GOBO 0.03 Latest
Kwalitee Issues
- has_manifest
-
Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- no_generated_files
-
Remove the offending files/directories!
Error: pm_to_blib
- has_human_readable_license
-
Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- manifest_matches_dist
-
Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.
Error: Cannot find MANIFEST in dist.
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: GOBO, GOBO::Doc::FAQ
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: GOBO-0.03/GOBO/Analysis/AnalysisEngine.pm -- Around line 55: Non-ASCII character seen before =encoding in 'â©'. Assuming UTF-8 GOBO-0.03/GOBO/DBIC/GODBModel/Graph.pm -- Around line 23: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel/GraphT2T.pm -- Around line 24: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel/Query.pm -- Around line 31: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel/Resolver.pm -- Around line 28: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel.pm -- Around line 26: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/InferenceEngine.pm -- Around line 260: Non-ASCII character seen before =encoding in 'â©'. Assuming UTF-8 GOBO-0.03/GOBO/Node.pm -- Around line 59: =back without =over GOBO-0.03/GOBO/Parsers/OBOParser.pm -- Around line 8: =cut found outside a pod block. Skipping to next block. Around line 18: =cut found outside a pod block. Skipping to next block. GOBO-0.03/GOBO/Util/GraphFunctions.pm -- Around line 933: =cut found outside a pod block. Skipping to next block. GOBO-0.03/bin/compare-graphs.pl -- Around line 353: =cut found outside a pod block. Skipping to next block. Around line 377: =cut found outside a pod block. Skipping to next block. GOBO-0.03/bin/mapmaker.pl -- Around line 74: '=item' outside of any '=over' Around line 78: You forgot a '=back' before '=head2'
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: GOBO, GOBO::DBIC::GODBModel, GOBO::DBIC::GODBModel::Extension, GOBO::DBIC::GODBModel::Graph, GOBO::DBIC::GODBModel::GraphT2T, GOBO::DBIC::GODBModel::Query, GOBO::DBIC::GODBModel::Resolver, GOBO::DBIC::GODBModel::Schema, GOBO::DBIC::GODBModel::Schema::Association, GOBO::DBIC::GODBModel::Schema::DB, GOBO::DBIC::GODBModel::Schema::DBXRef, GOBO::DBIC::GODBModel::Schema::Evidence, GOBO::DBIC::GODBModel::Schema::EvidenceDBXRef, GOBO::DBIC::GODBModel::Schema::GeneProduct, GOBO::DBIC::GODBModel::Schema::GeneProductCount, GOBO::DBIC::GODBModel::Schema::GeneProductHomolset, GOBO::DBIC::GODBModel::Schema::GeneProductSeq, GOBO::DBIC::GODBModel::Schema::GeneProductSynonym, GOBO::DBIC::GODBModel::Schema::GraphPath, GOBO::DBIC::GODBModel::Schema::Homolset, GOBO::DBIC::GODBModel::Schema::InstanceData, GOBO::DBIC::GODBModel::Schema::Seq, GOBO::DBIC::GODBModel::Schema::SeqDBXRef, GOBO::DBIC::GODBModel::Schema::Species, GOBO::DBIC::GODBModel::Schema::Term, GOBO::DBIC::GODBModel::Schema::Term2Term, GOBO::DBIC::GODBModel::Schema::TermDBXRef, GOBO::DBIC::GODBModel::Schema::TermSynonym, GOBO::Doc::FAQ
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
Modules
Name | Abstract | Version | View |
---|---|---|---|
GOBO | 0.03 | metacpan | |
GOBO::AmiGO::Indexes::AmiGOStatementIndex | metacpan | ||
GOBO::AmiGO::Indexes::AmiGOWrapper | metacpan | ||
GOBO::Analysis::AnalysisEngine | metacpan | ||
GOBO::Annotation | metacpan | ||
GOBO::Attributed | metacpan | ||
GOBO::Base | metacpan | ||
GOBO::Bridges::Bio::TreeBridge | metacpan | ||
