CPANTS

App-SimulateReads 0.16 Latest

Kwalitee Issues

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: App::SimulateReads, App::SimulateReads::CLI, App::SimulateReads::CLI::App, App::SimulateReads::CLI::Command, App::SimulateReads::Command::Custom, App::SimulateReads::Command::Expression, App::SimulateReads::Command::Expression::Add, App::SimulateReads::Command::Expression::Remove, App::SimulateReads::Command::Expression::Restore, App::SimulateReads::Command::Genome, App::SimulateReads::Command::Quality, App::SimulateReads::Command::Quality::Add, App::SimulateReads::Command::Quality::Remove, App::SimulateReads::Command::Quality::Restore, App::SimulateReads::Command::Transcriptome, App::SimulateReads::DB, App::SimulateReads::DB::Handle::Expression, App::SimulateReads::DB::Handle::Quality, App::SimulateReads::Fastq, App::SimulateReads::Fastq::PairedEnd, App::SimulateReads::Fastq::SingleEnd, App::SimulateReads::InterlaceProcesses, App::SimulateReads::Quality, App::SimulateReads::Read, App::SimulateReads::Read::PairedEnd, App::SimulateReads::Read::SingleEnd, App::SimulateReads::Role::Digest, App::SimulateReads::Role::IO, App::SimulateReads::Role::ParseArgv, App::SimulateReads::Role::RunTimeTemplate, App::SimulateReads::Simulator, App::SimulateReads::WeightedRaffle

1 Extra Issue

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

1 Experimental Issue

meta_yml_has_provides: Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name	Abstract	Version	View
App::SimulateReads	App builder that simulates single-end and paired-end reads.	0.16	metacpan
App::SimulateReads::Base	Policy and base module to App::SimulateReads project.	0.16	metacpan
App::SimulateReads::CLI	Base class for command line interface.	0.16	metacpan
App::SimulateReads::CLI::App	App::SimulateReads::CLI subclass for command line application interface.	0.16	metacpan
App::SimulateReads::CLI::Command	App::SimulateReads::CLI subclass for commands interface	0.16	metacpan
App::SimulateReads::Command::Custom	simulate command class. Simulate a custom sequencing	0.16	metacpan
App::SimulateReads::Command::Expression	expression command class. Manage expression-matrix database.	0.16	metacpan
App::SimulateReads::Command::Expression::Add	expression subcommand class. Add an expression-matrix to the database.	0.16	metacpan
App::SimulateReads::Command::Expression::Remove	expression subcommand class. Remove an expression-matrix from database.	0.16	metacpan
App::SimulateReads::Command::Expression::Restore	expression subcommand class. Restore database.	0.16	metacpan
App::SimulateReads::Command::Genome	simulate command class. Simulate genome sequencing	0.16	metacpan
App::SimulateReads::Command::Quality	quality command class. Manage quality profile database.	0.16	metacpan
App::SimulateReads::Command::Quality::Add	quality subcommand class. Add a quality profile to the database.	0.16	metacpan
App::SimulateReads::Command::Quality::Remove	quality subcommand class. Remove a quality profile from database.	0.16	metacpan
App::SimulateReads::Command::Quality::Restore	quality subcommand class. Restore database.	0.16	metacpan
App::SimulateReads::Command::Transcriptome	simulate command class. Simulate transcriptome sequencing	0.16	metacpan
App::SimulateReads::DB	Singleton class to manage database	0.16	metacpan
App::SimulateReads::DB::Handle::Expression	Class to handle expression-matrix database schemas.	0.16	metacpan
App::SimulateReads::DB::Handle::Quality	Class to handle quality database schemas.	0.16	metacpan
App::SimulateReads::DB::Schema			metacpan
App::SimulateReads::DB::Schema::Result::ExpressionMatrix			metacpan
App::SimulateReads::DB::Schema::Result::QualityProfile			metacpan
App::SimulateReads::Fastq	Base class to simulate fastq entries	0.16	metacpan
App::SimulateReads::Fastq::PairedEnd	App::SimulateReads::Fastq subclass for simulate paired-end fastq entries.	0.16	metacpan
App::SimulateReads::Fastq::SingleEnd	App::SimulateReads::Fastq subclass for simulate single-end fastq entries.	0.16	metacpan
App::SimulateReads::InterlaceProcesses	Interlaces the processe id for differents processes, actually for parent, child processes.	0.16	metacpan
App::SimulateReads::Quality	Class to simulate quality entries	0.16	metacpan
App::SimulateReads::Read	Base class to simulate reads	0.16	metacpan
App::SimulateReads::Read::PairedEnd	App::SimulateReads::Read subclass for simulate paired-end reads.	0.16	metacpan
App::SimulateReads::Read::SingleEnd	App::SimulateReads::Read subclass for simulate single-end reads.	0.16	metacpan
App::SimulateReads::Role::Digest	Wrapper on Simulator class for genome/transcriptome sequencing	0.16	metacpan
App::SimulateReads::Role::IO	Input and output custom wrappers.	0.16	metacpan
App::SimulateReads::Role::ParseArgv	Getopt::Long wrapper.	0.16	metacpan
App::SimulateReads::Role::RunTimeTemplate	Extends class with runtime printf like function	0.16	metacpan
App::SimulateReads::Simulator	Class responsible to make the simulation	0.16	metacpan
App::SimulateReads::Types	Moose type constraints for App::SimulateReads project	0.16	metacpan
App::SimulateReads::WeightedRaffle	Weighted raffle interface.	0.16	metacpan

Other Files


Changes	metacpan
MANIFEST	metacpan
META.json	metacpan
META.yml	metacpan
Makefile.PL	metacpan
README.md	metacpan
dist.ini	metacpan