Bio-MAGE-2002-09 02_0

Released by
JASONS
Version
Release Date
2002-10-21
Kwalitee
118.75
Core Kwalitee
75
LINKS

Kwalitee Issues

has_readme

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has_meta_yml

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has_changelog

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has_human_readable_license

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prereq_matches_use

List all used modules in META.yml requires

Error:

  • Tie::IxHash
  • XML::Xerces

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: Bio-MAGE-2002-09-02_0/Array/Array/Array.pm -- Around line 105: '=item' outside of any '=over' Around line 380: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/ArrayGroup/ArrayGroup.pm -- Around line 123: '=item' outside of any '=over' Around line 418: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/ArrayManufacture/ArrayManufacture.pm -- Around line 101: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/ArrayManufactureDeviation/ArrayManufactureDeviation.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/FeatureDefect/FeatureDefect.pm -- Around line 84: '=item' outside of any '=over' Around line 309: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/Fiducial/Fiducial.pm -- Around line 84: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/ManufactureLIMS/ManufactureLIMS.pm -- Around line 100: '=item' outside of any '=over' Around line 345: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/ManufactureLIMSBiomaterial/ManufactureLIMSBiomaterial.pm -- Around line 84: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/PositionDelta/PositionDelta.pm -- Around line 85: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Array/ZoneDefect/ZoneDefect.pm -- Around line 84: '=item' outside of any '=over' Around line 309: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/ArrayDesign/ArrayDesign/ArrayDesign.pm -- Around line 112: '=item' outside of any '=over' Around line 382: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/ArrayDesign/CompositeGroup/CompositeGroup.pm -- Around line 76: '=item' outside of any '=over' Around line 326: You forgot a '=back' before '=head2' Around line 335: You can't have =items (as at line 340) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/ArrayDesign/DesignElementGroup/DesignElementGroup.pm -- Around line 97: '=item' outside of any '=over' Around line 342: You forgot a '=back' before '=head2' Around line 351: You can't have =items (as at line 356) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/ArrayDesign/FeatureGroup/FeatureGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/ArrayDesign/PhysicalArrayDesign/PhysicalArrayDesign.pm -- Around line 80: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/ArrayDesign/ReporterGroup/ReporterGroup.pm -- Around line 77: '=item' outside of any '=over' Around line 327: You forgot a '=back' before '=head2' Around line 336: You can't have =items (as at line 341) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/ArrayDesign/Zone/Zone.pm -- Around line 101: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/ArrayDesign/ZoneGroup/ZoneGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 346: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/ArrayDesign/ZoneLayout/ZoneLayout.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/AuditAndSecurity/Audit/Audit.pm -- Around line 85: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/AuditAndSecurity/Contact/Contact.pm -- Around line 115: '=item' outside of any '=over' Around line 385: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/AuditAndSecurity/Organization/Organization.pm -- Around line 76: '=item' outside of any '=over' Around line 351: You forgot a '=back' before '=head2' Around line 360: You can't have =items (as at line 365) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/AuditAndSecurity/Person/Person.pm -- Around line 89: '=item' outside of any '=over' Around line 379: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/AuditAndSecurity/Security/Security.pm -- Around line 80: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Around line 334: You can't have =items (as at line 339) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/AuditAndSecurity/SecurityGroup/SecurityGroup.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BQS/BibliographicReference/BibliographicReference.pm -- Around line 118: '=item' outside of any '=over' Around line 398: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Base/Base.pm -- Around line 43: '=item' outside of any '=over' Around line 203: You forgot a '=back' before '=head1' Bio-MAGE-2002-09-02_0/BioAssay/BioAssay/BioAssay.pm -- Around line 98: '=item' outside of any '=over' Around line 343: You forgot a '=back' before '=head2' Around line 352: You can't have =items (as at line 357) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/BioAssayCreation/BioAssayCreation.pm -- Around line 95: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Around line 359: You can't have =items (as at line 364) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/BioAssayTreatment/BioAssayTreatment.pm -- Around line 91: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/Channel/Channel.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/DerivedBioAssay/DerivedBioAssay.pm -- Around line 84: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Around line 353: You can't have =items (as at line 358) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/FeatureExtraction/FeatureExtraction.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/Hybridization/Hybridization.pm -- Around line 69: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Around line 333: You can't have =items (as at line 338) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/Image/Image.pm -- Around line 86: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssay/ImageAcquisition/ImageAcquisition.pm -- Around line 76: '=item' outside of any '=over' Around line 331: You forgot a '=back' before '=head2' Around line 340: You can't have =items (as at line 345) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/MeasuredBioAssay/MeasuredBioAssay.pm -- Around line 80: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Around line 344: You can't have =items (as at line 349) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssay/PhysicalBioAssay/PhysicalBioAssay.pm -- Around line 84: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Around line 353: You can't have =items (as at line 358) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/BioAssayData/BioAssayData.pm -- Around line 106: '=item' outside of any '=over' Around line 366: You forgot a '=back' before '=head2' Around line 375: You can't have =items (as at line 380) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/BioAssayDatum/BioAssayDatum.pm -- Around line 89: '=item' outside of any '=over' Around line 319: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssayData/BioAssayDimension/BioAssayDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/BioAssayMap/BioAssayMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/BioAssayMapping/BioAssayMapping.