GOBO::Bridges::Bridge | metacpan | ||
GOBO::ClassExpression | metacpan | ||
GOBO::ClassExpression::BooleanExpression | metacpan | ||
GOBO::ClassExpression::Complement | metacpan | ||
GOBO::ClassExpression::Intersection | metacpan | ||
GOBO::ClassExpression::RelationalExpression | metacpan | ||
GOBO::ClassExpression::Union | metacpan | ||
GOBO::ClassNode | metacpan | ||
GOBO::DB::AnnotationBulkLoader | metacpan | ||
GOBO::DBIC::GODBModel | metacpan | ||
GOBO::DBIC::GODBModel::Extension | metacpan | ||
GOBO::DBIC::GODBModel::Graph | metacpan | ||
GOBO::DBIC::GODBModel::GraphT2T | metacpan | ||
GOBO::DBIC::GODBModel::Query | metacpan | ||
GOBO::DBIC::GODBModel::Resolver | metacpan | ||
GOBO::DBIC::GODBModel::Schema | metacpan | ||
GOBO::DBIC::GODBModel::Schema::Association | metacpan | ||
GOBO::DBIC::GODBModel::Schema::DB | metacpan | ||
GOBO::DBIC::GODBModel::Schema::DBXRef | metacpan | ||
GOBO::DBIC::GODBModel::Schema::Evidence | metacpan | ||
GOBO::DBIC::GODBModel::Schema::EvidenceDBXRef | metacpan | ||
GOBO::DBIC::GODBModel::Schema::GeneProduct | metacpan | ||
GOBO::DBIC::GODBModel::Schema::GeneProductCount | metacpan | ||
GOBO::DBIC::GODBModel::Schema::GeneProductHomolset | metacpan | ||
GOBO::DBIC::GODBModel::Schema::GeneProductSeq | metacpan | ||
GOBO::DBIC::GODBModel::Schema::GeneProductSynonym | metacpan | ||
GOBO::DBIC::GODBModel::Schema::GraphPath | metacpan | ||
GOBO::DBIC::GODBModel::Schema::Homolset | metacpan | ||
GOBO::DBIC::GODBModel::Schema::InstanceData | metacpan | ||
GOBO::DBIC::GODBModel::Schema::Seq | metacpan | ||
GOBO::DBIC::GODBModel::Schema::SeqDBXRef | metacpan | ||
GOBO::DBIC::GODBModel::Schema::Species | metacpan | ||
GOBO::DBIC::GODBModel::Schema::Term | metacpan | ||
GOBO::DBIC::GODBModel::Schema::Term2Term | metacpan | ||
GOBO::DBIC::GODBModel::Schema::TermDBXRef | metacpan | ||
GOBO::DBIC::GODBModel::Schema::TermSynonym | metacpan | ||
GOBO::Definable | metacpan | ||
GOBO::Doc::FAQ | Frequently Asked Questions | metacpan | |
GOBO::Error | metacpan | ||
GOBO::Evidence | metacpan | ||
GOBO::Formula | metacpan | ||
GOBO::Gene | metacpan | ||
GOBO::Graph | metacpan | ||
GOBO::Identified | metacpan | ||
GOBO::Indexes::NodeIndex | metacpan | ||
GOBO::Indexes::StatementIndex | metacpan | ||
GOBO::InferenceEngine | metacpan | ||
GOBO::InferenceEngine::GAFInferenceEngine | metacpan | ||
GOBO::InstanceNode | metacpan | ||
GOBO::Labeled | metacpan | ||
GOBO::LinkStatement | metacpan | ||
GOBO::LiteralStatement | metacpan | ||
GOBO::NegatedStatement | metacpan | ||
GOBO::Node | metacpan | ||
GOBO::Parsers::GAFParser | metacpan | ||
GOBO::Parsers::GraphParser | metacpan | ||
GOBO::Parsers::OBOParser | metacpan | ||
GOBO::Parsers::OBOParserDispatchHash | metacpan | ||
GOBO::Parsers::Parser | metacpan | ||
GOBO::Phylo::Branch | metacpan | ||
GOBO::Phylo::PhyloNode | metacpan | ||
GOBO::Phylo::PhyloTree | metacpan | ||
GOBO::RelationNode | metacpan | ||
GOBO::SimpleRDF::Indexes::SimpleRDFStatementIndex | metacpan | ||
GOBO::SimpleRDF::Indexes::SimpleRDFWrapper | metacpan | ||
GOBO::Statement | metacpan | ||
GOBO::Subset | metacpan | ||
GOBO::Synonym | metacpan | ||
GOBO::TermNode | metacpan | ||
GOBO::Util::GraphFunctions | metacpan | ||
GOBO::Util::LuceneIndexer | metacpan | ||
GOBO::Writers::CustomizableWriter | metacpan | ||
GOBO::Writers::GAFWriter | metacpan | ||
GOBO::Writers::OBOWriter | metacpan | ||
GOBO::Writers::OBOXMLWriter | metacpan | ||
GOBO::Writers::Writer | metacpan |