Kwalitee Issues


Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.


Fix the version(s).


Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: Bio::Pipeline::Comparison::Exceptions


Add a META.json to the distribution. Your buildtool should be able to autogenerate it.


If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.


Fix the version numbers so that version::is_lax($version) returns true.


  • lib/ HASH(0x720ce38)


Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.


  • Vcf


Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::Pipeline::Comparison::Exceptions


Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.


Name Abstract Version View
Bio::Pipeline::Comparison Comparative assesment of variant calling (CAVar) metacpan
Bio::Pipeline::Comparison::Exceptions Custom exceptions metacpan
Bio::Pipeline::Comparison::Generate::Evolve Take in a reference genome and evolve it. metacpan
Bio::Pipeline::Comparison::Generate::EvolvedSet Take in a reference genome and evolve it multiple times to produce multiple FASTA files and VCF files containing the differences to the original reference. metacpan
Bio::Pipeline::Comparison::Generate::VCFWriter Create a VCF with the differences between a reference and a single evolved genome. Outputs a gzipped VCF file and a tabix file. metacpan
Bio::Pipeline::Comparison::Report::InputParameters Take in a set of input parameters for the evalute pipeline functionality, validate them, then manipulate them into a usable set. metacpan
Bio::Pipeline::Comparison::Report::Overview Aggregate together the results of multiple VCF comparisons metacpan
Bio::Pipeline::Comparison::Report::ParseVCFCompare Take in the output of VCF compare and return details about intersection of variants. metacpan
Bio::Pipeline::Comparison::Types Moose types to use for validation metacpan
Bio::Pipeline::Comparison::Validate::Executable Validates the executable is available in the path before running it metacpan
FaSlice from VCFTools metacpan
Vcf from VCFTools metacpan


Name File View
Vcf3_2 lib/ metacpan
Vcf3_3 lib/ metacpan
Vcf4_0 lib/ metacpan
Vcf4_1 lib/ metacpan
VcfReader lib/ metacpan

Other Files

MANIFEST metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan
dist.ini metacpan