Errors

manifest_matches_dist

• MANIFEST (128) does not match dist (191):
• Missing in MANIFEST: CVS/Entries, CVS/Repository, CVS/Root, GO.pm, GO/AppHandles/.#AppHandleSqlImpl.pm.1.88, GO/AppHandles/.#AppHandleSqlImpl.pm.1.89, GO/AppHandles/CVS/Entries, GO/AppHandles/CVS/Repository, GO/AppHandles/CVS/Root, GO/CVS/Entries, GO/CVS/Repository, GO/CVS/Root, GO/Handlers/CVS/Entries, GO/Handlers/CVS/Repository, GO/Handlers/CVS/Root, GO/Reasoner.pm, doc/CVS/Entries, doc/CVS/Repository, doc/CVS/Root, scripts/CVS/Entries, scripts/CVS/Repository, scripts/CVS/Root, scripts/fill-path.pl, scripts/go-create-database-and-load.pl, scripts/go-db-reasoner.pl, scripts/go-do-nothing.pl, scripts/go-dump-owl.pl, scripts/go-noseq-load.pl, scripts/go-process-report-template.pl, scripts/go_db_install.pl, scripts/load-go-assoc-bulk.pl, scripts/load-linkfile-into-graph_path.pl, scripts/load-ppod-set-full.pl, scripts/load-refg-set-full.pl, scripts/load-refg-set.pl, scripts/load-sp-bulk.pl, scripts/load-tax-hierarchy-into-db.pl, scripts/scan_for_non-ascii.pl, t/CVS/Entries, t/CVS/Repository, t/CVS/Root, t/d190xrf_abbs.t, t/d200multispecies.t, t/d210annotation_properties.t, t/d220obsolete_metadata.t, t/d230load_synonym.t, t/d240load_refg.t, t/d250multiqualifiers.t, t/d260regulates.t, t/d270annotation_double_taxon.t, t/data/CVS/Entries, t/data/CVS/Repository, t/data/CVS/Root, t/data/GO.xrf_abbs, t/data/gene_assoc-with-quals.mgi, t/data/gene_association-ache.all, t/data/gene_association.multitaxontest, t/data/gene_association.pamgo.test, t/data/gene_association.test_properties, t/data/go-dual-test.obo, t/data/obsolete.obo, t/data/regulation_test.obo, t/data/test_synonym.obo, t/t460deep_product_count.t
• Missing in Dist: META.yml

no_pod_errors

go-db-perl-0.04/GO/AppHandle.pm -- Around line 113: Non-ASCII character seen before =encoding in 'hþtp://www.geneontology.org'. Assuming CP1252 Around line 1183: '=item' outside of any '=over' Around line 1215: You forgot a '=back' before '=head3' go-db-perl-0.04/GO/AppHandles/AppHandleSqlImpl.pm -- Around line 1100: '=item' outside of any '=over' =over without closing =back go-db-perl-0.04/scripts/go-do-nothing.pl -- Around line 410: You forgot a '=back' before '=head1' go-db-perl-0.04/scripts/go-prepare-release.pl -- Around line 445: You forgot a '=back' before '=head1'

prereq_matches_use

• GO::Handlers::base
• GO::IO::Blast
• GO::Model::Association
• GO::Model::Evidence
• GO::Model::GeneProduct
• GO::Model::Graph
• GO::Model::Modification
• GO::Model::Relationship
• GO::Model::Root
• GO::Model::Term
• GO::Model::Xref
• GO::ObjFactory
• GO::Parser
• GO::Utils
• Inline
• Inline::C

test_prereq_matches_use

• GO::IO::Blast
• GO::Model::Evidence
• GO::Model::TreeIterator
• GO::Parser

use_strict

GO::Handlers::db, GO::TestHarness

use_warnings

GO, GO::Admin, GO::AppHandle, GO::AppHandles::AppHandleAbstractSqlImpl, GO::AppHandles::AppHandleCWrapper, GO::AppHandles::AppHandleCachingImpl, GO::AppHandles::AppHandleChadoSqlImpl, GO::AppHandles::AppHandlePgImpl, GO::AppHandles::AppHandleSqlImpl, GO::DebugUtils, GO::Handlers::db, GO::Handlers::genericdb, GO::Handlers::godb, GO::Reasoner, GO::SqlWrapper, GO::Tango, GO::TestHarness