSequence.pm: HASH(0x55c8ceeb8a90)
MAGE/BioSequence/BioSequence.pm: HASH(0x55c8d163a058)
MAGE/BioSequence/SeqFeature.pm: HASH(0x55c8d12e4280)
MAGE/BioSequence/SeqFeatureLocation.pm: HASH(0x55c8d1652348)
MAGE/BioSequence/SequencePosition.pm: HASH(0x55c8d1146190)
MAGE/Describable.pm: HASH(0x55c8d12cc118)
MAGE/Description.pm: HASH(0x55c8d115d648)
MAGE/Description/Database.pm: HASH(0x55c8d0fa0558)
MAGE/Description/DatabaseEntry.pm: HASH(0x55c8d2cc9f60)
MAGE/Description/Description.pm: HASH(0x55c8d0f41840)
MAGE/Description/ExternalReference.pm: HASH(0x55c8d11f8808)
MAGE/Description/OntologyEntry.pm: HASH(0x55c8d0333f60)
MAGE/DesignElement.pm: HASH(0x55c8d14c3da8)
MAGE/DesignElement/CompositeCompositeMap.pm: HASH(0x55c8d052cf58)
MAGE/DesignElement/CompositePosition.pm: HASH(0x55c8d11556f8)
MAGE/DesignElement/CompositeSequence.pm: HASH(0x55c8d11d17d0)
MAGE/DesignElement/DesignElement.pm: HASH(0x55c8d1163d10)
MAGE/DesignElement/Feature.pm: HASH(0x55c8d10f9380)
MAGE/DesignElement/FeatureInformation.pm: HASH(0x55c8d162b1f0)
MAGE/DesignElement/FeatureLocation.pm: HASH(0x55c8d1456b18)
MAGE/DesignElement/FeatureReporterMap.pm: HASH(0x55c8d105c758)
MAGE/DesignElement/MismatchInformation.pm: HASH(0x55c8d113c2e8)
MAGE/DesignElement/Position.pm: HASH(0x55c8d0fddc28)
MAGE/DesignElement/Reporter.pm: HASH(0x55c8d2ccda50)
MAGE/DesignElement/ReporterCompositeMap.pm: HASH(0x55c8d112e4e8)
MAGE/DesignElement/ReporterPosition.pm: HASH(0x55c8d149de18)
MAGE/Experiment.pm: HASH(0x55c8d2cb3818)
MAGE/Experiment/Experiment.pm: HASH(0x55c8d24c4078)
MAGE/Experiment/ExperimentDesign.pm: HASH(0x55c8d148b480)
MAGE/Experiment/ExperimentalFactor.pm: HASH(0x55c8d2cdceb0)
MAGE/Experiment/FactorValue.pm: HASH(0x55c8d0e49448)
MAGE/Extendable.pm: HASH(0x55c8d04e6ef0)
MAGE/HigherLevelAnalysis.pm: HASH(0x55c8d3070fd8)
MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm: HASH(0x55c8d1601790)
MAGE/HigherLevelAnalysis/Node.pm: HASH(0x55c8d1176720)
MAGE/HigherLevelAnalysis/NodeContents.pm: HASH(0x55c8d1405280)
MAGE/HigherLevelAnalysis/NodeValue.pm: HASH(0x55c8d1631be8)
MAGE/Identifiable.pm: HASH(0x55c8d1176990)
MAGE/Measurement.pm: HASH(0x55c8cf7adf70)
MAGE/Measurement/ConcentrationUnit.pm: HASH(0x55c8d149de90)
MAGE/Measurement/DistanceUnit.pm: HASH(0x55c8d1332420)
MAGE/Measurement/MassUnit.pm: HASH(0x55c8d2ccd6c0)
MAGE/Measurement/Measurement.pm: HASH(0x55c8d146f038)
MAGE/Measurement/QuantityUnit.pm: HASH(0x55c8d1631a38)
MAGE/Measurement/TemperatureUnit.pm: HASH(0x55c8d0fa9720)
MAGE/Measurement/TimeUnit.pm: HASH(0x55c8d15dd130)
MAGE/Measurement/Unit.pm: HASH(0x55c8d121f5d8)
MAGE/Measurement/VolumeUnit.pm: HASH(0x55c8d16721e8)
MAGE/NameValueType.pm: HASH(0x55c8d1418478)
MAGE/Protocol.pm: HASH(0x55c8d0f29a60)
MAGE/Protocol/Hardware.pm: HASH(0x55c8cf7538f0)
MAGE/Protocol/HardwareApplication.pm: HASH(0x55c8d2caffc0)
MAGE/Protocol/Parameter.pm: HASH(0x55c8d1358f18)
MAGE/Protocol/ParameterValue.pm: HASH(0x55c8d1176708)
MAGE/Protocol/Parameterizable.pm: HASH(0x55c8d2cc2240)
MAGE/Protocol/ParameterizableApplication.pm: HASH(0x55c8d13b9058)
MAGE/Protocol/Protocol.pm: HASH(0x55c8d0fa0570)
MAGE/Protocol/ProtocolApplication.pm: HASH(0x55c8d1176e70)
MAGE/Protocol/Software.pm: HASH(0x55c8d0f814f0)
MAGE/Protocol/SoftwareApplication.pm: HASH(0x55c8d13a5810)
MAGE/QuantitationType.pm: HASH(0x55c8d1088ed8)
MAGE/QuantitationType/ConfidenceIndicator.pm: HASH(0x55c8d113c300)
MAGE/QuantitationType/DerivedSignal.pm: HASH(0x55c8d2cd5878)
MAGE/QuantitationType/Error.pm: HASH(0x55c8d1615528)
MAGE/QuantitationType/ExpectedValue.pm: HASH(0x55c8d12a0ce0)
MAGE/QuantitationType/Failed.pm: HASH(0x55c8d1088f50)
MAGE/QuantitationType/MeasuredSignal.pm: HASH(0x55c8d147c418)
MAGE/QuantitationType/PValue.pm: HASH(0x55c8d2cd5860)
MAGE/QuantitationType/PresentAbsent.pm: HASH(0x55c8d100feb0)
MAGE/QuantitationType/QuantitationType.pm: HASH(0x55c8d0fee060)
MAGE/QuantitationType/Ratio.pm: HASH(0x55c8d11dfe58)
MAGE/QuantitationType/SpecializedQuantitationType.pm: HASH(0x55c8d0edc840)
MAGE/QuantitationType/StandardQuantitationType.pm: HASH(0x55c8d0333e10)

consistent_version

Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).

Error: 0.99,20020902.3

1 Experimental Issue

has_separate_license_file: This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name	Abstract	Version	View
Bio::MAGE	Container module for classes in the MAGE MAGE package	20020902.3	metacpan
Bio::MAGE::DocumentHandler			metacpan
Bio::MAGE::SQLWriter	a module for exporting MAGE-OM objects to a database		metacpan
Bio::MAGE::XML::Handler			metacpan
Bio::MAGE::XML::Handler::ContentHandler			metacpan
Bio::MAGE::XML::Handler::ObjectHandler::SQL	DESCRIPTION of Object		metacpan
Bio::MAGE::XML::Handler::ObjectHandlerI	Abstract class for processing Bio::MAGE objects.	0.99	metacpan
Bio::MAGE::XML::Reader	a module for exporting MAGE-ML		metacpan
Bio::MAGE::XML::Writer	a module for exporting MAGE-ML		metacpan
Bio::MAGE::XMLUtils			metacpan

Other Files


ChangeLog	metacpan
MANIFEST	metacpan
Makefile.PL	metacpan