Kwalitee Issues

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name Abstract Version View
Bio::MLST::Blast::BlastN Wrapper around NCBI BlastN metacpan
Bio::MLST::Blast::Database Wrapper around NCBIs makeblastdb command metacpan
Bio::MLST::CDC::Convert Take in a fasta file of emmST sequences and convert it into an MLST format metacpan
Bio::MLST::Check Multilocus sequence type checking using blast metacpan
Bio::MLST::CheckMultipleSpecies High throughput multilocus sequence typing (MLST) checking against several MLST databases. metacpan
Bio::MLST::CompareAlleles Get a list of matching alleles between the sequence and database metacpan
Bio::MLST::DatabaseSettings Read in an XML file of settings and return a hash with the values. metacpan
Bio::MLST::Databases List available MLST databases metacpan
Bio::MLST::Download::Database Represents a single genus-species database on a single species metacpan
Bio::MLST::Download::Databases Represents multiple databases of species metacpan
Bio::MLST::Download::Downloadable Moose Role to download everything data metacpan
Bio::MLST::NormaliseFasta Take in a Fasta file, check for invalid characters and build a corrected file if needed. metacpan
Bio::MLST::OutputFasta Take in two hashes, both containing sequence names and sequences and output fasta files. metacpan
Bio::MLST::ProcessFasta Take in a fasta file, lookup the MLST database and create relevant files. metacpan
Bio::MLST::SearchForFiles Take in a species name and get the allele and profile files. metacpan
Bio::MLST::SequenceType Take in a list of matched alleles and look up the sequence type from the profile. metacpan
Bio::MLST::Spreadsheet::File Create a file representation of the ST results for multiple fasta files. metacpan
Bio::MLST::Spreadsheet::Row Create a row representation of the ST results for a single fasta file. metacpan
Bio::MLST::Types Moose types to use for validation. metacpan
Bio::MLST::Validate::Executable Validates the executable is available in the path before running it. metacpan
Bio::MLST::Validate::File Check to see if a file exists. For validation when classes have input files. metacpan
Bio::MLST::Validate::Resource Check to see if a file exists or if a uri is valid. For validation when classes have input files which may be local or on the web. metacpan

Other Files

MANIFEST metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan
README.md metacpan
dist.ini metacpan