GOBO 0.01

Released by
CMUNGALL
Version
Release Date
2009-07-21
Kwalitee
118.75
Core Kwalitee
78.12
LINKS

Kwalitee Issues

has_manifest

Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

has_human_readable_license

Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error: Cannot find MANIFEST in dist.

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: GOBO-0.01/GOBO/Analysis/AnalysisEngine.pm -- Around line 55: Non-ASCII character seen before =encoding in '∩'. Assuming UTF-8 GOBO-0.01/GOBO/DBIC/GODBModel/Graph.pm -- Around line 23: '=item' outside of any '=over' =over without closing =back GOBO-0.01/GOBO/DBIC/GODBModel/GraphT2T.pm -- Around line 24: '=item' outside of any '=over' =over without closing =back GOBO-0.01/GOBO/DBIC/GODBModel/Query.pm -- Around line 31: '=item' outside of any '=over' =over without closing =back GOBO-0.01/GOBO/DBIC/GODBModel/Resolver.pm -- Around line 28: '=item' outside of any '=over' =over without closing =back GOBO-0.01/GOBO/DBIC/GODBModel.pm -- Around line 26: '=item' outside of any '=over' =over without closing =back GOBO-0.01/GOBO/InferenceEngine.pm -- Around line 260: Non-ASCII character seen before =encoding in '∩'. Assuming UTF-8 GOBO-0.01/GOBO/Node.pm -- Around line 59: =back without =over

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: GOBO/AmiGO/Indexes/AmiGOStatementIndex.pm, GOBO/AmiGO/Indexes/AmiGOWrapper.pm, GOBO/Analysis/AnalysisEngine.pm, GOBO/Annotation.pm, GOBO/Attributed.pm, GOBO/Base.pm, GOBO/Bridges/Bio/TreeBridge.pm, GOBO/Bridges/Bridge.pm, GOBO/ClassExpression.pm, GOBO/ClassExpression/BooleanExpression.pm, GOBO/ClassExpression/Complement.pm, GOBO/ClassExpression/Intersection.pm, GOBO/ClassExpression/RelationalExpression.pm, GOBO/ClassExpression/Union.pm, GOBO/ClassNode.pm, GOBO/DB/AnnotationBulkLoader.pm, GOBO/DBIC/GODBModel.pm, GOBO/DBIC/GODBModel/Extension.pm, GOBO/DBIC/GODBModel/Graph.pm, GOBO/DBIC/GODBModel/GraphT2T.pm, GOBO/DBIC/GODBModel/Query.pm, GOBO/DBIC/GODBModel/Resolver.pm, GOBO/DBIC/GODBModel/Schema.pm, GOBO/DBIC/GODBModel/Schema/Association.pm, GOBO/DBIC/GODBModel/Schema/DB.pm, GOBO/DBIC/GODBModel/Schema/DBXRef.pm, GOBO/DBIC/GODBModel/Schema/Evidence.pm, GOBO/DBIC/GODBModel/Schema/EvidenceDBXRef.pm, GOBO/DBIC/GODBModel/Schema/GeneProduct.pm, GOBO/DBIC/GODBModel/Schema/GeneProductCount.pm, GOBO/DBIC/GODBModel/Schema/GeneProductHomolset.pm, GOBO/DBIC/GODBModel/Schema/GeneProductSeq.pm, GOBO/DBIC/GODBModel/Schema/GeneProductSynonym.pm, GOBO/DBIC/GODBModel/Schema/GraphPath.pm, GOBO/DBIC/GODBModel/Schema/Homolset.pm, GOBO/DBIC/GODBModel/Schema/InstanceData.pm, GOBO/DBIC/GODBModel/Schema/Seq.pm, GOBO/DBIC/GODBModel/Schema/SeqDBXRef.pm, GOBO/DBIC/GODBModel/Schema/Species.pm, GOBO/DBIC/GODBModel/Schema/Term.pm, GOBO/DBIC/GODBModel/Schema/Term2Term.pm, GOBO/DBIC/GODBModel/Schema/TermDBXRef.pm, GOBO/DBIC/GODBModel/Schema/TermSynonym.pm, GOBO/Definable.pm, GOBO/Error.pm, GOBO/Evidence.pm, GOBO/Formula.pm, GOBO/Gene.pm, GOBO/Graph.pm, GOBO/Identified.pm, GOBO/Indexes/NodeIndex.pm, GOBO/Indexes/StatementIndex.pm, GOBO/InferenceEngine.pm, GOBO/InferenceEngine/GAFInferenceEngine.pm, GOBO/InstanceNode.pm, GOBO/Labeled.pm, GOBO/LinkStatement.pm, GOBO/LiteralStatement.pm, GOBO/NegatedStatement.pm, GOBO/Node.pm, GOBO/Parsers/GAFParser.pm, GOBO/Parsers/OBOParser.pm, GOBO/Parsers/Parser.pm, GOBO/Phylo/Branch.pm, GOBO/Phylo/PhyloNode.pm, GOBO/Phylo/PhyloTree.pm, GOBO/RelationNode.pm, GOBO/SimpleRDF/Indexes/SimpleRDFStatementIndex.pm, GOBO/SimpleRDF/Indexes/SimpleRDFWrapper.pm, GOBO/Statement.pm, GOBO/Subset.pm, GOBO/Synonym.pm, GOBO/TermNode.pm, GOBO/Util/LuceneIndexer.pm, GOBO/Writers/CustomizableWriter.pm, GOBO/Writers/GAFWriter.pm, GOBO/Writers/OBOWriter.pm, GOBO/Writers/OBOXMLWriter.pm, GOBO/Writers/Writer.pm