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssayData/BioDataCube/BioDataCube.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssayData/BioDataTuples/BioDataTuples.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssayData/BioDataValues/BioDataValues.pm -- Around line 83: '=item' outside of any '=over' Around line 293: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssayData/CompositeSequenceDimension/CompositeSequenceDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/DerivedBioAssayData/DerivedBioAssayData.pm -- Around line 76: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/DesignElementDimension/DesignElementDimension.pm -- Around line 86: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Around line 330: You can't have =items (as at line 335) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/DesignElementMap/DesignElementMap.pm -- Around line 86: '=item' outside of any '=over' Around line 326: You forgot a '=back' before '=head2' Around line 335: You can't have =items (as at line 340) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/DesignElementMapping/DesignElementMapping.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssayData/FeatureDimension/FeatureDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/MeasuredBioAssayData/MeasuredBioAssayData.pm -- Around line 69: '=item' outside of any '=over' Around line 329: You forgot a '=back' before '=head2' Around line 338: You can't have =items (as at line 343) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/QuantitationTypeDimension/QuantitationTypeDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/QuantitationTypeMap/QuantitationTypeMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/QuantitationTypeMapping/QuantitationTypeMapping.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioAssayData/ReporterDimension/ReporterDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioAssayData/Transformation/Transformation.pm -- Around line 92: '=item' outside of any '=over' Around line 357: You forgot a '=back' before '=head2' Around line 366: You can't have =items (as at line 371) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioEvent/BioEvent/BioEvent.pm -- Around line 102: '=item' outside of any '=over' Around line 342: You forgot a '=back' before '=head2' Around line 351: You can't have =items (as at line 356) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioEvent/Map/Map.pm -- Around line 86: '=item' outside of any '=over' Around line 326: You forgot a '=back' before '=head2' Around line 335: You can't have =items (as at line 340) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioMaterial/BioMaterial/BioMaterial.pm -- Around line 105: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioMaterial/BioMaterialMeasurement/BioMaterialMeasurement.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioMaterial/BioSample/BioSample.pm -- Around line 76: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Around line 345: You can't have =items (as at line 350) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioMaterial/BioSource/BioSource.pm -- Around line 76: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Around line 345: You can't have =items (as at line 350) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioMaterial/Compound/Compound.pm -- Around line 89: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioMaterial/CompoundMeasurement/CompoundMeasurement.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioMaterial/LabeledExtract/LabeledExtract.pm -- Around line 76: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Around line 345: You can't have =items (as at line 350) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/BioMaterial/Treatment/Treatment.pm -- Around line 93: '=item' outside of any '=over' Around line 358: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioSequence/BioSequence/BioSequence.pm -- Around line 113: '=item' outside of any '=over' Around line 398: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioSequence/SeqFeature/SeqFeature.pm -- Around line 81: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioSequence/SeqFeatureLocation/SeqFeatureLocation.pm -- Around line 85: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/BioSequence/SequencePosition/SequencePosition.pm -- Around line 94: '=item' outside of any '=over' Around line 314: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Describable/Describable.pm -- Around line 125: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Description/Database/Database.pm -- Around line 85: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Description/DatabaseEntry/DatabaseEntry.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Description/Description/Description.pm -- Around line 97: '=item' outside of any '=over' Around line 352: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Description/ExternalReference/ExternalReference.pm -- Around line 88: '=item' outside of any '=over' Around line 318: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Description/OntologyEntry/OntologyEntry.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/DesignElement/CompositeCompositeMap/CompositeCompositeMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/CompositePosition/CompositePosition.pm -- Around line 80: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Around line 319: You can't have =items (as at line 324) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/CompositeSequence/CompositeSequence.pm -- Around line 85: '=item' outside of any '=over' Around line 340: You forgot a '=back' before '=head2' Around line 349: You can't have =items (as at line 354) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/DesignElement/DesignElement.pm -- Around line 93: '=item' outside of any '=over' Around line 333: You forgot a '=back' before '=head2' Around line 342: You can't have =items (as at line 347) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/Feature/Feature.pm -- Around line 97: '=item' outside of any '=over' Around line 367: You forgot a '=back' before '=head2' Around line 376: You can't have =items (as at line 381) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/FeatureInformation/FeatureInformation.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/DesignElement/FeatureLocation/FeatureLocation.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/DesignElement/FeatureReporterMap/FeatureReporterMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/MismatchInformation/MismatchInformation.pm -- Around line 84: '=item' outside of any '=over' Around line 309: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/DesignElement/Position/Position.pm -- Around line 85: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/DesignElement/Reporter/Reporter.pm -- Around line 90: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Around line 359: You can't have =items (as at line 364) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/ReporterCompositeMap/ReporterCompositeMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/DesignElement/ReporterPosition/ReporterPosition.pm -- Around line 80: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Around line 319: You can't have =items (as at line 324) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/Experiment/Experiment/Experiment.pm -- Around line 92: '=item' outside of any '=over' Around line 352: You forgot a '=back' before '=head2' Around line 361: You can't have =items (as at line 366) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/Experiment/ExperimentDesign/ExperimentDesign.pm -- Around line 96: '=item' outside of any '=over' Around line 351: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Experiment/ExperimentalFactor/ExperimentalFactor.pm -- Around line 84: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/Experiment/FactorValue/FactorValue.pm -- Around line 84: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/Extendable/Extendable.pm -- Around line 153: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/HigherLevelAnalysis/BioAssayDataCluster/BioAssayDataCluster.pm -- Around line 80: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Around line 334: You can't have =items (as at line 339) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/HigherLevelAnalysis/Node/Node.pm -- Around line 84: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/HigherLevelAnalysis/NodeContents/NodeContents.pm -- Around line 84: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/HigherLevelAnalysis/NodeValue/NodeValue.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Identifiable/Identifiable.pm -- Around line 175: '=item' outside of any '=over' Around line 410: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/ConcentrationUnit/ConcentrationUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/DistanceUnit/DistanceUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/MassUnit/MassUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/Measurement/Measurement.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/QuantityUnit/QuantityUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/TemperatureUnit/TemperatureUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/TimeUnit/TimeUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/Unit/Unit.pm -- Around line 105: '=item' outside of any '=over' Around line 320: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Measurement/VolumeUnit/VolumeUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/NameValueType/NameValueType.pm -- Around line 74: '=item' outside of any '=over' Around line 299: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/Hardware/Hardware.pm -- Around line 93: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/HardwareApplication/HardwareApplication.pm -- Around line 81: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/Parameter/Parameter.pm -- Around line 80: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Around line 334: You can't have =items (as at line 339) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/Protocol/ParameterValue/ParameterValue.pm -- Around line 81: '=item' outside of any '=over' Around line 301: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/Parameterizable/Parameterizable.pm -- Around line 98: '=item' outside of any '=over' Around line 343: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/ParameterizableApplication/ParameterizableApplication.pm -- Around line 93: '=item' outside of any '=over' Around line 323: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/Protocol/Protocol.pm -- Around line 93: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/ProtocolApplication/ProtocolApplication.pm -- Around line 93: '=item' outside of any '=over' Around line 348: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/Protocol/Software/Software.pm -- Around line 88: '=item' outside of any '=over' Around line 353: You forgot a '=back' before '=head2' Around line 362: You can't have =items (as at line 367) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/Protocol/SoftwareApplication/SoftwareApplication.pm -- Around line 85: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/QuantitationType/ConfidenceIndicator/ConfidenceIndicator.pm -- Around line 93: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Around line 372: You can't have =items (as at line 377) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/DerivedSignal/DerivedSignal.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/Error/Error.pm -- Around line 69: '=item' outside of any '=over' Around line 339: You forgot a '=back' before '=head2' Around line 348: You can't have =items (as at line 353) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/ExpectedValue/ExpectedValue.pm -- Around line 69: '=item' outside of any '=over' Around line 339: You forgot a '=back' before '=head2' Around line 348: You can't have =items (as at line 353) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/Failed/Failed.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/MeasuredSignal/MeasuredSignal.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/PValue/PValue.pm -- Around line 69: '=item' outside of any '=over' Around line 339: You forgot a '=back' before '=head2' Around line 348: You can't have =items (as at line 353) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/PresentAbsent/PresentAbsent.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/QuantitationType/QuantitationType.pm -- Around line 112: '=item' outside of any '=over' Around line 377: You forgot a '=back' before '=head2' Bio-MAGE-2002-09-02_0/QuantitationType/Ratio/Ratio.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/SpecializedQuantitationType/SpecializedQuantitationType.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/QuantitationType/StandardQuantitationType/StandardQuantitationType.pm -- Around line 95: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-2002-09-02_0/SQLUtils/SQLUtils.pm -- Around line 249: '=item' outside of any '=over' =over without closing =back Bio-MAGE-2002-09-02_0/XMLUtils/XMLUtils.pm -- Around line 176: '=item' outside of any '=over' Around line 620: You forgot a '=back' before '=head1'

