Kwalitee Issues

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

no_pax_headers

If you use Mac OS X >= 10.6, use gnu tar (/usr/bin/gnutar) to avoid PAX headers. It's also important to rename (shorten) long file names (>= 100 characters) in the distribution.

Error: ./PaxHeaders.24019/CLIPSeqTools-0.1.7,./PaxHeaders.24019/CLIPSeqTools-0.1.7,CLIPSeqTools-0.1.7/PaxHeaders.24019/t,CLIPSeqTools-0.1.7/PaxHeaders.24019/t,CLIPSeqTools-0.1.7/t/PaxHeaders.24019/data,CLIPSeqTools-0.1.7/t/PaxHeaders.24019/data,CLIPSeqTools-0.1.7/t/data/PaxHeaders.24019/alignments2.db,CLIPSeqTools-0.1.7/t/data/PaxHeaders.24019/alignments2.db,CLIPSeqTools-0.1.7/t/data/PaxHeaders.24019/transcripts.gtf,CLIPSeqTools-0.1.7/t/data/PaxHeaders.24019/transcripts.gtf,CLIPSeqTools-0.1.7/t/data/PaxHeaders.24019/alignments1.db,CLIPSeqTools-0.1.7/t/data/PaxHeaders.24019/alignments1.db,CLIPSeqTools-0.1.7/PaxHeaders.24019/LICENSE,CLIPSeqTools-0.1.7/PaxHeaders.24019/LICENSE,CLIPSeqTools-0.1.7/PaxHeaders.24019/META.yml,CLIPSeqTools-0.1.7/PaxHeaders.24019/META.yml,CLIPSeqTools-0.1.7/PaxHeaders.24019/dist.ini,CLIPSeqTools-0.1.7/PaxHeaders.24019/dist.ini,CLIPSeqTools-0.1.7/PaxHeaders.24019/lib,CLIPSeqTools-0.1.7/PaxHeaders.24019/lib,CLIPSeqTools-0.1.7/lib/PaxHeaders.24019/CLIPSeqTools,CLIPSeqTools-0.1.7/lib/PaxHeaders.24019/CLIPSeqTools,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PlotApp,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PlotApp,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/distribution_on_introns_exons.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/distribution_on_introns_exons.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/reads_long_gaps_size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/reads_long_gaps_size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/cluster_size_and_score_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/cluster_size_and_score_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/nucleotide_composition.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/nucleotide_composition.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/conservation_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/conservation_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/distribution_on_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/distribution_on_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/libraries_relative_read_density.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/libraries_relative_read_density.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/scatterplot.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/scatterplot.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/genomic_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PlotApp/PaxHeaders.24019/genomic_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/App.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/App.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PreprocessApp.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PreprocessApp.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/Role,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/Role,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/PaxHeaders.24019/Option,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/PaxHeaders.24019/Option,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Library.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Library.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/ReferenceLibrary.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/ReferenceLibrary.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Plot.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Plot.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Transcripts.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Transcripts.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/OutputPrefix.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/OutputPrefix.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Genes.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Role/Option/PaxHeaders.24019/Genes.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PlotApp.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PlotApp.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/CompareApp,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/CompareApp,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/join_tables.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/join_tables.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/libraries_overlap_stats.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/libraries_overlap_stats.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/libraries_relative_read_density.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/libraries_relative_read_density.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/all.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/all.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/compare_counts.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/CompareApp/PaxHeaders.24019/compare_counts.