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: GOBO::DBIC::GODBModel, GOBO::DBIC::GODBModel::Extension, GOBO::DBIC::GODBModel::Graph, GOBO::DBIC::GODBModel::GraphT2T, GOBO::DBIC::GODBModel::Query, GOBO::DBIC::GODBModel::Resolver, GOBO::DBIC::GODBModel::Schema, GOBO::DBIC::GODBModel::Schema::Association, GOBO::DBIC::GODBModel::Schema::DB, GOBO::DBIC::GODBModel::Schema::DBXRef, GOBO::DBIC::GODBModel::Schema::Evidence, GOBO::DBIC::GODBModel::Schema::EvidenceDBXRef, GOBO::DBIC::GODBModel::Schema::GeneProduct, GOBO::DBIC::GODBModel::Schema::GeneProductCount, GOBO::DBIC::GODBModel::Schema::GeneProductHomolset, GOBO::DBIC::GODBModel::Schema::GeneProductSeq, GOBO::DBIC::GODBModel::Schema::GeneProductSynonym, GOBO::DBIC::GODBModel::Schema::GraphPath, GOBO::DBIC::GODBModel::Schema::Homolset, GOBO::DBIC::GODBModel::Schema::InstanceData, GOBO::DBIC::GODBModel::Schema::Seq, GOBO::DBIC::GODBModel::Schema::SeqDBXRef, GOBO::DBIC::GODBModel::Schema::Species, GOBO::DBIC::GODBModel::Schema::Term, GOBO::DBIC::GODBModel::Schema::Term2Term, GOBO::DBIC::GODBModel::Schema::TermDBXRef, GOBO::DBIC::GODBModel::Schema::TermSynonym

