Kwalitee Issues

has_manifest

Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

no_generated_files

Remove the offending files/directories!

Error: pm_to_blib

has_human_readable_license

Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error: Cannot find MANIFEST in dist.

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: GOBO, GOBO::Doc::FAQ

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: GOBO-0.03/GOBO/Analysis/AnalysisEngine.pm -- Around line 55: Non-ASCII character seen before =encoding in '∩'. Assuming UTF-8 GOBO-0.03/GOBO/DBIC/GODBModel/Graph.pm -- Around line 23: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel/GraphT2T.pm -- Around line 24: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel/Query.pm -- Around line 31: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel/Resolver.pm -- Around line 28: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/DBIC/GODBModel.pm -- Around line 26: '=item' outside of any '=over' =over without closing =back GOBO-0.03/GOBO/InferenceEngine.pm -- Around line 260: Non-ASCII character seen before =encoding in '∩'. Assuming UTF-8 GOBO-0.03/GOBO/Node.pm -- Around line 59: =back without =over GOBO-0.03/GOBO/Parsers/OBOParser.pm -- Around line 8: =cut found outside a pod block. Skipping to next block. Around line 18: =cut found outside a pod block. Skipping to next block. GOBO-0.03/GOBO/Util/GraphFunctions.pm -- Around line 933: =cut found outside a pod block. Skipping to next block. GOBO-0.03/bin/compare-graphs.pl -- Around line 353: =cut found outside a pod block. Skipping to next block. Around line 377: =cut found outside a pod block. Skipping to next block. GOBO-0.03/bin/mapmaker.pl -- Around line 74: '=item' outside of any '=over' Around line 78: You forgot a '=back' before '=head2'

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: GOBO, GOBO::DBIC::GODBModel, GOBO::DBIC::GODBModel::Extension, GOBO::DBIC::GODBModel::Graph, GOBO::DBIC::GODBModel::GraphT2T, GOBO::DBIC::GODBModel::Query, GOBO::DBIC::GODBModel::Resolver, GOBO::DBIC::GODBModel::Schema, GOBO::DBIC::GODBModel::Schema::Association, GOBO::DBIC::GODBModel::Schema::DB, GOBO::DBIC::GODBModel::Schema::DBXRef, GOBO::DBIC::GODBModel::Schema::Evidence, GOBO::DBIC::GODBModel::Schema::EvidenceDBXRef, GOBO::DBIC::GODBModel::Schema::GeneProduct, GOBO::DBIC::GODBModel::Schema::GeneProductCount, GOBO::DBIC::GODBModel::Schema::GeneProductHomolset, GOBO::DBIC::GODBModel::Schema::GeneProductSeq, GOBO::DBIC::GODBModel::Schema::GeneProductSynonym, GOBO::DBIC::GODBModel::Schema::GraphPath, GOBO::DBIC::GODBModel::Schema::Homolset, GOBO::DBIC::GODBModel::Schema::InstanceData, GOBO::DBIC::GODBModel::Schema::Seq, GOBO::DBIC::GODBModel::Schema::SeqDBXRef, GOBO::DBIC::GODBModel::Schema::Species, GOBO::DBIC::GODBModel::Schema::Term, GOBO::DBIC::GODBModel::Schema::Term2Term, GOBO::DBIC::GODBModel::Schema::TermDBXRef, GOBO::DBIC::GODBModel::Schema::TermSynonym, GOBO::Doc::FAQ

