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Kwalitee Issues

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::Chado::Schema::Util

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name Abstract Version View
Bio::Chado::NaturalDiversity::Reports 0.20000 metacpan
Bio::Chado::Schema A standard DBIx::Class layer for the Chado database schema. 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLine 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineCvtermprop 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineFeature 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineLibrary 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLinePub 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineSynonym 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLineprop 0.20000 metacpan
Bio::Chado::Schema::Result::CellLine::CellLinepropPub 0.20000 metacpan
Bio::Chado::Schema::Result::Companalysis::Analysis 0.20000 metacpan
Bio::Chado::Schema::Result::Companalysis::Analysisfeature 0.20000 metacpan
Bio::Chado::Schema::Result::Companalysis::Analysisfeatureprop 0.20000 metacpan
Bio::Chado::Schema::Result::Companalysis::Analysisprop 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::AllFeatureNames 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::Dfeatureloc 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FLoc 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FType 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureContains 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureDifference 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureDisjoint featurelocs do not meet. symmetric 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureDistance 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureIntersection 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureMeets 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureMeetsOnSameStrand 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeatureUnion 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FeaturesetMeets 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FnrType 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::FpKey 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::Gff3atts 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::Gff3view 0.20000 metacpan
Bio::Chado::Schema::Result::Composite::Gffatts 0.20000 metacpan
Bio::Chado::Schema::Result::Contact::Contact Model persons, institutes, groups, organizations, etc. 0.20000 metacpan
Bio::Chado::Schema::Result::Contact::ContactRelationship Model relationships between contacts 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Chadoprop 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CommonAncestorCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CommonDescendantCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Cv 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvCvtermCount per-cv terms counts (excludes obsoletes) 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvCvtermCountWithObs per-cv terms counts (includes obsoletes) 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvLeaf 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvLinkCount 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvPathCount 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvRoot 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Cvprop 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Cvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvtermDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::CvtermRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Cvtermpath 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Cvtermprop 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Cvtermsynonym 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::Dbxrefprop 0.20000 metacpan
Bio::Chado::Schema::Result::Cv::StatsPathsToRoot 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::Eimage 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::Expression The expression table is essentially a bridge table. 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::ExpressionCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::ExpressionCvtermprop 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::ExpressionImage 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::ExpressionPub 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::Expressionprop 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::FeatureExpression 0.20000 metacpan
Bio::Chado::Schema::Result::Expression::FeatureExpressionprop 0.20000 metacpan
Bio::Chado::Schema::Result::General::Db 0.20000 metacpan
Bio::Chado::Schema::Result::General::DbDbxrefCount per-db dbxref counts 0.20000 metacpan
Bio::Chado::Schema::Result::General::Dbxref 0.20000 metacpan
Bio::Chado::Schema::Result::General::Tableinfo 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::Environment The environmental component of a phenotype description. 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::EnvironmentCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::FeatureGenotype 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::Genotype 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::Genotypeprop 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::Phendesc 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::PhenotypeComparison 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Genetic::Phenstatement 0.20000 metacpan
Bio::Chado::Schema::Result::Library::Library 0.20000 metacpan
Bio::Chado::Schema::Result::Library::LibraryCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Library::LibraryDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Library::LibraryFeature 0.20000 metacpan
Bio::Chado::Schema::Result::Library::LibraryPub 0.20000 metacpan
Bio::Chado::Schema::Result::Library::LibrarySynonym 0.20000 metacpan
Bio::Chado::Schema::Result::Library::Libraryprop 0.20000 metacpan
Bio::Chado::Schema::Result::Library::LibrarypropPub 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Acquisition 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::AcquisitionRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Acquisitionprop Parameters associated with image acquisition. 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Arraydesign 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Arraydesignprop 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Assay 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::AssayBiomaterial 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::AssayProject Link assays to projects. 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Assayprop Extra assay properties that are not accounted for in assay. 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Biomaterial 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::BiomaterialDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::BiomaterialRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::BiomaterialTreatment 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Biomaterialprop 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Channel 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Control 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Element 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::ElementRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Elementresult 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::ElementresultRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Magedocumentation 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Mageml 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Protocol Procedural notes on how data was prepared and processed. 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Protocolparam 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Quantification 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::QuantificationRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Quantificationprop 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Study 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::StudyAssay 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Studydesign 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Studydesignprop 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Studyfactor 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Studyfactorvalue 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Studyprop 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::StudypropFeature 0.20000 metacpan
