TRL-Microarray 0.063
- Released by
- CJONES
- Version
- Release Date
- 2007-10-27
- Kwalitee
- 121.88
- Core Kwalitee
- 81.25
- LINKS
TRL-Microarray 0.063 Deleted
Kwalitee Issues
- has_meta_yml
-
Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.
- buildtool_not_executable
-
Change the permissions of Build.PL/Makefile.PL to not-executable.
- manifest_matches_dist
-
Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.
Error:
- MANIFEST (20) does not match dist (25):
- Missing in MANIFEST: ._Makefile.PL, lib/TRL/._Microarray.pm, lib/TRL/Microarray/._Feature.pm, lib/TRL/Microarray/._Image.pm, t/._TRL-Microarray-Microarray_File-GAL_File.t
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: TRL::._Microarray, TRL::Microarray::._Feature, TRL::Microarray::._Image
- prereq_matches_use
-
List all used modules in META.yml requires
Error:
- File::Slurp
- GD::Image
- Image::ExifTool
- Statistics::Descriptive
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- no_dot_underscore_files
-
If you use Mac OS X, set COPYFILE_DISABLE (for OS 10.5 and better) or COPY_EXTENDED_ATTRIBUTES_DISABLE (for OS 10.4) environmental variable to true to exclude dot underscore files from a distribution.
Error:
- ._Makefile.PL
- lib/TRL/._Microarray.pm
- lib/TRL/Microarray/._Feature.pm
- lib/TRL/Microarray/._Image.pm
- t/._TRL-Microarray-Microarray_File-GAL_File.t
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: TRL::._Microarray, TRL::Microarray::._Feature, TRL::Microarray::._Image
- test_prereq_matches_use
-
List all modules used in the test suite in META.yml test_requires
Error:
- Test::Deep
- Test::Differences
- Test::Group
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 0.02,0.04,0.05,0.062
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| TRL::Microarray | A Perl module for creating and manipulating microarray objects | 0.062 | metacpan |
| TRL::Microarray::Feature | A Perl module for creating and manipulating microarray feature objects | 0.05 | metacpan |
| TRL::Microarray::Image | A Perl module for creating microarray data plots | metacpan | |
| TRL::Microarray::Microarray_File | Perl objects describing microarray files | 0.04 | metacpan |
| TRL::Microarray::Microarray_File::Agilent | A Perl module for managing Agilent microarray files | 0.05 | metacpan |
| TRL::Microarray::Microarray_File::BlueFuse | A Perl module for managing BlueFuse 'output' files | 0.02 | metacpan |
| TRL::Microarray::Microarray_File::Data_File | An object oriented Perl module describing microarray data files | 0.02 | metacpan |
| TRL::Microarray::Microarray_File::GAL_File | A Perl module for managing microarray GAL file objects | 0.02 | metacpan |
| TRL::Microarray::Microarray_File::GenePix | A Perl module for managing microarray Axon GenePix data files | 0.02 | metacpan |
| TRL::Microarray::Microarray_File::Quantarray | A Perl module for managing Perkin Elmer 'Scanarray' microarray files | 0.05 | metacpan |
| TRL::Microarray::Spot | A Perl module for creating and manipulating microarray spot objects | 0.02 | metacpan |
Provides
| Name | File | View |
|---|---|---|
| agilent_file | lib/TRL/Microarray/Microarray_File/Agilent.pm | metacpan |
| array_feature | lib/TRL/Microarray/Feature.pm | metacpan |
| array_spot | lib/TRL/Microarray/Spot.pm | metacpan |
| bluefuse_file | lib/TRL/Microarray/Microarray_File/BlueFuse.pm | metacpan |
| data_file | lib/TRL/Microarray/Microarray_File/Data_File.pm | metacpan |
| delimited_file | lib/TRL/Microarray/Microarray_File.pm | metacpan |
| gal_file | lib/TRL/Microarray/Microarray_File/GAL_File.pm | metacpan |
| genepix_file | lib/TRL/Microarray/Microarray_File/GenePix.pm | metacpan |
| genepix_image | lib/TRL/Microarray/Microarray_File/GenePix.pm | metacpan |
| heatmap | lib/TRL/Microarray/Image.pm | metacpan |
| intensity_heatmap | lib/TRL/Microarray/Image.pm | metacpan |
| intensity_scatter | lib/TRL/Microarray/Image.pm | metacpan |
| log2_heatmap | lib/TRL/Microarray/Image.pm | metacpan |
| log_file | lib/TRL/Microarray/Microarray_File.pm | metacpan |
| ma_plot | lib/TRL/Microarray/Image.pm | metacpan |
| microarray | lib/TRL/Microarray.pm | metacpan |
| microarray_file | lib/TRL/Microarray/Microarray_File.pm | metacpan |
| microarray_image_file | lib/TRL/Microarray/Microarray_File.pm | metacpan |
| microarray_text_file | lib/TRL/Microarray/Microarray_File.pm | metacpan |
| plot | lib/TRL/Microarray/Image.pm | metacpan |
| quantarray_file | lib/TRL/Microarray/Microarray_File/Quantarray.pm | metacpan |
| quantarray_image | lib/TRL/Microarray/Microarray_File/Quantarray.pm | metacpan |
| ri_plot | lib/TRL/Microarray/Image.pm | metacpan |
| simple_delimited_file | lib/TRL/Microarray/Microarray_File.pm | metacpan |