Polloc 1.5.1
- Released by
- LRR
- Version
- Release Date
- 2011-06-06
- Kwalitee
- 140.62
- Core Kwalitee
- 87.5
- LINKS
Polloc 1.5.1
Kwalitee Issues
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- distname_matches_name_in_meta
-
Use a proper tool to make a distribution. You might also need to fix META files if you keep them in the repository.
Error: Bio::Polloc
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio::Polloc-1.0501/lib/Bio/Polloc/GroupCriteria/operator.pm -- Around line 15: Non-ASCII character seen before =encoding in '# ...'. Assuming UTF-8 Bio::Polloc-1.0501/lib/Bio/Polloc/GroupCriteria.pm -- Around line 725: You forgot a '=back' before '=head2' You forgot a '=back' before '=head2' Around line 816: =back without =over Around line 818: =back without =over Bio::Polloc-1.0501/lib/Bio/Polloc/LocusIO.pm -- Around line 149: You forgot a '=back' before '=head2' Around line 182: =back without =over Bio::Polloc-1.0501/lib/Bio/Polloc/Rule/crispr.pm -- Around line 51: You forgot a '=back' before '=head3' Bio::Polloc-1.0501/lib/Bio/Polloc/RuleSet/cfg.pm -- Around line 52: Expected text after =item, not a bullet Around line 56: Expected text after =item, not a bullet Around line 258: You forgot a '=back' before '=head2' Bio::Polloc-1.0501/lib/Bio/Polloc/TypingI.pm -- Around line 396: '=item' outside of any '=over' Around line 415: You forgot a '=back' before '=head1'
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::Polloc::Genome, Bio::Polloc::GroupCriteria, Bio::Polloc::GroupCriteria::operator, Bio::Polloc::GroupCriteria::operator::bool, Bio::Polloc::GroupCriteria::operator::cons, Bio::Polloc::GroupCriteria::operator::num, Bio::Polloc::GroupCriteria::operator::seq, Bio::Polloc::LociGroup, Bio::Polloc::Locus::amplicon, Bio::Polloc::Locus::composition, Bio::Polloc::Locus::crispr, Bio::Polloc::Locus::extend, Bio::Polloc::Locus::generic, Bio::Polloc::Locus::pattern, Bio::Polloc::Locus::repeat, Bio::Polloc::LocusI, Bio::Polloc::LocusIO, Bio::Polloc::LocusIO::gff3, Bio::Polloc::Polloc::Config, Bio::Polloc::Polloc::Error, Bio::Polloc::Polloc::IO, Bio::Polloc::Polloc::Root, Bio::Polloc::Rule::boolean, Bio::Polloc::Rule::composition, Bio::Polloc::Rule::crispr, Bio::Polloc::Rule::pattern, Bio::Polloc::Rule::profile, Bio::Polloc::Rule::repeat, Bio::Polloc::Rule::tandemrepeat, Bio::Polloc::RuleI, Bio::Polloc::RuleIO, Bio::Polloc::RuleSet::cfg, Bio::Polloc::Typing::bandingPattern, Bio::Polloc::Typing::bandingPattern::amplification, Bio::Polloc::TypingI, Bio::Polloc::TypingIO, Bio::Polloc::TypingIO::cfg
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::Polloc::Genome | A group of sequences from the same organism | 0 | metacpan |
| Bio::Polloc::GroupCriteria | Rules to group loci | 0 | metacpan |
| Bio::Polloc::GroupCriteria::operator | An acillary object for Bio::Polloc::GroupCriteria | 0 | metacpan |
| Bio::Polloc::GroupCriteria::operator::bool | A boolean operator | 0 | metacpan |
| Bio::Polloc::GroupCriteria::operator::cons | A constant | 0 | metacpan |
| Bio::Polloc::GroupCriteria::operator::num | A numeric operator | 0 | metacpan |
| Bio::Polloc::GroupCriteria::operator::seq | A sequence operator | 0 | metacpan |
| Bio::Polloc::LociGroup | A group of loci | 0 | metacpan |
| Bio::Polloc::Locus::amplicon | An amplification product | 0 | metacpan |
| Bio::Polloc::Locus::composition | A composition feature | 0 | metacpan |
| Bio::Polloc::Locus::crispr | A CRISPR locus | 0 | metacpan |
| Bio::Polloc::Locus::extend | A feature based on another one | 0 | metacpan |
| Bio::Polloc::Locus::generic | An unknown feature | 0 | metacpan |
| Bio::Polloc::Locus::pattern | A loci matching a pattern. | 0 | metacpan |
| Bio::Polloc::Locus::repeat | A repetitive locus | 0 | metacpan |
| Bio::Polloc::LocusI | Interface of C<Bio::Polloc::Locus::*> objects | 0 | metacpan |
| Bio::Polloc::LocusIO | I/O interface of C<Bio::Polloc::Locus::*> objects | 0 | metacpan |
| Bio::Polloc::LocusIO::gff3 | A LocusIO for Gff3 | 0 | metacpan |
| Bio::Polloc::Polloc::Config | Handles .cfg files | 0 | metacpan |
| Bio::Polloc::Polloc::Error | Errors handler for the Bio::Polloc::* packages | 0 | metacpan |
| Bio::Polloc::Polloc::IO | I/O interface for the Bio::Polloc::* packages | 0 | metacpan |
| Bio::Polloc::Polloc::Root | 1.0501 | metacpan | |
| Bio::Polloc::Rule::boolean | A rule of type boolean operator | 0 | metacpan |
| Bio::Polloc::Rule::composition | A rule of type composition | 0 | metacpan |
| Bio::Polloc::Rule::crispr | A rule of type CRISPR | 0 | metacpan |
| Bio::Polloc::Rule::pattern | A rule determined by a pattern | 0 | metacpan |
| Bio::Polloc::Rule::profile | A rule of type profile | 0 | metacpan |
| Bio::Polloc::Rule::repeat | A rule of type repeat | 0 | metacpan |
| Bio::Polloc::Rule::tandemrepeat | A rule of type tandemrepeat | 0 | metacpan |
| Bio::Polloc::RuleI | Generic rules interface | 0 | metacpan |
| Bio::Polloc::RuleIO | I/O interface for the sets of rules (L<Bio::Polloc::RuleI>) | 0 | metacpan |
| Bio::Polloc::RuleSet::cfg | Implementation of Bio::Polloc::RuleIO for .cfg files | 0 | metacpan |
| Bio::Polloc::Typing::bandingPattern | banding-pattern-based methods for typing assessment | 0 | metacpan |
| Bio::Polloc::Typing::bandingPattern::amplification | banding-pattern-based methods for typing assessment using amplification | 0 | metacpan |
| Bio::Polloc::TypingI | Generic typing interface | 0 | metacpan |
| Bio::Polloc::TypingIO | I/O interface for genotyping methods (L<Bio::Polloc::TypingI>) | 0 | metacpan |
| Bio::Polloc::TypingIO::cfg | Implementation of Bio::Polloc::TypingIO for .cfg files | 0 | metacpan |