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/CompareApp.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/CompareApp.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/App,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/App,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/distribution_on_introns_exons.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/distribution_on_introns_exons.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/reads_long_gaps_size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/reads_long_gaps_size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/count_reads_on_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/count_reads_on_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/size_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/cluster_size_and_score_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/cluster_size_and_score_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/export_bed.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/export_bed.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/nucleotide_composition.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/nucleotide_composition.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/genome_coverage.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/genome_coverage.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/conservation_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/conservation_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/distribution_on_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/distribution_on_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/all.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/all.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/nmer_enrichment_over_shuffled.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/nmer_enrichment_over_shuffled.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/genomic_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/App/PaxHeaders.24019/genomic_distribution.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/Tutorial,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/Tutorial,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Tutorial/PaxHeaders.24019/Details.pod,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Tutorial/PaxHeaders.24019/Details.pod,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Tutorial/PaxHeaders.24019/Introduction.pod,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/Tutorial/PaxHeaders.24019/Introduction.pod,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PreprocessApp,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PaxHeaders.24019/PreprocessApp,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/star_alignment.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/star_alignment.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/cut_adaptor.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/cut_adaptor.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_genic_elements.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_file.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_file.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/collapse_fastq.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/collapse_fastq.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/trim_fastq.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/trim_fastq.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/sam_to_sqlite.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/sam_to_sqlite.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/all.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/all.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/cleanup_alignment.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/cleanup_alignment.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_deletions.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_deletions.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_conservation.pm,CLIPSeqTools-0.1.7/lib/CLIPSeqTools/PreprocessApp/PaxHeaders.24019/annotate_with_conservation.pm,CLIPSeqTools-0.1.7/lib/PaxHeaders.24019/CLIPSeqTools.pm,CLIPSeqTools-0.1.7/lib/PaxHeaders.24019/CLIPSeqTools.pm,CLIPSeqTools-0.1.7/PaxHeaders.24019/Makefile.PL,CLIPSeqTools-0.1.7/PaxHeaders.24019/Makefile.PL,CLIPSeqTools-0.1.7/PaxHeaders.24019/bin,CLIPSeqTools-0.1.7/PaxHeaders.24019/bin,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools-preprocess,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools-preprocess,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools-compare,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools-compare,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools-plot,CLIPSeqTools-0.1.7/bin/PaxHeaders.24019/clipseqtools-plot,CLIPSeqTools-0.1.7/PaxHeaders.24019/README.md,CLIPSeqTools-0.1.7/PaxHeaders.24019/README.md,CLIPSeqTools-0.1.7/PaxHeaders.24019/META.json,CLIPSeqTools-0.1.7/PaxHeaders.24019/META.json,CLIPSeqTools-0.1.7/PaxHeaders.24019/MANIFEST,CLIPSeqTools-0.1.7/PaxHeaders.24019/MANIFEST