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::MAGE, Bio::MAGE::Array, Bio::MAGE::Array::Array, Bio::MAGE::Array::ArrayGroup, Bio::MAGE::Array::ArrayManufacture, Bio::MAGE::Array::ArrayManufactureDeviation, Bio::MAGE::Array::FeatureDefect, Bio::MAGE::Array::Fiducial, Bio::MAGE::Array::ManufactureLIMS, Bio::MAGE::Array::ManufactureLIMSBiomaterial, Bio::MAGE::Array::PositionDelta, Bio::MAGE::Array::ZoneDefect, Bio::MAGE::ArrayDesign, Bio::MAGE::ArrayDesign::ArrayDesign, Bio::MAGE::ArrayDesign::CompositeGroup, Bio::MAGE::ArrayDesign::DesignElementGroup, Bio::MAGE::ArrayDesign::FeatureGroup, Bio::MAGE::ArrayDesign::PhysicalArrayDesign, Bio::MAGE::ArrayDesign::ReporterGroup, Bio::MAGE::ArrayDesign::Zone, Bio::MAGE::ArrayDesign::ZoneGroup, Bio::MAGE::ArrayDesign::ZoneLayout, Bio::MAGE::Association, Bio::MAGE::AuditAndSecurity, Bio::MAGE::AuditAndSecurity::Audit, Bio::MAGE::AuditAndSecurity::Contact, Bio::MAGE::AuditAndSecurity::Organization, Bio::MAGE::AuditAndSecurity::Person, Bio::MAGE::AuditAndSecurity::Security, Bio::MAGE::AuditAndSecurity::SecurityGroup, Bio::MAGE::BQS, Bio::MAGE::BQS::BibliographicReference, Bio::MAGE::Base, