Bio::MAGETAB |
A data model and utility API for the MAGE-TAB format. |
1.23 |
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Bio::MAGETAB::ArrayDesign |
MAGE-TAB array design class |
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Bio::MAGETAB::Assay |
MAGE-TAB assay class |
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Bio::MAGETAB::BaseClass |
Abstract base class for all MAGE-TAB classes. |
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Bio::MAGETAB::Comment |
MAGE-TAB user-defined comment class |
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Bio::MAGETAB::CompositeElement |
MAGE-TAB composite element class |
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Bio::MAGETAB::Contact |
MAGE-TAB contact class |
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Bio::MAGETAB::ControlledTerm |
MAGE-TAB controlled term class |
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Bio::MAGETAB::Data |
Abstract data class |
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Bio::MAGETAB::DataAcquisition |
MAGE-TAB data acquisition class |
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Bio::MAGETAB::DataFile |
MAGE-TAB data file class |
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Bio::MAGETAB::DataMatrix |
MAGE-TAB data matrix class |
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Bio::MAGETAB::DatabaseEntry |
MAGE-TAB database entry class |
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Bio::MAGETAB::DesignElement |
Abstract design element class |
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Bio::MAGETAB::Edge |
MAGE-TAB edge class |
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Bio::MAGETAB::Event |
Abstract event class |
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Bio::MAGETAB::Extract |
MAGE-TAB extract class |
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Bio::MAGETAB::Factor |
MAGE-TAB experimental factor class |
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Bio::MAGETAB::FactorValue |
MAGE-TAB experimental factor class |
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Bio::MAGETAB::Feature |
MAGE-TAB feature class |
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Bio::MAGETAB::Investigation |
MAGE-TAB investigation class |
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Bio::MAGETAB::LabeledExtract |
MAGE-TAB labeled extract class |
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Bio::MAGETAB::Material |
Abstract material class |
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Bio::MAGETAB::MatrixColumn |
MAGE-TAB matrix column class |
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Bio::MAGETAB::MatrixRow |
MAGE-TAB matrix row class |
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Bio::MAGETAB::Measurement |
MAGE-TAB measurement class |
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Bio::MAGETAB::Node |
Abstract node class |
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Bio::MAGETAB::Normalization |
MAGE-TAB data acquisition class |
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Bio::MAGETAB::ParameterValue |
MAGE-TAB parameter value class |
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Bio::MAGETAB::Protocol |
MAGE-TAB protocol class |
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Bio::MAGETAB::ProtocolApplication |
MAGE-TAB protocol application class |
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Bio::MAGETAB::ProtocolParameter |
MAGE-TAB protocol parameter class |
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Bio::MAGETAB::Publication |
MAGE-TAB publication class |
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Bio::MAGETAB::Reporter |
MAGE-TAB reporter class |
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Bio::MAGETAB::SDRF |
MAGE-TAB SDRF class |
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Bio::MAGETAB::SDRFRow |
MAGE-TAB SDRF row class |
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Bio::MAGETAB::Sample |
MAGE-TAB sample class |
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Bio::MAGETAB::Source |
MAGE-TAB source class |
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Bio::MAGETAB::TermSource |
MAGE-TAB term source class |
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Bio::MAGETAB::Types |
custom data types for Bio::MAGETAB |
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Bio::MAGETAB::Util::Builder |
A storage class used to track
Bio::MAGETAB object creation. |
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Bio::MAGETAB::Util::DBLoader |
A persistent storage class used to
track Bio::MAGETAB object creation and insertion into a relational
database. |
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Bio::MAGETAB::Util::Persistence |
A Tangram-based object persistence
class for MAGE-TAB. |
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Bio::MAGETAB::Util::Reader |
A parser/validator for MAGE-TAB documents. |
1 |
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Bio::MAGETAB::Util::Reader::ADF |
ADF parser class. |
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Bio::MAGETAB::Util::Reader::DataMatrix |
Data matrix parser class. |
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Bio::MAGETAB::Util::Reader::IDF |
IDF parser class. |
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Bio::MAGETAB::Util::Reader::SDRF |
SDRF parser class. |
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Bio::MAGETAB::Util::Reader::Tabfile |
An abstract class providing methods for
handling tab-delimited files. |
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Bio::MAGETAB::Util::Reader::TagValueFile |
An abstract class providing methods for
handling tab-delimited files. |
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Bio::MAGETAB::Util::RewriteAE |
A utility class providing methods to
correct some common errors in ArrayExpress MAGE-TAB documents. |
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Bio::MAGETAB::Util::Writer |
Export of MAGE-TAB objects. |
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Bio::MAGETAB::Util::Writer::ADF |
Export of MAGE-TAB ArrayDesign
objects. |
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Bio::MAGETAB::Util::Writer::GraphViz |
Visualization of MAGE-TAB objects. |
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Bio::MAGETAB::Util::Writer::IDF |
Export of MAGE-TAB Investigation
objects. |
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Bio::MAGETAB::Util::Writer::SDRF |
Export of MAGE-TAB SDRF
objects. |
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Bio::MAGETAB::Util::Writer::Tabfile |
Abstract MAGE-TAB exporter class. |
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