GBrowse 1.994
- Released by
- LDS
- Version
- Release Date
- 2009-05-31
- Kwalitee
- 137.5
- Core Kwalitee
- 90.62
- LINKS
GBrowse 1.994 Deleted
Security Advisories
An attacker is able to delete other users' accounts. No httponly cookie flag. Cross-site scripting vulnerability in generation of citation text.
Fixed version: >=2.56
Reported: 2017-01-15
Kwalitee Issues
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::DB::Tagger::Tag, Bio::Graphics::Browser::Admin, Bio::Graphics::Browser::Shellwords
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: GBrowse-1.994/contrib/install_macosx/BuildConfig.pm -- Around line 24: Unknown directive: =over4 Around line 26: '=item' outside of any '=over' GBrowse-1.994/docs/pod/CONFIGURE_HOWTO.pod -- Around line 1185: Expected '=item *' Around line 1202: Expected '=item *' Around line 1212: Expected '=item *' Around line 2352: Non-ASCII character seen before =encoding in 'Gènes'. Assuming CP1252 GBrowse-1.994/docs/pod/FAQ.pod -- Around line 48: Unknown E content in E<gmod-gbrowse@lists.sourceforge.net> GBrowse-1.994/lib/Bio/Graphics/Browser/AuthorizedFeatureFile.pm -- Around line 25: =over is the last thing in the document?! GBrowse-1.994/lib/Bio/Graphics/Browser/DataBase.pm -- Around line 46: '=item' outside of any '=over' =over without closing =back GBrowse-1.994/lib/Bio/Graphics/Browser/DataSource.pm -- Around line 113: You forgot a '=back' before '=head2' Around line 555: '=item' outside of any '=over' Around line 732: You forgot a '=back' before '=head2'
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::DB::GFF::Aggregator::match_gap, Bio::DB::GFF::Aggregator::reftranscript, Bio::DB::GFF::Aggregator::waba_alignment, Bio::DB::GFF::Aggregator::wormbase_gene, Bio::DB::GFF::SyntenyBlock, Bio::DB::GFF::SyntenyIO, Bio::DB::Tagger::Tag, Bio::Graphics::Browser::Admin, Bio::Graphics::Browser::GFFPrinter, Bio::Graphics::Browser::GFFhelper, Bio::Graphics::Browser::I18n, Bio::Graphics::Browser::Markup, Bio::Graphics::Browser::OptionPick, Bio::Graphics::Browser::PadAlignment, Bio::Graphics::Browser::Plugin, Bio::Graphics::Browser::PluginSet, Bio::Graphics::Browser::Realign, Bio::Graphics::Browser::RemoteSet, Bio::Graphics::Browser::Render::Slave, Bio::Graphics::Browser::Shellwords, Bio::Graphics::Browser::UploadSet, Bio::Graphics::Browser::UserData, Bio::Graphics::Browser::Util, Bio::Graphics::Karyotype, CGI::Toggle
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 0.10,0.20,0.30,1.994
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::DB::GFF::Aggregator::match_gap | GFF3 match aggregator | metacpan | |
| Bio::DB::GFF::Aggregator::reftranscript | 0.10 | metacpan | |
| Bio::DB::GFF::Aggregator::waba_alignment | A WABA alignment | 0.20 | metacpan |
| Bio::DB::GFF::Aggregator::wormbase_gene | Wormbase gene aggregator | 0.30 | metacpan |
| Bio::DB::GFF::SyntenyBlock | metacpan | ||
| Bio::DB::GFF::SyntenyIO | metacpan | ||
| Bio::DB::Tagger | Simple object tagging system | metacpan | |
| Bio::DB::Tagger::Iterator | metacpan | ||
| Bio::DB::Tagger::Tag | Authored tags | metacpan | |
| Bio::DB::Tagger::mysql | metacpan | ||
| Bio::Graphics::Browser | 1.994 | metacpan | |
| Bio::Graphics::Browser::Admin | Administrative interface for GBrowse | metacpan | |
| Bio::Graphics::Browser::AuthorizedFeatureFile | Add HTTP authorization features to FeatureFile | metacpan | |
| Bio::Graphics::Browser::CachedTrack | metacpan | ||
| Bio::Graphics::Browser::DataBase | A simple cache for database handles | metacpan | |
| Bio::Graphics::Browser::DataSource | metacpan | ||
| Bio::Graphics::Browser::GFFPrinter | metacpan | ||
| Bio::Graphics::Browser::GFFhelper | Helps gbrowse plugins handle GFF | metacpan | |
| Bio::Graphics::Browser::I18n | metacpan | ||
| Bio::Graphics::Browser::Markup | Markup routines for sequences in text form | metacpan | |
| Bio::Graphics::Browser::MetaSegment | metacpan | ||
| Bio::Graphics::Browser::MetaSegment::Iterator | metacpan | ||
| Bio::Graphics::Browser::OptionPick | Pick options | metacpan | |
| Bio::Graphics::Browser::PadAlignment | Insert pads into a multiple alignment | metacpan | |
| Bio::Graphics::Browser::Plugin | Base class for gbrowse plugins. | 0.20 | metacpan |
| Bio::Graphics::Browser::PluginSet | A set of plugins | metacpan | |
| Bio::Graphics::Browser::Realign | Perl extension for Smith-Waterman alignments | metacpan | |
| Bio::Graphics::Browser::Region | metacpan | ||
| Bio::Graphics::Browser::RegionSearch | Search through multiple databases for feature matches. | metacpan | |
| Bio::Graphics::Browser::RemoteSet | metacpan | ||
| Bio::Graphics::Browser::Render | metacpan | ||
| Bio::Graphics::Browser::Render::HTML | metacpan | ||
| Bio::Graphics::Browser::Render::Slave | metacpan | ||
| Bio::Graphics::Browser::Render::Slave::Status | metacpan | ||
| Bio::Graphics::Browser::RenderPanels | metacpan | ||
| Bio::Graphics::Browser::Session | metacpan | ||
| Bio::Graphics::Browser::Shellwords | metacpan | ||
| Bio::Graphics::Browser::UploadSet | A set of uploaded feature files | metacpan | |
| Bio::Graphics::Browser::UserData | metacpan | ||
| Bio::Graphics::Browser::Util | Exported utilities | metacpan | |
| Bio::Graphics::GBrowseFeature | metacpan | ||
| Bio::Graphics::Karyotype | metacpan | ||
| CGI::Toggle | Utility methods for collapsible sections | metacpan | |
| FakeHomol | metacpan |