CPANTS

go-perl 0.04

Kwalitee Issues

This is not the latest release. The following issues may have already been fixed in the newer releases.

Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.

Add =head1 LICENSE and the text of the license to the main module in your code.

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: GO::Handlers::obo, GO::Handlers::obo_sxpr, GO::Handlers::obo_xml, GO::Handlers::summary, GO::Handlers::sxpr, GO::Handlers::xml, GO::IO::XML, GO::Model::Ontology, GO::Parsers::obo_parser, GO::Parsers::obo_xml_parser, GO::Parsers::owl_parser

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: go-perl-0.04/GO/Parser.pm -- Around line 172: You forgot a '=back' before '=head2'

6 Extra Issues

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: GO/Basic.pm, GO/Handlers/abstract_prolog_writer.pm, GO/Handlers/abstract_sql_writer.pm, GO/Handlers/base.pm, GO/Handlers/go_def.pm, GO/Handlers/go_ont.pm, GO/Handlers/go_xref.pm, GO/Handlers/godb_prestore.pm, GO/Handlers/lexanalysis.pm, GO/Handlers/lexanalysis2sql.pm, GO/Handlers/obj.pm, GO/Handlers/obj_storable.pm, GO/Handlers/obj_yaml.pm, GO/Handlers/obo.pm, GO/Handlers/obo_html.pm, GO/Handlers/obo_sxpr.pm, GO/Handlers/obo_text.pm, GO/Handlers/obo_xml.pm, GO/Handlers/owl.pm, GO/Handlers/owl_to_obo_text.pm, GO/Handlers/pathlist.pm, GO/Handlers/prolog.pm, GO/Handlers/rdf.pm, GO/Handlers/summary.pm, GO/Handlers/sxpr.pm, GO/Handlers/tbl.pm, GO/Handlers/text_html.pm, GO/Handlers/xml.pm, GO/Handlers/xsl_base.pm, GO/IO/Analysis.pm, GO/IO/Blast.pm, GO/IO/Dotty.pm, GO/IO/RDFXML.pm, GO/IO/XML.pm, GO/Model/Association.pm, GO/Model/CrossProduct.pm, GO/Model/Evidence.pm, GO/Model/GeneProduct.pm, GO/Model/Graph.pm, GO/Model/GraphIterator.pm, GO/Model/GraphNodeInstance.pm, GO/Model/Modification.pm, GO/Model/Ontology.pm, GO/Model/Path.pm, GO/Model/Property.pm, GO/Model/Relationship.pm, GO/Model/Restriction.pm, GO/Model/Root.pm, GO/Model/Seq.pm, GO/Model/Species.pm, GO/Model/Term.pm, GO/Model/TreeIterator.pm, GO/Model/Xref.pm, GO/ObjCache.pm, GO/ObjFactory.pm, GO/Parser.pm, GO/Parsers/ParserEventNames.pm, GO/Parsers/base_parser.pm, GO/Parsers/go_assoc_parser.pm, GO/Parsers/go_def_parser.pm, GO/Parsers/go_ont_parser.pm, GO/Parsers/go_xref_parser.pm, GO/Parsers/locuslink_parser.pm, GO/Parsers/mesh_parser.pm, GO/Parsers/mgi_assoc_parser.pm, GO/Parsers/ncbi_taxon_names_parser.pm, GO/Parsers/ncbi_taxonomy_parser.pm, GO/Parsers/obj_emitter.pm, GO/Parsers/obj_storable_parser.pm, GO/Parsers/obj_yaml_parser.pm, GO/Parsers/obo_parser.pm, GO/Parsers/obo_text_parser.pm, GO/Parsers/obo_xml_parser.pm, GO/Parsers/owl_parser.pm, GO/Parsers/unknown_format_parser.pm, GO/Utils.pm

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: GO::Basic, GO::Handlers::abstract_prolog_writer, GO::Handlers::abstract_sql_writer, GO::Handlers::base, GO::Handlers::go_def, GO::Handlers::go_ont, GO::Handlers::go_xref, GO::Handlers::godb_prestore, GO::Handlers::lexanalysis, GO::Handlers::lexanalysis2sql, GO::Handlers::obj, GO::Handlers::obj_storable, GO::Handlers::obj_yaml, GO::Handlers::obo, GO::Handlers::obo_html, GO::Handlers::obo_sxpr, GO::Handlers::obo_text, GO::Handlers::obo_xml, GO::Handlers::owl, GO::Handlers::owl_to_obo_text, GO::Handlers::pathlist, GO::Handlers::prolog, GO::Handlers::rdf, GO::Handlers::summary, GO::Handlers::sxpr, GO::Handlers::tbl, GO::Handlers::text_html, GO::Handlers::xml, GO::Handlers::xsl_base, GO::IO::Analysis, GO::IO::Blast, GO::IO::Dotty, GO::IO::RDFXML, GO::IO::XML, GO::Model::Association, GO::Model::CrossProduct, GO::Model::Evidence, GO::Model::GeneProduct, GO::Model::Graph, GO::Model::GraphIterator, GO::Model::GraphNodeInstance, GO::Model::Modification, GO::Model::Ontology, GO::Model::Path, GO::Model::Property, GO::Model::Relationship, GO::Model::Restriction, GO::Model::Root, GO::Model::Seq, GO::Model::Species, GO::Model::Term, GO::Model::TreeIterator, GO::Model::Xref, GO::ObjCache, GO::ObjFactory, GO::Parser, GO::Parsers::ParserEventNames, GO::Parsers::base_parser, GO::Parsers::go_assoc_parser, GO::Parsers::go_def_parser, GO::Parsers::go_ont_parser, GO::Parsers::go_xref_parser, GO::Parsers::locuslink_parser, GO::Parsers::mesh_parser, GO::Parsers::mgi_assoc_parser, GO::Parsers::ncbi_taxon_names_parser, GO::Parsers::ncbi_taxonomy_parser, GO::Parsers::obj_emitter, GO::Parsers::obj_storable_parser, GO::Parsers::obj_yaml_parser, GO::Parsers::obo_parser, GO::Parsers::obo_text_parser, GO::Parsers::obo_xml_parser, GO::Parsers::owl_parser, GO::Parsers::unknown_format_parser, GO::Utils

