Kwalitee Issues

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

no_unauthorized_packages

Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.

Error:

  • Bio::Das::ProServer::Config
  • Bio::Das::ProServer::SourceAdaptor
  • Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio
  • Bio::Das::ProServer::SourceAdaptor::Transport::dbi
  • Bio::Das::ProServer::SourceAdaptor::Transport::file
  • Bio::Das::ProServer::SourceAdaptor::Transport::generic
  • Bio::Das::ProServer::SourceAdaptor::Transport::getz
  • Bio::Das::ProServer::SourceAdaptor::Transport::oracle
  • Bio::Das::ProServer::SourceAdaptor::Transport::wgetz
  • Bio::Das::ProServer::SourceAdaptor::bioseq
  • Bio::Das::ProServer::SourceAdaptor::simple

consistent_version

Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).

Error: 453,506,524,528,531,537,544,548,549,558,559,567,569,585,637,651,672

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name Abstract Version View
Bio::Das::ProServer 651 metacpan
Bio::Das::ProServer::Authenticator authenticates DAS requests 549 metacpan
Bio::Das::ProServer::Authenticator::http authenticates DAS requests by issuing requests to a remote authority 558 metacpan
Bio::Das::ProServer::Authenticator::ip authenticates DAS requests by IP address 453 metacpan
Bio::Das::ProServer::Config configuration parsing and hooks 672 metacpan
Bio::Das::ProServer::SourceAdaptor base class for sources 637 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::bed12 DBI-like access to a BED file 548 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio A ProServer transport module that works off any flat file that Bio::SeqIO supports. 528 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::csv Comma-separated-values transport layer 531 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::dbi A DBI transport layer (actually customised for MySQL) 559 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::ensembl 569 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::file 567 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::generic A generic transport layer for deriving others from 528 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::getz Pulls features over command-line SRS/getz transport 528 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::oracle Oracle/DBI transport layer 528 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::sif 544 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::wgetz A ProServer transport module for wgetz (SRS web access) 548 metacpan
Bio::Das::ProServer::SourceAdaptor::all_in_group 549 metacpan
Bio::Das::ProServer::SourceAdaptor::bed12 0 metacpan
Bio::Das::ProServer::SourceAdaptor::bioseq A ProServer source adaptor for converting Bio::Seq objects into DAS features. See also "Transport/bioseqio.pm". 524 metacpan
Bio::Das::ProServer::SourceAdaptor::file adaptor for file-based DAS sources metacpan
Bio::Das::ProServer::SourceAdaptor::grouped_db 585 metacpan
Bio::Das::ProServer::SourceAdaptor::proxy 524 metacpan
Bio::Das::ProServer::SourceAdaptor::sif 537 metacpan
Bio::Das::ProServer::SourceAdaptor::simple 549 metacpan
Bio::Das::ProServer::SourceAdaptor::simple_interaction 549 metacpan
Bio::Das::ProServer::SourceAdaptor::simple_volmap 524 metacpan
Bio::Das::ProServer::SourceAdaptor::simpledb Builds simple DAS features from a database 524 metacpan
Bio::Das::ProServer::SourceAdaptor::styletest 548 metacpan
Bio::Das::ProServer::SourceHydra A runtime factory for B::D::P::SourceAdaptors 549 metacpan
Bio::Das::ProServer::SourceHydra::dbi A database-backed implementation of B::D::P::SourceHydra 559 metacpan
Bio::Das::ProServer::SourceHydra::sql A database-backed implementation of B::D::P::SourceHydra 506 metacpan

Other Files

Build.PL metacpan
Changes metacpan
MANIFEST metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan