Bio-MAGE 20020902.6
- Released by
- JASONS
- Version
- Release Date
- 2003-11-12
- Kwalitee
- 118.75
- Core Kwalitee
- 84.38
- LINKS
Bio-MAGE 20020902.6
Kwalitee Issues
- has_readme
-
Add a README to the distribution. It should contain a quick description of your module and how to install it.
- has_human_readable_license
-
Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: classes
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-MAGE-20020902.6/MAGE/Array/Array.pm -- Around line 130: '=item' outside of any '=over' Around line 447: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/ArrayGroup.pm -- Around line 148: '=item' outside of any '=over' Around line 497: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/ArrayManufacture.pm -- Around line 126: '=item' outside of any '=over' Around line 436: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/ArrayManufactureDeviation.pm -- Around line 105: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/FeatureDefect.pm -- Around line 109: '=item' outside of any '=over' Around line 348: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/Fiducial.pm -- Around line 109: '=item' outside of any '=over' Around line 372: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/ManufactureLIMS.pm -- Around line 125: '=item' outside of any '=over' Around line 395: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/ManufactureLIMSBiomaterial.pm -- Around line 109: '=item' outside of any '=over' Around line 400: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/PositionDelta.pm -- Around line 110: '=item' outside of any '=over' Around line 346: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Array/ZoneDefect.pm -- Around line 109: '=item' outside of any '=over' Around line 348: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/ArrayDesign/ArrayDesign.pm -- Around line 137: '=item' outside of any '=over' Around line 447: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/ArrayDesign/CompositeGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 376: You forgot a '=back' before '=head2' Around line 385: You can't have =items (as at line 390) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/ArrayDesign/DesignElementGroup.pm -- Around line 127: '=item' outside of any '=over' Around line 397: You forgot a '=back' before '=head2' Around line 406: You can't have =items (as at line 411) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/ArrayDesign/FeatureGroup.pm -- Around line 126: '=item' outside of any '=over' Around line 451: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/ArrayDesign/PhysicalArrayDesign.pm -- Around line 105: '=item' outside of any '=over' Around line 427: You forgot a '=back' before '=head2' Around line 436: You can't have =items (as at line 441) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/ArrayDesign/ReporterGroup.pm -- Around line 102: '=item' outside of any '=over' Around line 377: You forgot a '=back' before '=head2' Around line 386: You can't have =items (as at line 391) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/ArrayDesign/Zone.pm -- Around line 126: '=item' outside of any '=over' Around line 432: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/ArrayDesign/ZoneGroup.pm -- Around line 126: '=item' outside of any '=over' Around line 396: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/ArrayDesign/ZoneLayout.pm -- Around line 118: '=item' outside of any '=over' Around line 370: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/AuditAndSecurity/Audit.pm -- Around line 110: '=item' outside of any '=over' Around line 370: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/AuditAndSecurity/Contact.pm -- Around line 140: '=item' outside of any '=over' Around line 447: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/AuditAndSecurity/Organization.pm -- Around line 101: '=item' outside of any '=over' Around line 410: You forgot a '=back' before '=head2' Around line 419: You can't have =items (as at line 424) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/AuditAndSecurity/Person.pm -- Around line 114: '=item' outside of any '=over' Around line 446: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/AuditAndSecurity/Security.pm -- Around line 105: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Around line 382: You can't have =items (as at line 387) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/AuditAndSecurity/SecurityGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BQS/BibliographicReference.pm -- Around line 143: '=item' outside of any '=over' Around line 467: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Base.pm -- Around line 43: '=item' outside of any '=over' Around line 203: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssay/BioAssay.pm -- Around line 128: '=item' outside of any '=over' Around line 398: You forgot a '=back' before '=head2' Around line 407: You can't have =items (as at line 412) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/BioAssayCreation.pm -- Around line 120: '=item' outside of any '=over' Around line 405: You forgot a '=back' before '=head2' Around line 414: You can't have =items (as at line 419) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/BioAssayTreatment.pm -- Around line 116: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/Channel.pm -- Around line 101: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/DerivedBioAssay.pm -- Around line 109: '=item' outside of any '=over' Around line 402: You forgot a '=back' before '=head2' Around line 411: You can't have =items (as at line 416) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/FeatureExtraction.pm -- Around line 105: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/Hybridization.pm -- Around line 94: '=item' outside of any '=over' Around line 377: You forgot a '=back' before '=head2' Around line 386: You can't have =items (as at line 391) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/Image.pm -- Around line 111: '=item' outside of any '=over' Around line 386: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssay/ImageAcquisition.pm -- Around line 101: '=item' outside of any '=over' Around line 384: You forgot a '=back' before '=head2' Around line 393: You can't have =items (as at line 398) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/MeasuredBioAssay.pm -- Around line 105: '=item' outside of any '=over' Around line 389: You forgot a '=back' before '=head2' Around line 398: You can't have =items (as at line 403) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssay/PhysicalBioAssay.pm -- Around line 109: '=item' outside of any '=over' Around line 402: You forgot a '=back' before '=head2' Around line 411: You can't have =items (as at line 416) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/BioAssayData.pm -- Around line 133: '=item' outside of any '=over' Around line 429: You forgot a '=back' before '=head2' Around line 438: You can't have =items (as at line 443) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/BioAssayDatum.pm -- Around line 114: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssayData/BioAssayDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/BioAssayMap.pm -- Around line 105: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/BioAssayMapping.pm -- Around line 101: '=item' outside of any '=over' Around line 322: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssayData/BioDataCube.pm -- Around line 105: '=item' outside of any '=over' Around line 333: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssayData/BioDataTuples.pm -- Around line 101: '=item' outside of any '=over' Around line 322: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssayData/BioDataValues.pm -- Around line 117: '=item' outside of any '=over' Around line 331: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssayData/CompositeSequenceDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/DerivedBioAssayData.pm -- Around line 101: '=item' outside of any '=over' Around line 400: You forgot a '=back' before '=head2' Around line 409: You can't have =items (as at line 414) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/DesignElementDimension.pm -- Around line 120: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Around line 382: You can't have =items (as at line 387) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/DesignElementMap.pm -- Around line 120: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/DesignElementMapping.pm -- Around line 101: '=item' outside of any '=over' Around line 322: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssayData/FeatureDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/MeasuredBioAssayData.pm -- Around line 94: '=item' outside of any '=over' Around line 385: You forgot a '=back' before '=head2' Around line 394: You can't have =items (as at line 399) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/QuantitationTypeDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/QuantitationTypeMap.pm -- Around line 105: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/QuantitationTypeMapping.pm -- Around line 101: '=item' outside of any '=over' Around line 322: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioAssayData/ReporterDimension.pm -- Around line 101: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioAssayData/Transformation.pm -- Around line 117: '=item' outside of any '=over' Around line 420: You forgot a '=back' before '=head2' Around line 429: You can't have =items (as at line 434) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioEvent/BioEvent.pm -- Around line 133: '=item' outside of any '=over' Around line 397: You forgot a '=back' before '=head2' Around line 406: You can't have =items (as at line 411) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioEvent/Map.pm -- Around line 120: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioMaterial/BioMaterial.pm -- Around line 133: '=item' outside of any '=over' Around line 421: You forgot a '=back' before '=head2' Around line 430: You can't have =items (as at line 435) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioMaterial/BioMaterialMeasurement.pm -- Around line 105: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioMaterial/BioSample.pm -- Around line 101: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioMaterial/BioSource.pm -- Around line 101: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioMaterial/Compound.pm -- Around line 114: '=item' outside of any '=over' Around line 398: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioMaterial/CompoundMeasurement.pm -- Around line 105: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioMaterial/LabeledExtract.pm -- Around line 101: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/BioMaterial/Treatment.pm -- Around line 118: '=item' outside of any '=over' Around line 419: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioSequence/BioSequence.pm -- Around line 138: '=item' outside of any '=over' Around line 473: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioSequence/SeqFeature.pm -- Around line 106: '=item' outside of any '=over' Around line 358: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioSequence/SeqFeatureLocation.pm -- Around line 110: '=item' outside of any '=over' Around line 347: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/BioSequence/SequencePosition.pm -- Around line 119: '=item' outside of any '=over' Around line 348: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Describable.pm -- Around line 154: '=item' outside of any '=over' Around line 403: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Description/Database.pm -- Around line 110: '=item' outside of any '=over' Around line 384: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Description/DatabaseEntry.pm -- Around line 118: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Description/Description.pm -- Around line 122: '=item' outside of any '=over' Around line 409: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Description/ExternalReference.pm -- Around line 113: '=item' outside of any '=over' Around line 357: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Description/OntologyEntry.pm -- Around line 118: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/DesignElement/CompositeCompositeMap.pm -- Around line 105: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/CompositePosition.pm -- Around line 105: '=item' outside of any '=over' Around line 349: You forgot a '=back' before '=head2' Around line 358: You can't have =items (as at line 363) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/CompositeSequence.pm -- Around line 110: '=item' outside of any '=over' Around line 395: You forgot a '=back' before '=head2' Around line 404: You can't have =items (as at line 409) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/DesignElement.pm -- Around line 124: '=item' outside of any '=over' Around line 385: You forgot a '=back' before '=head2' Around line 394: You can't have =items (as at line 399) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/Feature.pm -- Around line 122: '=item' outside of any '=over' Around line 434: You forgot a '=back' before '=head2' Around line 443: You can't have =items (as at line 448) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/FeatureInformation.pm -- Around line 105: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/DesignElement/FeatureLocation.pm -- Around line 105: '=item' outside of any '=over' Around line 333: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/DesignElement/FeatureReporterMap.pm -- Around line 105: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/MismatchInformation.pm -- Around line 109: '=item' outside of any '=over' Around line 345: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/DesignElement/Position.pm -- Around line 110: '=item' outside of any '=over' Around line 346: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/DesignElement/Reporter.pm -- Around line 115: '=item' outside of any '=over' Around line 409: You forgot a '=back' before '=head2' Around line 418: You can't have =items (as at line 423) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/ReporterCompositeMap.pm -- Around line 105: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Around line 390: You can't have =items (as at line 395) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/DesignElement/ReporterPosition.pm -- Around line 105: '=item' outside of any '=over' Around line 349: You forgot a '=back' before '=head2' Around line 358: You can't have =items (as at line 363) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/Experiment/Experiment.pm -- Around line 117: '=item' outside of any '=over' Around line 412: You forgot a '=back' before '=head2' Around line 421: You can't have =items (as at line 426) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/Experiment/ExperimentDesign.pm -- Around line 121: '=item' outside of any '=over' Around line 411: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Experiment/ExperimentalFactor.pm -- Around line 109: '=item' outside of any '=over' Around line 386: You forgot a '=back' before '=head2' Around line 395: You can't have =items (as at line 400) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/Experiment/FactorValue.pm -- Around line 109: '=item' outside of any '=over' Around line 386: You forgot a '=back' before '=head2' Around line 395: You can't have =items (as at line 400) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/Extendable.pm -- Around line 184: '=item' outside of any '=over' Around line 423: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm -- Around line 105: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Around line 382: You can't have =items (as at line 387) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/HigherLevelAnalysis/Node.pm -- Around line 109: '=item' outside of any '=over' Around line 372: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/HigherLevelAnalysis/NodeContents.pm -- Around line 109: '=item' outside of any '=over' Around line 372: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/HigherLevelAnalysis/NodeValue.pm -- Around line 118: '=item' outside of any '=over' Around line 372: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Identifiable.pm -- Around line 205: '=item' outside of any '=over' Around line 485: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/ConcentrationUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/DistanceUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/MassUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/Measurement.pm -- Around line 118: '=item' outside of any '=over' Around line 370: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/QuantityUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/TemperatureUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/TimeUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/Unit.pm -- Around line 136: '=item' outside of any '=over' Around line 362: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Measurement/VolumeUnit.pm -- Around line 101: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/NameValueType.pm -- Around line 99: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/Hardware.pm -- Around line 118: '=item' outside of any '=over' Around line 425: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/HardwareApplication.pm -- Around line 106: '=item' outside of any '=over' Around line 366: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/Parameter.pm -- Around line 105: '=item' outside of any '=over' Around line 373: You forgot a '=back' before '=head2' Around line 382: You can't have =items (as at line 387) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/Protocol/ParameterValue.pm -- Around line 106: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/Parameterizable.pm -- Around line 128: '=item' outside of any '=over' Around line 396: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/ParameterizableApplication.pm -- Around line 124: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/Protocol.pm -- Around line 118: '=item' outside of any '=over' Around line 425: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/ProtocolApplication.pm -- Around line 118: '=item' outside of any '=over' Around line 405: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/Protocol/Software.pm -- Around line 113: '=item' outside of any '=over' Around line 414: You forgot a '=back' before '=head2' Around line 423: You can't have =items (as at line 428) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/Protocol/SoftwareApplication.pm -- Around line 110: '=item' outside of any '=over' Around line 378: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/QuantitationType/ConfidenceIndicator.pm -- Around line 124: '=item' outside of any '=over' Around line 432: You forgot a '=back' before '=head2' Around line 441: You can't have =items (as at line 446) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/DerivedSignal.pm -- Around line 94: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/Error.pm -- Around line 94: '=item' outside of any '=over' Around line 400: You forgot a '=back' before '=head2' Around line 409: You can't have =items (as at line 414) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/ExpectedValue.pm -- Around line 94: '=item' outside of any '=over' Around line 400: You forgot a '=back' before '=head2' Around line 409: You can't have =items (as at line 414) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/Failed.pm -- Around line 94: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/MeasuredSignal.pm -- Around line 94: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/PValue.pm -- Around line 94: '=item' outside of any '=over' Around line 400: You forgot a '=back' before '=head2' Around line 409: You can't have =items (as at line 414) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/PresentAbsent.pm -- Around line 94: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/QuantitationType.pm -- Around line 138: '=item' outside of any '=over' Around line 441: You forgot a '=back' before '=head2' Bio-MAGE-20020902.6/MAGE/QuantitationType/Ratio.pm -- Around line 94: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/SpecializedQuantitationType.pm -- Around line 94: '=item' outside of any '=over' Around line 392: You forgot a '=back' before '=head2' Around line 401: You can't have =items (as at line 406) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/QuantitationType/StandardQuantitationType.pm -- Around line 129: '=item' outside of any '=over' Around line 432: You forgot a '=back' before '=head2' Around line 441: You can't have =items (as at line 446) unless the first thing after the =over is an =item Bio-MAGE-20020902.6/MAGE/SQLUtils.pm -- Around line 249: '=item' outside of any '=over' =over without closing =back Bio-MAGE-20020902.6/MAGE/XML/Handler.pm -- Around line 145: '=item' outside of any '=over' =over without closing =back Bio-MAGE-20020902.6/MAGE/XML/Reader.pm -- Around line 169: You forgot a '=back' before '=head2' Around line 187: '=item' outside of any '=over' Bio-MAGE-20020902.6/MAGE/XML/Writer.pm -- Around line 151: '=item' outside of any '=over' Around line 645: You forgot a '=back' before '=head1' Around line 649: =over without closing =back
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- proper_libs
-
Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.
