Kwalitee Issues

buildtool_not_executable

Change the permissions of Build.PL/Makefile.PL to not-executable.

package_version_matches_dist_version

Fix the version(s).

prereq_matches_use

List all used modules in META.yml requires

Error:

  • DBD::Oracle

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::BioEntry, Bio::DB::BioDB, Bio::DB::BioSQL::AnnotationCollectionAdaptor, Bio::DB::BioSQL::BaseDriver, Bio::DB::BioSQL::BasePersistenceAdaptor, Bio::DB::BioSQL::BioNamespaceAdaptor, Bio::DB::BioSQL::BiosequenceAdaptor, Bio::DB::BioSQL::ClusterAdaptor, Bio::DB::BioSQL::CommentAdaptor, Bio::DB::BioSQL::DBAdaptor, Bio::DB::BioSQL::DBLinkAdaptor, Bio::DB::BioSQL::LocationAdaptor, Bio::DB::BioSQL::MultiDB, Bio::DB::BioSQL::OBDA, Bio::DB::BioSQL::OntologyAdaptor, Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Oracle::PathAdaptorDriver, Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver, Bio::DB::BioSQL::Oracle::TermAdaptorDriver, Bio::DB::BioSQL::PathAdaptor, Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Pg::PathAdaptorDriver, Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver, Bio::DB::BioSQL::Pg::TermAdaptorDriver, Bio::DB::BioSQL::PrimarySeqAdaptor, Bio::DB::BioSQL::ReferenceAdaptor, Bio::DB::BioSQL::RelationshipAdaptor, Bio::DB::BioSQL::SeqAdaptor, Bio::DB::BioSQL::SeqFeatureAdaptor, Bio::DB::BioSQL::SimpleValueAdaptor, Bio::DB::BioSQL::SpeciesAdaptor, Bio::DB::BioSQL::TermAdaptor, Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver, Bio::DB::BioSQL::mysql::PathAdaptorDriver, Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver, Bio::DB::BioSQL::mysql::TermAdaptorDriver, Bio::DB::CacheServer::SeqDB, Bio::DB::DBAdaptorI, Bio::DB::DBContextI, Bio::DB::DBD, Bio::DB::DBI, Bio::DB::DBI::Oracle, Bio::DB::DBI::Pg, Bio::DB::DBI::Transaction, Bio::DB::DBI::TransactionListener, Bio::DB::DBI::base, Bio::DB::DBI::mysql, Bio::DB::EasyArgv, Bio::DB::PersistenceAdaptorI, Bio::DB::Persistent::BioNamespace, Bio::DB::Persistent::ObjectRellMapperI, Bio::DB::Persistent::PersistentObject, Bio::DB::Persistent::PersistentObjectFactory, Bio::DB::Persistent::PrimarySeq, Bio::DB::Persistent::Seq, Bio::DB::Persistent::SeqFeature, Bio::DB::PersistentObjectI, Bio::DB::Query::AbstractQuery, Bio::DB::Query::BioQuery, Bio::DB::Query::DBQueryResult, Bio::DB::Query::PrebuiltResult, Bio::DB::Query::QueryConstraint, Bio::DB::Query::QueryResultI, Bio::DB::Query::SqlGenerator, Bio::DB::Query::SqlQuery, Bio::DB::SimpleDBContext

build_prereq_matches_use

List all modules used in the test suite in META.yml build_requires

Error:

  • lib
  • strict
  • vars
  • warnings

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

Modules

Name Abstract Version View
Bio::BioEntry DESCRIPTION of Object 0 metacpan
Bio::DB::BioDB class creating the adaptor factory for a particular database 0 metacpan
Bio::DB::BioSQL::AnnotationCollectionAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::BaseDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::BasePersistenceAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::BioNamespaceAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::BiosequenceAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::ClusterAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::CommentAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::DBAdaptor 0 metacpan
Bio::DB::BioSQL::DBLinkAdaptor DBLink Adaptor 0 metacpan
Bio::DB::BioSQL::LocationAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::MultiDB 0 metacpan
Bio::DB::BioSQL::OBDA 0 metacpan
Bio::DB::BioSQL::OntologyAdaptor DB Adaptor for Ontology objects 0 metacpan
Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Oracle::PathAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Oracle::TermAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::PathAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Pg::PathAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::Pg::TermAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::PrimarySeqAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::ReferenceAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::RelationshipAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::SeqAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::SeqFeatureAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::SimpleValueAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::SpeciesAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::TermAdaptor DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::mysql::PathAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::BioSQL::mysql::TermAdaptorDriver DESCRIPTION of Object 0 metacpan
Bio::DB::CacheServer::SeqDB Caching DB object 0 metacpan
Bio::DB::DBAdaptorI DESCRIPTION of Interface 0 metacpan
Bio::DB::DBContextI Interface for a class implementing a database context 0 metacpan
Bio::DB::DBD DESCRIPTION of Interface 0 metacpan
Bio::DB::DBI 0 metacpan
Bio::DB::DBI::Oracle DESCRIPTION of Object 0 metacpan
Bio::DB::DBI::Pg DESCRIPTION of Object 0 metacpan
Bio::DB::DBI::Transaction DESCRIPTION of Object 0 metacpan
Bio::DB::DBI::TransactionListener a simple transaction listener 0 metacpan
Bio::DB::DBI::base base class for drivers implementing Bio::DB::DBI 0 metacpan
Bio::DB::DBI::mysql DESCRIPTION of Object 0 metacpan
Bio::DB::EasyArgv 0 metacpan
Bio::DB::PersistenceAdaptorI DESCRIPTION of Interface 0 metacpan
Bio::DB::Persistent::BioNamespace DESCRIPTION of Object 0 metacpan
Bio::DB::Persistent::ObjectRellMapperI 0 metacpan
Bio::DB::Persistent::PersistentObject makes a given object persistent 0 metacpan
Bio::DB::Persistent::PersistentObjectFactory DESCRIPTION of Object 0 metacpan
Bio::DB::Persistent::PrimarySeq Proxy object for database PrimarySeq representations 0 metacpan
Bio::DB::Persistent::Seq 0 metacpan
Bio::DB::Persistent::SeqFeature Proxy object for database SeqFeatureI representations 0 metacpan
Bio::DB::PersistentObjectI DESCRIPTION of Interface 0 metacpan
Bio::DB::Query::AbstractQuery Abstract Query class 0 metacpan
Bio::DB::Query::BioQuery Object representing a query on a bioperldb 0 metacpan
Bio::DB::Query::DBQueryResult DESCRIPTION of Object 0 metacpan
Bio::DB::Query::PrebuiltResult DESCRIPTION of Object 0 metacpan
Bio::DB::Query::QueryConstraint a constraint on a variable value in a query 0 metacpan
Bio::DB::Query::QueryResultI DESCRIPTION of Interface 0 metacpan
Bio::DB::Query::SqlGenerator Object representing an SQL Query 0 metacpan
Bio::DB::Query::SqlQuery Object representing an SQL Query 0 metacpan
Bio::DB::SimpleDBContext a base implementation of Bio::DB::DBContextI 0 metacpan

Other Files

Build.PL metacpan
Changes metacpan
MANIFEST metacpan
META.json metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan