Bio-ToolBox 1.63
- Released by
- TJPARNELL
- Version
- Release Date
- 2018-10-24
- Kwalitee
- 143.75
- Core Kwalitee
- 93.75
- LINKS
Bio-ToolBox 1.63 Deleted
Kwalitee Issues
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::ToolBox
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-ToolBox-1.63/lib/Bio/ToolBox/SeqFeature.pm -- Around line 120: '=item' outside of any '=over' Around line 128: You forgot a '=back' before '=head2' Bio-ToolBox-1.63/scripts/bam2wig.pl -- Around line 3064: '=item' outside of any '=over'
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::ToolBox, Bio::ToolBox::Data, Bio::ToolBox::Data::Feature, Bio::ToolBox::Data::Stream, Bio::ToolBox::Data::core, Bio::ToolBox::Data::file, Bio::ToolBox::GeneTools, Bio::ToolBox::SeqFeature, Bio::ToolBox::big_helper, Bio::ToolBox::db_helper, Bio::ToolBox::db_helper::alignment_callbacks, Bio::ToolBox::db_helper::bam, Bio::ToolBox::db_helper::big, Bio::ToolBox::db_helper::bigbed, Bio::ToolBox::db_helper::bigwig, Bio::ToolBox::db_helper::config, Bio::ToolBox::db_helper::constants, Bio::ToolBox::db_helper::hts, Bio::ToolBox::db_helper::seqfasta, Bio::ToolBox::db_helper::useq, Bio::ToolBox::db_helper::wiggle, Bio::ToolBox::parser::bed, Bio::ToolBox::parser::gff, Bio::ToolBox::parser::ucsc, Bio::ToolBox::utility
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 1.36,1.51,1.54,1.60,1.61,1.62,1.63
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::ToolBox | Tools for querying and analysis of genomic data | 1.63 | metacpan |
| Bio::ToolBox::Data | Reading, writing, and manipulating data structure | 1.62 | metacpan |
| Bio::ToolBox::Data::Feature | Objects representing rows in a data table | 1.63 | metacpan |
| Bio::ToolBox::Data::Iterator | metacpan | ||
| Bio::ToolBox::Data::Stream | Read, Write, and Manipulate Data File Line by Line | 1.61 | metacpan |
| Bio::ToolBox::Data::core | Common functions to Bio:ToolBox::Data family | 1.61 | metacpan |
| Bio::ToolBox::Data::file | File functions to Bio:ToolBox::Data family | 1.62 | metacpan |
| Bio::ToolBox::GeneTools | SeqFeature agnostic methods for working with gene models | 1.63 | metacpan |
| Bio::ToolBox::SeqFeature | Fast, simple SeqFeature implementation | 1.63 | metacpan |
| Bio::ToolBox::big_helper | 1.62 | metacpan | |
| Bio::ToolBox::db_helper | helper interface to various database formats | 1.61 | metacpan |
| Bio::ToolBox::db_helper::alignment_callbacks | 1.62 | metacpan | |
| Bio::ToolBox::db_helper::bam | 1.62 | metacpan | |
| Bio::ToolBox::db_helper::big | 1.60 | metacpan | |
| Bio::ToolBox::db_helper::big::BedIteratorWrapper | metacpan | ||
| Bio::ToolBox::db_helper::big::BigWigSet | metacpan | ||
| Bio::ToolBox::db_helper::bigbed | 1.51 | metacpan | |
| Bio::ToolBox::db_helper::bigwig | 1.51 | metacpan | |
| Bio::ToolBox::db_helper::config | 1.54 | metacpan | |
| Bio::ToolBox::db_helper::constants | metacpan | ||
| Bio::ToolBox::db_helper::hts | 1.63 | metacpan | |
| Bio::ToolBox::db_helper::seqfasta | 1.54 | metacpan | |
| Bio::ToolBox::db_helper::useq | 1.51 | metacpan | |
| Bio::ToolBox::db_helper::wiggle | 1.51 | metacpan | |
| Bio::ToolBox::parser::bed | Parser for BED-style formats | 1.62 | metacpan |
| Bio::ToolBox::parser::gff | parse GFF3, GTF, and GFF files | 1.62 | metacpan |
| Bio::ToolBox::parser::ucsc | Parser for UCSC genePred, refFlat, etc formats | 1.62 | metacpan |
| Bio::ToolBox::parser::ucsc::builder | metacpan | ||
| Bio::ToolBox::utility | common utility functions for Bio::ToolBox | 1.36 | metacpan |