App-Fasops 0.6.3
Files
- Build.PL
- Changes
- LICENSE
- MANIFEST
- META.json
- META.yml
- README.md
- cpanfile
- lib/App/Fasops.pm
- lib/App/Fasops/Command/axt2fas.pm
- lib/App/Fasops/Command/check.pm
- lib/App/Fasops/Command/concat.pm
- lib/App/Fasops/Command/consensus.pm
- lib/App/Fasops/Command/covers.pm
- lib/App/Fasops/Command/join.pm
- lib/App/Fasops/Command/links.pm
- lib/App/Fasops/Command/maf2fas.pm
- lib/App/Fasops/Command/mergecsv.pm
- lib/App/Fasops/Command/names.pm
- lib/App/Fasops/Command/refine.pm
- lib/App/Fasops/Command/replace.pm
- lib/App/Fasops/Command/separate.pm
- lib/App/Fasops/Command/slice.pm
- lib/App/Fasops/Command/split.pm
- lib/App/Fasops/Command/stat.pm
- lib/App/Fasops/Command/subset.pm
- lib/App/Fasops/Command/vars.pm
- lib/App/Fasops/Command/xlsx.pm
- lib/App/Fasops/Common.pm
- minil.toml
- script/fasops
- share/poa-blosum80.mat
- t/01-basic.t
- t/02-commands.t
- t/03-names.t
- t/04-subset.t
- t/05-covers.t
- t/06-axt2fas.t
- t/07-maf2fas.t
- t/08-separate.t
- t/09-links.t
- t/10-replace.t
- t/11-refine-msa.t
- t/11-refine.t
- t/12-split.t
- t/13-slice.t
- t/14-join.t
- t/15-xlsx.t
- t/16-check.t
- t/17-concat.t
- t/18-stat.t
- t/19-mergecsv.t
- t/20-consensus.t
- t/21-vars.t
- t/90-common-variations.t
- t/90-common.t
- t/91-common-trim.t
- t/92-common-transform.t
- t/93-common-ld.t
- t/93-common-poa.t
- t/Arabid_thaliana.pair.fas
- t/NC_000932.fa
- t/NC_000932.fa.fai
- t/NC_007942.maf.gz.fas.gz
- t/RM11_1a.chr.sizes
- t/S288cvsRM11_1a.slice.fas
- t/S288cvsSpar.slice.fas
- t/S288cvsYJM789.slice.fas
- t/anno.yml
- t/example.axt
- t/example.fa
- t/example.fas
- t/example.maf
- t/example.name.list
- t/links.copy.csv
- t/links.count.csv
- t/refine.fas
- t/refine2.fas
- t/replace.fail.tsv
- t/replace.remove.tsv
- t/replace.tsv
- t/slice.fas
- t/slice.yml