App-Sandy 0.19
Kwalitee Issues
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: App::Sandy, App::Sandy::CLI, App::Sandy::CLI::App, App::Sandy::CLI::Command, App::Sandy::Command::Citation, App::Sandy::Command::Expression, App::Sandy::Command::Expression::Add, App::Sandy::Command::Expression::Dump, App::Sandy::Command::Expression::Remove, App::Sandy::Command::Expression::Restore, App::Sandy::Command::Genome, App::Sandy::Command::Quality, App::Sandy::Command::Quality::Add, App::Sandy::Command::Quality::Dump, App::Sandy::Command::Quality::Remove, App::Sandy::Command::Quality::Restore, App::Sandy::Command::Transcriptome, App::Sandy::Command::Variation, App::Sandy::Command::Variation::Add, App::Sandy::Command::Variation::Dump, App::Sandy::Command::Variation::Remove, App::Sandy::Command::Variation::Restore, App::Sandy::Command::Version, App::Sandy::DB, App::Sandy::DB::Handle::Expression, App::Sandy::DB::Handle::Quality, App::Sandy::DB::Handle::Variation, App::Sandy::InterlaceProcesses, App::Sandy::PieceTable, App::Sandy::Quality, App::Sandy::Read, App::Sandy::Read::PairedEnd, App::Sandy::Read::SingleEnd, App::Sandy::Role::BSearch, App::Sandy::Role::Counter, App::Sandy::Role::Digest, App::Sandy::Role::IO, App::Sandy::Role::ParseArgv, App::Sandy::Role::RNorm, App::Sandy::Role::RunTimeTemplate, App::Sandy::Role::SeqID, App::Sandy::Role::Statistic, App::Sandy::Role::Template::Fastq, App::Sandy::Role::Template::Sam, App::Sandy::Seq, App::Sandy::Seq::PairedEnd, App::Sandy::Seq::SingleEnd, App::Sandy::Simulator, App::Sandy::WeightedRaffle
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: App::Sandy, App::Sandy::CLI, App::Sandy::CLI::App, App::Sandy::CLI::Command, App::Sandy::Command::Citation, App::Sandy::Command::Expression, App::Sandy::Command::Expression::Add, App::Sandy::Command::Expression::Dump, App::Sandy::Command::Expression::Remove, App::Sandy::Command::Expression::Restore, App::Sandy::Command::Genome, App::Sandy::Command::Quality, App::Sandy::Command::Quality::Add, App::Sandy::Command::Quality::Dump, App::Sandy::Command::Quality::Remove, App::Sandy::Command::Quality::Restore, App::Sandy::Command::Transcriptome, App::Sandy::Command::Variation, App::Sandy::Command::Variation::Add, App::Sandy::Command::Variation::Dump, App::Sandy::Command::Variation::Remove, App::Sandy::Command::Variation::Restore, App::Sandy::Command::Version, App::Sandy::DB, App::Sandy::DB::Handle::Expression, App::Sandy::DB::Handle::Quality, App::Sandy::DB::Handle::Variation, App::Sandy::InterlaceProcesses, App::Sandy::PieceTable, App::Sandy::Quality, App::Sandy::Read, App::Sandy::Read::PairedEnd, App::Sandy::Read::SingleEnd, App::Sandy::Role::BSearch, App::Sandy::Role::Counter, App::Sandy::Role::Digest, App::Sandy::Role::IO, App::Sandy::Role::ParseArgv, App::Sandy::Role::RNorm, App::Sandy::Role::RunTimeTemplate, App::Sandy::Role::SeqID, App::Sandy::Role::Statistic, App::Sandy::Role::Template::Fastq, App::Sandy::Role::Template::Sam, App::Sandy::Seq, App::Sandy::Seq::PairedEnd, App::Sandy::Seq::SingleEnd, App::Sandy::Simulator, App::Sandy::WeightedRaffle
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
Modules
Name | Abstract | Version | View |
---|---|---|---|
App::Sandy | App builder that simulates single-end and paired-end reads. | 0.19 | metacpan |
App::Sandy::Base | Policy and base module to App::Sandy project. | 0.19 | metacpan |
App::Sandy::CLI | Base class for command line interface. | 0.19 | metacpan |
App::Sandy::CLI::App | App::Sandy::CLI subclass for command line application interface. | 0.19 | metacpan |
App::Sandy::CLI::Command | App::Sandy::CLI subclass for commands interface | 0.19 | metacpan |
App::Sandy::Command::Citation | citation command class. Print citation | 0.19 | metacpan |
App::Sandy::Command::Expression | expression command class. Manage expression-matrix database. | 0.19 | metacpan |
App::Sandy::Command::Expression::Add | expression subcommand class. Add an expression-matrix to the database. | 0.19 | metacpan |
App::Sandy::Command::Expression::Dump | expression subcommand class. Dump an expression-matrix from database. | 0.19 | metacpan |
App::Sandy::Command::Expression::Remove | expression subcommand class. Remove an expression-matrix from database. | 0.19 | metacpan |