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name Abstract Version View
GOBO 0.03 metacpan
GOBO::AmiGO::Indexes::AmiGOStatementIndex metacpan
GOBO::AmiGO::Indexes::AmiGOWrapper metacpan
GOBO::Analysis::AnalysisEngine metacpan
GOBO::Annotation metacpan
GOBO::Attributed metacpan
GOBO::Base metacpan
GOBO::Bridges::Bio::TreeBridge metacpan
GOBO::Bridges::Bridge metacpan
GOBO::ClassExpression metacpan
GOBO::ClassExpression::BooleanExpression metacpan
GOBO::ClassExpression::Complement metacpan
GOBO::ClassExpression::Intersection metacpan
GOBO::ClassExpression::RelationalExpression metacpan
GOBO::ClassExpression::Union metacpan
GOBO::ClassNode metacpan
GOBO::DB::AnnotationBulkLoader metacpan
GOBO::DBIC::GODBModel metacpan
GOBO::DBIC::GODBModel::Extension metacpan
GOBO::DBIC::GODBModel::Graph metacpan
GOBO::DBIC::GODBModel::GraphT2T metacpan
GOBO::DBIC::GODBModel::Query metacpan
GOBO::DBIC::GODBModel::Resolver metacpan
GOBO::DBIC::GODBModel::Schema metacpan
GOBO::DBIC::GODBModel::Schema::Association metacpan
GOBO::DBIC::GODBModel::Schema::DB metacpan
GOBO::DBIC::GODBModel::Schema::DBXRef metacpan
GOBO::DBIC::GODBModel::Schema::Evidence metacpan
GOBO::DBIC::GODBModel::Schema::EvidenceDBXRef metacpan
GOBO::DBIC::GODBModel::Schema::GeneProduct metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductCount metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductHomolset metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductSeq metacpan
GOBO::DBIC::GODBModel::Schema::GeneProductSynonym metacpan
GOBO::DBIC::GODBModel::Schema::GraphPath metacpan
GOBO::DBIC::GODBModel::Schema::Homolset metacpan
GOBO::DBIC::GODBModel::Schema::InstanceData metacpan
GOBO::DBIC::GODBModel::Schema::Seq metacpan
GOBO::DBIC::GODBModel::Schema::SeqDBXRef metacpan
GOBO::DBIC::GODBModel::Schema::Species metacpan
GOBO::DBIC::GODBModel::Schema::Term metacpan
GOBO::DBIC::GODBModel::Schema::Term2Term metacpan
GOBO::DBIC::GODBModel::Schema::TermDBXRef metacpan
GOBO::DBIC::GODBModel::Schema::TermSynonym metacpan
GOBO::Definable metacpan
GOBO::Doc::FAQ Frequently Asked Questions metacpan
GOBO::Error metacpan
GOBO::Evidence metacpan
GOBO::Formula metacpan
GOBO::Gene metacpan
GOBO::Graph metacpan
GOBO::Identified metacpan
GOBO::Indexes::NodeIndex metacpan
GOBO::Indexes::StatementIndex metacpan
GOBO::InferenceEngine metacpan
GOBO::InferenceEngine::GAFInferenceEngine metacpan
GOBO::InstanceNode metacpan
GOBO::Labeled metacpan
GOBO::LinkStatement metacpan
GOBO::LiteralStatement metacpan
GOBO::NegatedStatement metacpan
GOBO::Node metacpan
GOBO::Parsers::GAFParser metacpan
GOBO::Parsers::GraphParser metacpan
GOBO::Parsers::OBOParser metacpan
GOBO::Parsers::OBOParserDispatchHash metacpan
GOBO::Parsers::Parser metacpan
GOBO::Phylo::Branch metacpan
GOBO::Phylo::PhyloNode metacpan
GOBO::Phylo::PhyloTree metacpan
GOBO::RelationNode metacpan
GOBO::SimpleRDF::Indexes::SimpleRDFStatementIndex metacpan
GOBO::SimpleRDF::Indexes::SimpleRDFWrapper metacpan
GOBO::Statement metacpan
GOBO::Subset metacpan
GOBO::Synonym metacpan
GOBO::TermNode metacpan
GOBO::Util::GraphFunctions metacpan
GOBO::Util::LuceneIndexer metacpan
GOBO::Writers::CustomizableWriter metacpan
GOBO::Writers::GAFWriter metacpan
GOBO::Writers::OBOWriter metacpan
GOBO::Writers::OBOXMLWriter metacpan
GOBO::Writers::Writer metacpan

Other Files

META.yml metacpan
Makefile.PL metacpan
README metacpan