Bio-Chaos 0.02
- Released by
- CMUNGALL
- Version
- Release Date
- 2005-09-03
- Kwalitee
- 118.75
- Core Kwalitee
- 78.12
- LINKS
Bio-Chaos 0.02 Latest
Kwalitee Issues
- has_manifest
-
Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- has_human_readable_license
-
Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- manifest_matches_dist
-
Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.
Error: Cannot find MANIFEST in dist.
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-Chaos-0.02/bin/cx-chadoxml2chaos.pl -- Around line 72: Unknown directive: =Head1 Bio-Chaos-0.02/bin/cx-gff2chaos.pl -- Around line 82: Unknown directive: =Head1 Bio-Chaos-0.02/bin/cx-query-chado.pl -- Around line 54: =back without =over
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::Chaos, Bio::Chaos::ChaosGraph, Bio::Chaos::DB::Chado, Bio::Chaos::FeatureUtil, Bio::Chaos::Handler::base_handler, Bio::Chaos::Handler::gff3_to_chaos, Bio::Chaos::Parser::base_parser, Bio::Chaos::Parser::fasta, Bio::Chaos::Parser::gff3, Bio::Chaos::Root, Bio::Chaos::XSLTHelper
- no_unauthorized_packages
-
Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.
Error:
- Iterator
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::Chaos | utility class for handling Chaos-XML | metacpan | |
| Bio::Chaos::ChaosGraph | object for representing a chaos-xml dataset | metacpan | |
| Bio::Chaos::DB::Chado | I/O from a chado db | metacpan | |
| Bio::Chaos::FeatureUtil | sequence and feature utilities | metacpan | |
| Bio::Chaos::Handler::base_handler | metacpan | ||
| Bio::Chaos::Handler::gff3_to_chaos | metacpan | ||
| Bio::Chaos::Parser::base_parser | metacpan | ||
| Bio::Chaos::Parser::fasta | fasta sequence input/output stream | metacpan | |
| Bio::Chaos::Parser::gff3 | metacpan | ||
| Bio::Chaos::Root | root utility class for chaos objects | 0.02 | metacpan |
| Bio::Chaos::XSLTHelper | chains xslts | metacpan |
Provides
| Name | File | View |
|---|---|---|
| Iterator | lib/Bio/Chaos/ChaosGraph.pm | metacpan |