Bio::Chado::Schema::Result::Mage::Treatment 0.20000 metacpan
Bio::Chado::Schema::Result::Map::Featuremap 0.20000 metacpan
Bio::Chado::Schema::Result::Map::FeaturemapPub 0.20000 metacpan
Bio::Chado::Schema::Result::Map::Featurepos 0.20000 metacpan
Bio::Chado::Schema::Result::Map::Featurerange 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperiment 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentContact 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentDbxref Cross-reference experiment to accessions, images, etc 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentGenotype 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPhenotype 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentProject 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentProtocol Linking table: experiments to the protocols they involve. 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPub Linking nd_experiment(s) to publication(s) 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStock 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStockDbxref Cross-reference experiment_stock to accessions, images, etc 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStockprop 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentprop 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdGeolocation 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdGeolocationprop 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdProtocol 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolReagent 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolprop Property/value associations for protocol. 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdReagent 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdReagentRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::NaturalDiversity::NdReagentprop 0.20000 metacpan
Bio::Chado::Schema::Result::Organism::Organism 0.20000 metacpan
Bio::Chado::Schema::Result::Organism::OrganismDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Organism::Organismprop Tag-value properties - follows standard chado model. 0.20000 metacpan
Bio::Chado::Schema::Result::Phenotype::FeaturePhenotype 0.20000 metacpan
Bio::Chado::Schema::Result::Phenotype::Phenotype 0.20000 metacpan
Bio::Chado::Schema::Result::Phenotype::PhenotypeCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Phenotype::Phenotypeprop 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::Phylonode 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::PhylonodeDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::PhylonodePub 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::PhylonodeRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::Phylonodeprop 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::Phylotree Global anchor for phylogenetic tree. 0.20000 metacpan
Bio::Chado::Schema::Result::Phylogeny::PhylotreePub 0.20000 metacpan
Bio::Chado::Schema::Result::Project::Project Standard Chado flexible property table for projects. 0.20000 metacpan
Bio::Chado::Schema::Result::Project::ProjectContact Linking table for associating projects and contacts. 0.20000 metacpan
Bio::Chado::Schema::Result::Project::ProjectPub Linking table for associating projects and publications. 0.20000 metacpan
Bio::Chado::Schema::Result::Project::ProjectRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Project::Projectprop 0.20000 metacpan
Bio::Chado::Schema::Result::Pub::Pub 0.20000 metacpan
Bio::Chado::Schema::Result::Pub::PubDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Pub::PubRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Pub::Pubauthor 0.20000 metacpan
Bio::Chado::Schema::Result::Pub::Pubprop 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::Cvtermsynonym 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::Feature 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeaturePub 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeaturePubprop Property or attribute of a feature_pub link. 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureRelationshipPub 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureRelationshipprop 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureRelationshippropPub Provenance for feature_relationshipprop. 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeatureSynonym Linking table between feature and synonym. 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::Featureloc 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeaturelocPub 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::Featureprop 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::FeaturepropPub 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::IntronCombinedView 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::IntronlocView 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::ProteinCodingGene 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::Synonym 0.20000 metacpan
Bio::Chado::Schema::Result::Sequence::TypeFeatureCount per-feature-type feature counts 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::Stock 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockCvtermprop 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockDbxref 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockDbxrefprop 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockGenotype 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockPub 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockRelationship 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockRelationshipPub 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::Stockcollection 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockcollectionStock 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::Stockcollectionprop 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::Stockprop 0.20000 metacpan
Bio::Chado::Schema::Result::Stock::StockpropPub 0.20000 metacpan
Bio::Chado::Schema::Test Library to be used by Bio::Chado::Schema test scripts. 0.20000 metacpan
Bio::Chado::Schema::Util utility functions shared by Bio::Chado::Schema objects 0.20000 metacpan

Provides

Name File View
Bio::Chado::Schema::Result::Cv::Cvterm::ResultSet lib/Bio/Chado/Schema/Result/Cv/Cvterm.pm metacpan
Bio::Chado::Schema::Result::Stock::Stock::ResultSet lib/Bio/Chado/Schema/Result/Stock/Stock.pm metacpan

Other Files

Changes metacpan
MANIFEST metacpan
META.json metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan
README.md metacpan
dist.ini metacpan