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name Abstract Version View
CLIPSeqTools A collection of tools for the analysis of CLIP-Seq data. 0.001007 metacpan
CLIPSeqTools::App Main CLIPSeqTools application with tools for analysis of CLIP-Seq libraries. 0.001007 metacpan
CLIPSeqTools::App::all Run all clipseqtools analyses 0.001007 metacpan
CLIPSeqTools::App::cluster_size_and_score_distribution Assemble reads in clusters and measure their size and number of contained reads distribution 0.001007 metacpan
CLIPSeqTools::App::conservation_distribution Measure reads at each conservation level 0.001007 metacpan
CLIPSeqTools::App::count_reads_on_genic_elements Count reads on transcripts, genes, exons, introns 0.001007 metacpan
CLIPSeqTools::App::distribution_on_genic_elements Measure read distribution on 5'UTR, CDS and 3'UTR. 0.001007 metacpan
CLIPSeqTools::App::distribution_on_introns_exons Measure read distribution on exons and introns. 0.001007 metacpan
CLIPSeqTools::App::export_bed Export reads to a BED file. 0.001007 metacpan
CLIPSeqTools::App::genome_coverage Measure percent of genome covered by reads. 0.001007 metacpan
CLIPSeqTools::App::genomic_distribution Count reads on genes, repeats, exons, introns, 5'UTRs, ... 0.001007 metacpan
CLIPSeqTools::App::nmer_enrichment_over_shuffled Measure Nmer enrichment over shuffled reads. 0.001007 metacpan
CLIPSeqTools::App::nucleotide_composition Measure nucleotide composition along reads. 0.001007 metacpan
CLIPSeqTools::App::reads_long_gaps_size_distribution Measure size distribution of long alignment gaps produced by a gap aware aligner. 0.001007 metacpan
CLIPSeqTools::App::size_distribution Measure size distribution for reads. 0.001007 metacpan
CLIPSeqTools::CompareApp A collection of tools to compare two CLIP-Seq libraries. 0.001007 metacpan
CLIPSeqTools::CompareApp::all Run all clipseqtools-compare analyses. 0.001007 metacpan
CLIPSeqTools::CompareApp::compare_counts Compare tables with counts. 0.001007 metacpan
CLIPSeqTools::CompareApp::join_tables Perform inner join on tab delimited table files. Can be used to prepare DESeq input file from counts tables. 0.001007 metacpan
CLIPSeqTools::CompareApp::libraries_overlap_stats Count reads of library A that overlap reads in reference library B. 0.001007 metacpan
CLIPSeqTools::CompareApp::libraries_relative_read_density Measure read density around the reads of a reference library 0.001007 metacpan
CLIPSeqTools::PlotApp Tools to create plots based on the output of CLIPSeqTools applications. 0.001007 metacpan
CLIPSeqTools::PlotApp::cluster_size_and_score_distribution Create plots for script cluster_size_and_score_distribution. 0.001007 metacpan
CLIPSeqTools::PlotApp::conservation_distribution Create plots for script conservation_distribution. 0.001007 metacpan
CLIPSeqTools::PlotApp::distribution_on_genic_elements Create plots for script distribution_on_genic_elements. 0.001007 metacpan
CLIPSeqTools::PlotApp::distribution_on_introns_exons Create plots for script distribution_on_introns_exons. 0.001007 metacpan
CLIPSeqTools::PlotApp::genomic_distribution Create plots for script genomic_distribution. 0.001007 metacpan
CLIPSeqTools::PlotApp::libraries_relative_read_density Create plots for script libraries_relative_read_density. 0.001007 metacpan
CLIPSeqTools::PlotApp::nucleotide_composition Create plots for script nucleotide_composition. 0.001007 metacpan
CLIPSeqTools::PlotApp::reads_long_gaps_size_distribution Create plots for script reads_long_gaps_size_distribution. 0.001007 metacpan
CLIPSeqTools::PlotApp::scatterplot Create scatterplot for two tables. 0.001007 metacpan
CLIPSeqTools::PlotApp::size_distribution Create plots for script size_distribution. 0.001007 metacpan
CLIPSeqTools::PreprocessApp Tools to process a fastq file with CLIP-Seq data into a database compatible with clipseqtools. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::all Run all clipseqtools-preprocess analyses. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::annotate_with_conservation Annotate alignments in a database table with conservation scores. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::annotate_with_deletions Annotate alignments in a database table with deletions. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::annotate_with_file Annotate alignments in a database table with regions from a BED/SAM file. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::annotate_with_genic_elements Annotate alignments in a database table with genic information. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::cleanup_alignment Keep a single record for multimappers, sort and collapse similar STAR alignments. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::collapse_fastq Keep a single record for identical sequences 0.001007 metacpan
CLIPSeqTools::PreprocessApp::cut_adaptor Cut the adaptor sequence from the 3'end of reads. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::sam_to_sqlite Load a SAM file in an SQLite database. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::star_alignment Do reads alignment with STAR. 0.001007 metacpan
CLIPSeqTools::PreprocessApp::trim_fastq Trim N nucleotides from the start and/or end of FASTQ sequences. 0.001007 metacpan
CLIPSeqTools::Role::Option::Genes Role to enable reading a GTF file with genes/transcripts from the command line 0.001007 metacpan
CLIPSeqTools::Role::Option::Library Role to enable reading a library with reads from the command line 0.001007 metacpan
CLIPSeqTools::Role::Option::OutputPrefix Role to enable output prefix as command line option. 0.001007 metacpan
CLIPSeqTools::Role::Option::Plot Role to enable plot as command line option 0.001007 metacpan
CLIPSeqTools::Role::Option::ReferenceLibrary Role to enable reading reference libraries with reads from the command line 0.001007 metacpan
CLIPSeqTools::Role::Option::Transcripts Role to enable reading a GTF file with transcripts from the command line 0.001007 metacpan

Other Files

MANIFEST metacpan
META.json metacpan
META.yml metacpan
Makefile.PL metacpan
README.md metacpan
dist.ini metacpan