Error: MAGE.pm, MAGE/Array.pm, MAGE/Array/Array.pm, MAGE/Array/ArrayGroup.pm, MAGE/Array/ArrayManufacture.pm, MAGE/Array/ArrayManufactureDeviation.pm, MAGE/Array/FeatureDefect.pm, MAGE/Array/Fiducial.pm, MAGE/Array/ManufactureLIMS.pm, MAGE/Array/ManufactureLIMSBiomaterial.pm, MAGE/Array/PositionDelta.pm, MAGE/Array/ZoneDefect.pm, MAGE/ArrayDesign.pm, MAGE/ArrayDesign/ArrayDesign.pm, MAGE/ArrayDesign/CompositeGroup.pm, MAGE/ArrayDesign/DesignElementGroup.pm, MAGE/ArrayDesign/FeatureGroup.pm, MAGE/ArrayDesign/PhysicalArrayDesign.pm, MAGE/ArrayDesign/ReporterGroup.pm, MAGE/ArrayDesign/Zone.pm, MAGE/ArrayDesign/ZoneGroup.pm, MAGE/ArrayDesign/ZoneLayout.pm, MAGE/Association.pm, MAGE/AuditAndSecurity.pm, MAGE/AuditAndSecurity/Audit.pm, MAGE/AuditAndSecurity/Contact.pm, MAGE/AuditAndSecurity/Organization.pm, MAGE/AuditAndSecurity/Person.pm, MAGE/AuditAndSecurity/Security.pm, MAGE/AuditAndSecurity/SecurityGroup.pm, MAGE/BQS.pm, MAGE/BQS/BibliographicReference.pm, MAGE/Base.pm, MAGE/BioAssay.pm, MAGE/BioAssay/BioAssay.pm, MAGE/BioAssay/BioAssayCreation.pm, MAGE/BioAssay/BioAssayTreatment.pm, MAGE/BioAssay/Channel.pm, MAGE/BioAssay/DerivedBioAssay.pm, MAGE/BioAssay/FeatureExtraction.pm, MAGE/BioAssay/Hybridization.pm, MAGE/BioAssay/Image.pm, MAGE/BioAssay/ImageAcquisition.pm, MAGE/BioAssay/MeasuredBioAssay.pm, MAGE/BioAssay/PhysicalBioAssay.pm, MAGE/BioAssayData.pm, MAGE/BioAssayData/BioAssayData.pm, MAGE/BioAssayData/BioAssayDatum.pm, MAGE/BioAssayData/BioAssayDimension.pm, MAGE/BioAssayData/BioAssayMap.pm, MAGE/BioAssayData/BioAssayMapping.pm, MAGE/BioAssayData/BioDataCube.pm, MAGE/BioAssayData/BioDataTuples.pm, MAGE/BioAssayData/BioDataValues.pm, MAGE/BioAssayData/CompositeSequenceDimension.pm, MAGE/BioAssayData/DerivedBioAssayData.pm, MAGE/BioAssayData/DesignElementDimension.pm, MAGE/BioAssayData/DesignElementMap.pm, MAGE/BioAssayData/DesignElementMapping.pm, MAGE/BioAssayData/FeatureDimension.pm, MAGE/BioAssayData/MeasuredBioAssayData.pm, MAGE/BioAssayData/QuantitationTypeDimension.pm, MAGE/BioAssayData/QuantitationTypeMap.pm, MAGE/BioAssayData/QuantitationTypeMapping.pm, MAGE/BioAssayData/ReporterDimension.pm, MAGE/BioAssayData/Transformation.pm, MAGE/BioEvent.pm, MAGE/BioEvent/BioEvent.pm, MAGE/BioEvent/Map.pm, MAGE/BioMaterial.pm, MAGE/BioMaterial/BioMaterial.pm, MAGE/BioMaterial/BioMaterialMeasurement.pm, MAGE/BioMaterial/BioSample.pm, MAGE/BioMaterial/BioSource.pm, MAGE/BioMaterial/Compound.pm, MAGE/BioMaterial/CompoundMeasurement.pm, MAGE/BioMaterial/LabeledExtract.pm, MAGE/BioMaterial/Treatment.pm, MAGE/BioSequence.pm, MAGE/BioSequence/BioSequence.pm, MAGE/BioSequence/SeqFeature.pm, MAGE/BioSequence/SeqFeatureLocation.pm, MAGE/BioSequence/SequencePosition.pm, MAGE/Describable.pm, MAGE/Description.pm, MAGE/Description/Database.pm, MAGE/Description/DatabaseEntry.pm, MAGE/Description/Description.pm, MAGE/Description/ExternalReference.pm, MAGE/Description/OntologyEntry.pm, MAGE/DesignElement.pm, MAGE/DesignElement/CompositeCompositeMap.pm, MAGE/DesignElement/CompositePosition.pm, MAGE/DesignElement/CompositeSequence.pm, MAGE/DesignElement/DesignElement.pm, MAGE/DesignElement/Feature.pm, MAGE/DesignElement/FeatureInformation.pm, MAGE/DesignElement/FeatureLocation.pm, MAGE/DesignElement/FeatureReporterMap.pm, MAGE/DesignElement/MismatchInformation.pm, MAGE/DesignElement/Position.pm, MAGE/DesignElement/Reporter.pm, MAGE/DesignElement/ReporterCompositeMap.pm, MAGE/DesignElement/ReporterPosition.pm, MAGE/XML/Handler/DocumentHandler.pm, MAGE/Experiment.pm, MAGE/Experiment/Experiment.pm, MAGE/Experiment/ExperimentDesign.pm, MAGE/Experiment/ExperimentalFactor.pm, MAGE/Experiment/FactorValue.pm, MAGE/Extendable.pm, MAGE/HigherLevelAnalysis.pm, MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm, MAGE/HigherLevelAnalysis/Node.pm, MAGE/HigherLevelAnalysis/NodeContents.pm, MAGE/HigherLevelAnalysis/NodeValue.pm, MAGE/Identifiable.pm, MAGE/Measurement.pm, MAGE/Measurement/ConcentrationUnit.pm, MAGE/Measurement/DistanceUnit.pm, MAGE/Measurement/MassUnit.pm, MAGE/Measurement/Measurement.pm, MAGE/Measurement/QuantityUnit.pm, MAGE/Measurement/TemperatureUnit.pm, MAGE/Measurement/TimeUnit.pm, MAGE/Measurement/Unit.pm, MAGE/Measurement/VolumeUnit.pm, MAGE/NameValueType.pm, MAGE/Protocol.pm, MAGE/Protocol/Hardware.pm, MAGE/Protocol/HardwareApplication.pm, MAGE/Protocol/Parameter.pm, MAGE/Protocol/ParameterValue.pm, MAGE/Protocol/Parameterizable.pm, MAGE/Protocol/ParameterizableApplication.pm, MAGE/Protocol/Protocol.pm, MAGE/Protocol/ProtocolApplication.pm, MAGE/Protocol/Software.pm, MAGE/Protocol/SoftwareApplication.pm, MAGE/QuantitationType.pm, MAGE/QuantitationType/ConfidenceIndicator.pm, MAGE/QuantitationType/DerivedSignal.pm, MAGE/QuantitationType/Error.pm, MAGE/QuantitationType/ExpectedValue.pm, MAGE/QuantitationType/Failed.pm, MAGE/QuantitationType/MeasuredSignal.pm, MAGE/QuantitationType/PValue.pm, MAGE/QuantitationType/PresentAbsent.pm, MAGE/QuantitationType/QuantitationType.pm, MAGE/QuantitationType/Ratio.pm, MAGE/QuantitationType/SpecializedQuantitationType.pm, MAGE/QuantitationType/StandardQuantitationType.pm, MAGE/SQLUtils.pm, MAGE/XML/Handler.pm, MAGE/XML/Handler/ContentHandler.pm, MAGE/XML/Handler/ObjectHandler/SQL.pm, MAGE/XML/Handler/ObjectHandlerI.pm, MAGE/XML/Reader.pm, MAGE/XML/Writer.pm, MAGE/XMLUtils.pm, classes.pm
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::MAGE, Bio::MAGE::Array, Bio::MAGE::Array::Array, Bio::MAGE::Array::ArrayGroup, Bio::MAGE::Array::ArrayManufacture, Bio::MAGE::Array::ArrayManufactureDeviation, Bio::MAGE::Array::FeatureDefect, Bio::MAGE::Array::Fiducial, Bio::MAGE::Array::ManufactureLIMS, Bio::MAGE::Array::ManufactureLIMSBiomaterial, Bio::MAGE::Array::PositionDelta, Bio::MAGE::Array::ZoneDefect, Bio::MAGE::ArrayDesign, Bio::MAGE::ArrayDesign::ArrayDesign, Bio::MAGE::ArrayDesign::CompositeGroup, Bio::MAGE::ArrayDesign::DesignElementGroup, Bio::MAGE::ArrayDesign::FeatureGroup, Bio::MAGE::ArrayDesign::PhysicalArrayDesign, Bio::MAGE::ArrayDesign::ReporterGroup, Bio::MAGE::ArrayDesign::Zone, Bio::MAGE::ArrayDesign::ZoneGroup, Bio::MAGE::ArrayDesign::ZoneLayout, Bio::MAGE::Association, Bio::MAGE::AuditAndSecurity, Bio::MAGE::AuditAndSecurity::Audit, Bio::MAGE::AuditAndSecurity::Contact, Bio::MAGE::AuditAndSecurity::Organization, Bio::MAGE::AuditAndSecurity::Person, Bio::MAGE::AuditAndSecurity::Security, Bio::MAGE::AuditAndSecurity::SecurityGroup, Bio::MAGE::BQS, Bio::MAGE::BQS::BibliographicReference, Bio::MAGE::Base, Bio::MAGE::BioAssay, Bio::MAGE::BioAssay::BioAssay, Bio::MAGE::BioAssay::BioAssayCreation, Bio::MAGE::BioAssay::BioAssayTreatment, Bio::MAGE::BioAssay::Channel, Bio::MAGE::BioAssay::DerivedBioAssay, Bio::MAGE::BioAssay::FeatureExtraction, Bio::MAGE::BioAssay::Hybridization, Bio::MAGE::BioAssay::Image, Bio::MAGE::BioAssay::ImageAcquisition, Bio::MAGE::BioAssay::MeasuredBioAssay, Bio::MAGE::BioAssay::PhysicalBioAssay, Bio::MAGE::BioAssayData, Bio::MAGE::BioAssayData::BioAssayData, Bio::MAGE::BioAssayData::BioAssayDatum, Bio::MAGE::BioAssayData::BioAssayDimension, Bio::MAGE::BioAssayData::BioAssayMap, Bio::MAGE::BioAssayData::BioAssayMapping, Bio::MAGE::BioAssayData::BioDataCube, Bio::MAGE::BioAssayData::BioDataTuples, Bio::MAGE::BioAssayData::BioDataValues, Bio::MAGE::BioAssayData::CompositeSequenceDimension, Bio::MAGE::BioAssayData::DerivedBioAssayData, Bio::MAGE::BioAssayData::DesignElementDimension, Bio::MAGE::BioAssayData::DesignElementMap, Bio::MAGE::BioAssayData::DesignElementMapping, Bio::MAGE::BioAssayData::FeatureDimension, Bio::MAGE::BioAssayData::MeasuredBioAssayData, Bio::MAGE::BioAssayData::QuantitationTypeDimension, Bio::MAGE::BioAssayData::QuantitationTypeMap, Bio::MAGE::BioAssayData::QuantitationTypeMapping, Bio::MAGE::BioAssayData::ReporterDimension, Bio::MAGE::BioAssayData::Transformation, Bio::MAGE::BioEvent, Bio::MAGE::BioEvent::BioEvent, Bio::MAGE::BioEvent::Map, Bio::MAGE::BioMaterial, Bio::MAGE::BioMaterial::BioMaterial, Bio::MAGE::BioMaterial::BioMaterialMeasurement, Bio::MAGE::BioMaterial::BioSample, Bio::MAGE::BioMaterial::BioSource, Bio::MAGE::BioMaterial::Compound, Bio::MAGE::BioMaterial::CompoundMeasurement, Bio::MAGE::BioMaterial::LabeledExtract, Bio::MAGE::BioMaterial::Treatment, Bio::MAGE::BioSequence, Bio::MAGE::BioSequence::BioSequence, Bio::MAGE::BioSequence::SeqFeature, Bio::MAGE::BioSequence::SeqFeatureLocation, Bio::MAGE::BioSequence::SequencePosition, Bio::MAGE::Describable, Bio::MAGE::Description, Bio::MAGE::Description::Database, Bio::MAGE::Description::DatabaseEntry, Bio::MAGE::Description::Description, Bio::MAGE::Description::ExternalReference, Bio::MAGE::Description::OntologyEntry, Bio::MAGE::DesignElement, Bio::MAGE::DesignElement::CompositeCompositeMap, Bio::MAGE::DesignElement::CompositePosition, Bio::MAGE::DesignElement::CompositeSequence, Bio::MAGE::DesignElement::DesignElement, Bio::MAGE::DesignElement::Feature, Bio::MAGE::DesignElement::FeatureInformation, Bio::MAGE::DesignElement::FeatureLocation, Bio::MAGE::DesignElement::FeatureReporterMap, Bio::MAGE::DesignElement::MismatchInformation, Bio::MAGE::DesignElement::Position, Bio::MAGE::DesignElement::Reporter, Bio::MAGE::DesignElement::ReporterCompositeMap, Bio::MAGE::DesignElement::ReporterPosition, Bio::MAGE::DocumentHandler, Bio::MAGE::Experiment, Bio::MAGE::Experiment::Experiment, Bio::MAGE::Experiment::ExperimentDesign, Bio::MAGE::Experiment::ExperimentalFactor, Bio::MAGE::Experiment::FactorValue, Bio::MAGE::Extendable, Bio::MAGE::HigherLevelAnalysis, Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster, Bio::MAGE::HigherLevelAnalysis::Node, Bio::MAGE::HigherLevelAnalysis::NodeContents, Bio::MAGE::HigherLevelAnalysis::NodeValue, Bio::MAGE::Identifiable, Bio::MAGE::Measurement, Bio::MAGE::Measurement::ConcentrationUnit, Bio::MAGE::Measurement::DistanceUnit, Bio::MAGE::Measurement::MassUnit, Bio::MAGE::Measurement::Measurement, Bio::MAGE::Measurement::QuantityUnit, Bio::MAGE::Measurement::TemperatureUnit, Bio::MAGE::Measurement::TimeUnit, Bio::MAGE::Measurement::Unit, Bio::MAGE::Measurement::VolumeUnit, Bio::MAGE::NameValueType, Bio::MAGE::Protocol, Bio::MAGE::Protocol::Hardware, Bio::MAGE::Protocol::HardwareApplication, Bio::MAGE::Protocol::Parameter, Bio::MAGE::Protocol::ParameterValue, Bio::MAGE::Protocol::Parameterizable, Bio::MAGE::Protocol::ParameterizableApplication, Bio::MAGE::Protocol::Protocol, Bio::MAGE::Protocol::ProtocolApplication, Bio::MAGE::Protocol::Software, Bio::MAGE::Protocol::SoftwareApplication, Bio::MAGE::QuantitationType, Bio::MAGE::QuantitationType::ConfidenceIndicator, Bio::MAGE::QuantitationType::DerivedSignal, Bio::MAGE::QuantitationType::Error, Bio::MAGE::QuantitationType::ExpectedValue, Bio::MAGE::QuantitationType::Failed, Bio::MAGE::QuantitationType::MeasuredSignal, Bio::MAGE::QuantitationType::PValue, Bio::MAGE::QuantitationType::PresentAbsent, Bio::MAGE::QuantitationType::QuantitationType, Bio::MAGE::QuantitationType::Ratio, Bio::MAGE::QuantitationType::SpecializedQuantitationType, Bio::MAGE::QuantitationType::StandardQuantitationType, Bio::MAGE::SQLWriter, Bio::MAGE::XML::Handler, Bio::MAGE::XML::Handler::ContentHandler, Bio::MAGE::XML::Handler::ObjectHandler::SQL, Bio::MAGE::XML::Handler::ObjectHandlerI, Bio::MAGE::XML::Reader, Bio::MAGE::XML::Writer, Bio::MAGE::XMLUtils, classes
- no_invalid_versions
-
Fix the version numbers so that version::is_lax($version) returns true.
Error:
- MAGE/Association.pm: HASH(0x55c8d1877718)
- MAGE/Base.pm: HASH(0x55c8d40a2010)
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 0.99,20020902.6
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::MAGE | Container module for classes in the MAGE MAGE package | 20020902.6 | metacpan |
| Bio::MAGE::Array | Container module for classes in the MAGE Array package | 20020902.6 | metacpan |
| Bio::MAGE::Array::Array | 20020902.6 | metacpan | |
| Bio::MAGE::Array::ArrayGroup | 20020902.6 | metacpan | |
| Bio::MAGE::Array::ArrayManufacture | 20020902.6 | metacpan | |
| Bio::MAGE::Array::ArrayManufactureDeviation | 20020902.6 | metacpan | |
| Bio::MAGE::Array::FeatureDefect | 20020902.6 | metacpan | |
| Bio::MAGE::Array::Fiducial | 20020902.6 | metacpan | |
| Bio::MAGE::Array::ManufactureLIMS | 20020902.6 | metacpan | |
| Bio::MAGE::Array::ManufactureLIMSBiomaterial | 20020902.6 | metacpan | |
| Bio::MAGE::Array::PositionDelta | 20020902.6 | metacpan | |
| Bio::MAGE::Array::ZoneDefect | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign | Container module for classes in the MAGE ArrayDesign package | 20020902.6 | metacpan |
| Bio::MAGE::ArrayDesign::ArrayDesign | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::CompositeGroup | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::DesignElementGroup | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::FeatureGroup | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::PhysicalArrayDesign | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::ReporterGroup | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::Zone | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::ZoneGroup | 20020902.6 | metacpan | |
| Bio::MAGE::ArrayDesign::ZoneLayout | 20020902.6 | metacpan | |
| Bio::MAGE::AuditAndSecurity | Container module for classes in the MAGE AuditAndSecurity package | 20020902.6 | metacpan |
| Bio::MAGE::AuditAndSecurity::Audit | 20020902.6 | metacpan | |
| Bio::MAGE::AuditAndSecurity::Contact | 20020902.6 | metacpan | |
| Bio::MAGE::AuditAndSecurity::Organization | 20020902.6 | metacpan | |
| Bio::MAGE::AuditAndSecurity::Person | 20020902.6 | metacpan | |
| Bio::MAGE::AuditAndSecurity::Security | 20020902.6 | metacpan | |
| Bio::MAGE::AuditAndSecurity::SecurityGroup | 20020902.6 | metacpan | |
| Bio::MAGE::BQS | Container module for classes in the MAGE BQS package | 20020902.6 | metacpan |
| Bio::MAGE::BQS::BibliographicReference | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay | Container module for classes in the MAGE BioAssay package | 20020902.6 | metacpan |
| Bio::MAGE::BioAssay::BioAssay | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::BioAssayCreation | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::BioAssayTreatment | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::Channel | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::DerivedBioAssay | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::FeatureExtraction | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::Hybridization | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::Image | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::ImageAcquisition | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::MeasuredBioAssay | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssay::PhysicalBioAssay | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData | Container module for classes in the MAGE BioAssayData package | 20020902.6 | metacpan |
| Bio::MAGE::BioAssayData::BioAssayData | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::BioAssayDatum | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::BioAssayDimension | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::BioAssayMap | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::BioAssayMapping | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::BioDataCube | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::BioDataTuples | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::BioDataValues | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::CompositeSequenceDimension | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::DerivedBioAssayData | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::DesignElementDimension | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::DesignElementMap | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::DesignElementMapping | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::FeatureDimension | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::MeasuredBioAssayData | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::QuantitationTypeDimension | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::QuantitationTypeMap | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::QuantitationTypeMapping | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::ReporterDimension | 20020902.6 | metacpan | |
| Bio::MAGE::BioAssayData::Transformation | 20020902.6 | metacpan | |
| Bio::MAGE::BioEvent | Container module for classes in the MAGE BioEvent package | 20020902.6 | metacpan |
| Bio::MAGE::BioEvent::BioEvent | 20020902.6 | metacpan | |
| Bio::MAGE::BioEvent::Map | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial | Container module for classes in the MAGE BioMaterial package | 20020902.6 | metacpan |
| Bio::MAGE::BioMaterial::BioMaterial | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial::BioMaterialMeasurement | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial::BioSample | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial::BioSource | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial::Compound | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial::CompoundMeasurement | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial::LabeledExtract | 20020902.6 | metacpan | |
| Bio::MAGE::BioMaterial::Treatment | 20020902.6 | metacpan | |
| Bio::MAGE::BioSequence | Container module for classes in the MAGE BioSequence package | 20020902.6 | metacpan |
| Bio::MAGE::BioSequence::BioSequence | 20020902.6 | metacpan | |
| Bio::MAGE::BioSequence::SeqFeature | 20020902.6 | metacpan | |
| Bio::MAGE::BioSequence::SeqFeatureLocation | 20020902.6 | metacpan | |
| Bio::MAGE::BioSequence::SequencePosition | 20020902.6 | metacpan | |
| Bio::MAGE::Describable | 20020902.6 | metacpan | |
| Bio::MAGE::Description | Container module for classes in the MAGE Description package | 20020902.6 | metacpan |
| Bio::MAGE::Description::Database | 20020902.6 | metacpan | |
| Bio::MAGE::Description::DatabaseEntry | 20020902.6 | metacpan | |
| Bio::MAGE::Description::Description | 20020902.6 | metacpan | |
| Bio::MAGE::Description::ExternalReference | 20020902.6 | metacpan | |
| Bio::MAGE::Description::OntologyEntry | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement | Container module for classes in the MAGE DesignElement package | 20020902.6 | metacpan |
| Bio::MAGE::DesignElement::CompositeCompositeMap | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::CompositePosition | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::CompositeSequence | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::DesignElement | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::Feature | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::FeatureInformation | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::FeatureLocation | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::FeatureReporterMap | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::MismatchInformation | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::Position | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::Reporter | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::ReporterCompositeMap | 20020902.6 | metacpan | |
| Bio::MAGE::DesignElement::ReporterPosition | 20020902.6 | metacpan | |
| Bio::MAGE::DocumentHandler | metacpan | ||
| Bio::MAGE::Experiment | Container module for classes in the MAGE Experiment package | 20020902.6 | metacpan |
| Bio::MAGE::Experiment::Experiment | 20020902.6 | metacpan | |
| Bio::MAGE::Experiment::ExperimentDesign | 20020902.6 | metacpan | |
| Bio::MAGE::Experiment::ExperimentalFactor | 20020902.6 | metacpan | |
| Bio::MAGE::Experiment::FactorValue | 20020902.6 | metacpan | |
| Bio::MAGE::Extendable | 20020902.6 | metacpan | |
| Bio::MAGE::HigherLevelAnalysis | Container module for classes in the MAGE HigherLevelAnalysis package | 20020902.6 | metacpan |
| Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster | 20020902.6 | metacpan | |
| Bio::MAGE::HigherLevelAnalysis::Node | 20020902.6 | metacpan | |
| Bio::MAGE::HigherLevelAnalysis::NodeContents | 20020902.6 | metacpan | |
| Bio::MAGE::HigherLevelAnalysis::NodeValue | 20020902.6 | metacpan | |
| Bio::MAGE::Identifiable | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement | Container module for classes in the MAGE Measurement package | 20020902.6 | metacpan |
| Bio::MAGE::Measurement::ConcentrationUnit | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::DistanceUnit | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::MassUnit | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::Measurement | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::QuantityUnit | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::TemperatureUnit | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::TimeUnit | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::Unit | 20020902.6 | metacpan | |
| Bio::MAGE::Measurement::VolumeUnit | 20020902.6 | metacpan | |
| Bio::MAGE::NameValueType | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol | Container module for classes in the MAGE Protocol package | 20020902.6 | metacpan |
| Bio::MAGE::Protocol::Hardware | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::HardwareApplication | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::Parameter | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::ParameterValue | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::Parameterizable | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::ParameterizableApplication | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::Protocol | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::ProtocolApplication | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::Software | 20020902.6 | metacpan | |
| Bio::MAGE::Protocol::SoftwareApplication | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType | Container module for classes in the MAGE QuantitationType package | 20020902.6 | metacpan |
| Bio::MAGE::QuantitationType::ConfidenceIndicator | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::DerivedSignal | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::Error | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::ExpectedValue | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::Failed | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::MeasuredSignal | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::PValue | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::PresentAbsent | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::QuantitationType | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::Ratio | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::SpecializedQuantitationType | 20020902.6 | metacpan | |
| Bio::MAGE::QuantitationType::StandardQuantitationType | 20020902.6 | metacpan | |
| Bio::MAGE::SQLWriter | a module for exporting MAGE-OM objects to a database | metacpan | |
| Bio::MAGE::XML::Handler | metacpan | ||
| Bio::MAGE::XML::Handler::ContentHandler | metacpan | ||
| Bio::MAGE::XML::Handler::ObjectHandler::SQL | DESCRIPTION of Object | metacpan | |
| Bio::MAGE::XML::Handler::ObjectHandlerI | Abstract class for processing Bio::MAGE objects. | 0.99 | metacpan |
| Bio::MAGE::XML::Reader | a module for exporting MAGE-ML | metacpan | |
| Bio::MAGE::XML::Writer | a module for exporting MAGE-ML | metacpan | |
| Bio::MAGE::XMLUtils | metacpan |