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name Abstract Version View
GOBO::AmiGO::Indexes::AmiGOStatementIndex metacpan
GOBO::AmiGO::Indexes::AmiGOWrapper metacpan
GOBO::Analysis::AnalysisEngine metacpan
GOBO::Annotation metacpan
GOBO::Attributed metacpan
GOBO::Base metacpan
GOBO::Bridges::Bio::TreeBridge metacpan
GOBO::Bridges::Bridge metacpan
GOBO::ClassExpression metacpan
GOBO::ClassExpression::BooleanExpression metacpan
GOBO::ClassExpression::Complement metacpan
GOBO::ClassExpression::Intersection metacpan
GOBO::ClassExpression::RelationalExpression metacpan
GOBO::ClassExpression::Union metacpan
GOBO::ClassNode metacpan
GOBO::DB::AnnotationBulkLoader metacpan
GOBO::DBIC::GODBModel metacpan
GOBO::DBIC::GODBModel::Extension metacpan
GOBO::DBIC::GODBModel::Graph metacpan
GOBO::DBIC::GODBModel::GraphT2T metacpan
GOBO::DBIC::GODBModel::Query metacpan
GOBO::DBIC::GODBModel::Resolver metacpan
GOBO::DBIC::GODBModel::Schema metacpan
GOBO::DBIC::GODBModel::Schema::Association metacpan
GOBO::DBIC::GODBModel::Schema::DB metacpan
GOBO::DBIC::GODBModel::Schema::DBXRef metacpan
GOBO::DBIC::GODBModel::Schema::Evidence metacpan
GOBO::DBIC::GODBModel::Schema::EvidenceDBXRef metacpan
GOBO::DBIC::GODBModel::Schema::GeneProduct metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductCount metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductHomolset metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductSeq metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductSynonym metacpan
GOBO::DBIC::GODBModel::Schema::GraphPath metacpan
GOBO::DBIC::GODBModel::Schema::Homolset metacpan
GOBO::DBIC::GODBModel::Schema::InstanceData metacpan
GOBO::DBIC::GODBModel::Schema::Seq metacpan
GOBO::DBIC::GODBModel::Schema::SeqDBXRef metacpan
GOBO::DBIC::GODBModel::Schema::Species metacpan
GOBO::DBIC::GODBModel::Schema::Term metacpan
GOBO::DBIC::GODBModel::Schema::Term2Term metacpan
GOBO::DBIC::GODBModel::Schema::TermDBXRef metacpan
GOBO::DBIC::GODBModel::Schema::TermSynonym metacpan
GOBO::Definable metacpan
GOBO::Error metacpan
GOBO::Evidence metacpan
GOBO::Formula metacpan
GOBO::Gene metacpan
GOBO::Graph 0.01 metacpan
GOBO::Identified metacpan
GOBO::Indexes::NodeIndex metacpan
GOBO::Indexes::StatementIndex metacpan
GOBO::InferenceEngine metacpan
GOBO::InferenceEngine::GAFInferenceEngine metacpan
GOBO::InstanceNode metacpan
GOBO::Labeled metacpan
GOBO::LinkStatement metacpan
GOBO::LiteralStatement metacpan
GOBO::NegatedStatement metacpan
GOBO::Node metacpan
GOBO::Parsers::GAFParser metacpan
GOBO::Parsers::OBOParser metacpan
GOBO::Parsers::Parser metacpan
GOBO::Phylo::Branch metacpan
GOBO::Phylo::PhyloNode metacpan
GOBO::Phylo::PhyloTree metacpan
GOBO::RelationNode metacpan
GOBO::SimpleRDF::Indexes::SimpleRDFStatementIndex metacpan
GOBO::SimpleRDF::Indexes::SimpleRDFWrapper metacpan
GOBO::Statement metacpan
GOBO::Subset metacpan
GOBO::Synonym metacpan
GOBO::TermNode metacpan
GOBO::Util::LuceneIndexer metacpan
GOBO::Writers::CustomizableWriter metacpan
GOBO::Writers::GAFWriter metacpan
GOBO::Writers::OBOWriter metacpan
GOBO::Writers::OBOXMLWriter metacpan
GOBO::Writers::Writer metacpan

Other Files
META.yml metacpan
Makefile.PL metacpan
README metacpan