App::Sandy::Command::Expression::Restore | expression subcommand class. Restore database. | 0.19 | metacpan |
App::Sandy::Command::Genome | simulate command class. Simulate genome sequencing | 0.19 | metacpan |
App::Sandy::Command::Quality | quality command class. Manage quality profile database. | 0.19 | metacpan |
App::Sandy::Command::Quality::Add | quality subcommand class. Add a quality profile to the database. | 0.19 | metacpan |
App::Sandy::Command::Quality::Dump | quality subcommand class. Dump a quality profile from database. | 0.19 | metacpan |
App::Sandy::Command::Quality::Remove | quality subcommand class. Remove a quality profile from database. | 0.19 | metacpan |
App::Sandy::Command::Quality::Restore | quality subcommand class. Restore database. | 0.19 | metacpan |
App::Sandy::Command::Transcriptome | simulate command class. Simulate transcriptome sequencing | 0.19 | metacpan |
App::Sandy::Command::Variation | variation command class. Manage structural variation database. | 0.19 | metacpan |
App::Sandy::Command::Variation::Add | variation subcommand class. Add structural variation to the database. | 0.19 | metacpan |
App::Sandy::Command::Variation::Dump | variation subcommand class. Dump structural variation from database. | 0.19 | metacpan |
App::Sandy::Command::Variation::Remove | variation subcommand class. Remove structural variation from database. | 0.19 | metacpan |
App::Sandy::Command::Variation::Restore | variation subcommand class. Restore database. | 0.19 | metacpan |
App::Sandy::Command::Version | version command class. Print version | 0.19 | metacpan |
App::Sandy::DB | Singleton class to manage database | 0.19 | metacpan |
App::Sandy::DB::Handle::Expression | Class to handle expression-matrix database schemas. | 0.19 | metacpan |
App::Sandy::DB::Handle::Quality | Class to handle quality database schemas. | 0.19 | metacpan |
App::Sandy::DB::Handle::Variation | Class to handle structural variation database schemas. | 0.19 | metacpan |
App::Sandy::DB::Schema | metacpan | ||
App::Sandy::DB::Schema::Result::ExpressionMatrix | metacpan | ||
App::Sandy::DB::Schema::Result::QualityProfile | metacpan | ||
App::Sandy::DB::Schema::Result::StructuralVariation | metacpan | ||
App::Sandy::InterlaceProcesses | Interlaces the processe id for differents processes, actually for parent, child processes. | 0.19 | metacpan |
App::Sandy::PieceTable | Implement a piece table data structure class | 0.19 | metacpan |
App::Sandy::Quality | Class to simulate quality entries | 0.19 | metacpan |
App::Sandy::Read | Base class to simulate reads | 0.19 | metacpan |
App::Sandy::Read::PairedEnd | App::Sandy::Read subclass for simulate paired-end reads. | 0.19 | metacpan |
App::Sandy::Read::SingleEnd | App::Sandy::Read subclass for simulate single-end reads. | 0.19 | metacpan |
App::Sandy::Role::BSearch | Binary search role | metacpan | |
App::Sandy::Role::Counter | Bayes counter | metacpan | |
App::Sandy::Role::Digest | Wrapper on Simulator class for genome/transcriptome sequencing | metacpan | |
App::Sandy::Role::IO | Input and output custom wrappers. | metacpan | |
App::Sandy::Role::ParseArgv | Getopt::Long wrapper. | metacpan | |
App::Sandy::Role::RNorm | Random normal distribution | metacpan | |
App::Sandy::Role::RunTimeTemplate | Extends class with runtime printf like function | metacpan | |
App::Sandy::Role::SeqID | Role for seqid standardization | metacpan | |
App::Sandy::Role::Statistic | Basic statistics | metacpan | |
App::Sandy::Role::Template::Fastq | Fastq template role | metacpan | |
App::Sandy::Role::Template::Sam | Sam template role | 0.19 | metacpan |
App::Sandy::Seq | Base class to simulate seq entries | 0.19 | metacpan |
App::Sandy::Seq::PairedEnd | App::Sandy::Seq subclass for simulate paired-end entries. | 0.19 | metacpan |
App::Sandy::Seq::SingleEnd | App::Sandy::Seq subclass for simulate single-end entries. | 0.19 | metacpan |
App::Sandy::Simulator | Class responsible to make the simulation | 0.19 | metacpan |
App::Sandy::Types | Moose type constraints for App::Sandy project | 0.19 | metacpan |
App::Sandy::WeightedRaffle | Weighted raffle interface. | 0.19 | metacpan |