Kwalitee Issues

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

has_human_readable_license

Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

has_manifest

Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error: Cannot find MANIFEST in dist.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: Bio-Chaos-0.02/bin/cx-chadoxml2chaos.pl -- Around line 72: Unknown directive: =Head1 Bio-Chaos-0.02/bin/cx-gff2chaos.pl -- Around line 82: Unknown directive: =Head1 Bio-Chaos-0.02/bin/cx-query-chado.pl -- Around line 54: =back without =over

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

no_unauthorized_packages

Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.

Error:

  • Iterator

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::Chaos, Bio::Chaos::ChaosGraph, Bio::Chaos::DB::Chado, Bio::Chaos::FeatureUtil, Bio::Chaos::Handler::base_handler, Bio::Chaos::Handler::gff3_to_chaos, Bio::Chaos::Parser::base_parser, Bio::Chaos::Parser::fasta, Bio::Chaos::Parser::gff3, Bio::Chaos::Root, Bio::Chaos::XSLTHelper

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

Modules

Name Abstract Version View
Bio::Chaos utility class for handling Chaos-XML metacpan
Bio::Chaos::ChaosGraph object for representing a chaos-xml dataset metacpan
Bio::Chaos::DB::Chado I/O from a chado db metacpan
Bio::Chaos::FeatureUtil sequence and feature utilities metacpan
Bio::Chaos::Handler::base_handler metacpan
Bio::Chaos::Handler::gff3_to_chaos metacpan
Bio::Chaos::Parser::base_parser metacpan
Bio::Chaos::Parser::fasta fasta sequence input/output stream metacpan
Bio::Chaos::Parser::gff3 metacpan
Bio::Chaos::Root root utility class for chaos objects 0.02 metacpan
Bio::Chaos::XSLTHelper chains xslts metacpan

Provides

Name File View
Iterator lib/Bio/Chaos/ChaosGraph.pm metacpan

Other Files

META.yml metacpan
Makefile.PL metacpan
README metacpan