6 Experimental Issues

meta_yml_has_provides: Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
meta_yml_has_repository_resource: Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
has_separate_license_file: This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
has_security_doc: Add SECURITY(.pod|md). See Software::Security::Policy.
security_doc_contains_contact: Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
has_contributing_doc: Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.

Modules

Name	Abstract	View
GO::Basic	basic procedural interface to go-perl	metacpan
GO::Handlers::abstract_prolog_writer		metacpan
GO::Handlers::abstract_sql_writer		metacpan
GO::Handlers::base		metacpan
GO::Handlers::go_def		metacpan
GO::Handlers::go_ont		metacpan
GO::Handlers::go_xref		metacpan
GO::Handlers::godb_prestore	transforms OBO XML to GODB XML	metacpan
GO::Handlers::lexanalysis		metacpan
GO::Handlers::lexanalysis2sql		metacpan
GO::Handlers::obj	parses GO files into GO object model	metacpan
GO::Handlers::obj_storable		metacpan
GO::Handlers::obj_yaml		metacpan
GO::Handlers::obo		metacpan
GO::Handlers::obo_html		metacpan
GO::Handlers::obo_sxpr		metacpan
GO::Handlers::obo_text		metacpan
GO::Handlers::obo_xml		metacpan
GO::Handlers::owl	writes OWL	metacpan
GO::Handlers::owl_to_obo_text		metacpan
GO::Handlers::pathlist		metacpan
GO::Handlers::prolog		metacpan
GO::Handlers::rdf		metacpan
GO::Handlers::summary		metacpan
GO::Handlers::sxpr		metacpan
GO::Handlers::tbl		metacpan
GO::Handlers::text_html		metacpan
GO::Handlers::xml		metacpan
GO::Handlers::xsl_base		metacpan
GO::IO::Analysis	preliminary analysis object	metacpan
GO::IO::Blast	Gene Ontology Blast Reports DEPRECATED	metacpan
GO::IO::Dotty		metacpan
GO::IO::RDFXML		metacpan
GO::IO::XML		metacpan
GO::Model::Association		metacpan
GO::Model::CrossProduct		metacpan
GO::Model::Evidence		metacpan
GO::Model::GeneProduct		metacpan
GO::Model::Graph	a collection of relationships over terms	metacpan
GO::Model::GraphIterator		metacpan
GO::Model::GraphNodeInstance	a graph node located in a tree	metacpan
GO::Model::Modification		metacpan
GO::Model::Ontology		metacpan
GO::Model::Path		metacpan
GO::Model::Property		metacpan
GO::Model::Relationship		metacpan
GO::Model::Restriction		metacpan
GO::Model::Root		metacpan
GO::Model::Seq		metacpan
GO::Model::Species		metacpan
GO::Model::Term	a term or concept in an ontology	metacpan
GO::Model::TreeIterator		metacpan
GO::Model::Xref		metacpan
GO::ObjCache		metacpan
GO::ObjFactory	GO Object Factory	metacpan
GO::Parser	parses all GO files formats and types	metacpan
GO::Parsers::ParserEventNames	exports constants corresponding to XML	metacpan
GO::Parsers::base_parser	base class for parsers	metacpan
GO::Parsers::go_assoc_parser	syntax parsing of GO gene-association flat files	metacpan
GO::Parsers::go_def_parser	syntax parsing of GO .def flat files	metacpan
GO::Parsers::go_ont_parser	syntax parsing of GO .ontology flat files	metacpan
GO::Parsers::go_xref_parser	syntax parsing of GO xref flat files (eg eg2go, metacyc2go)	metacpan
GO::Parsers::locuslink_parser		metacpan
GO::Parsers::mesh_parser	Parses Mesh ascii text files	metacpan
GO::Parsers::mgi_assoc_parser	parses MGI gene assoc stanza files	metacpan
GO::Parsers::ncbi_taxon_names_parser	OBO Flat file parser object	metacpan
GO::Parsers::ncbi_taxonomy_parser		metacpan
GO::Parsers::obj_emitter		metacpan
GO::Parsers::obj_storable_parser		metacpan
GO::Parsers::obj_yaml_parser		metacpan
GO::Parsers::obo_parser		metacpan
GO::Parsers::obo_text_parser	OBO Flat file parser object	metacpan
GO::Parsers::obo_xml_parser		metacpan
GO::Parsers::owl_parser		metacpan
GO::Parsers::unknown_format_parser	base class for parsers	metacpan
GO::Utils		metacpan

Other Files


Changes	metacpan
MANIFEST	metacpan
META.yml	metacpan
Makefile.PL	metacpan
README	metacpan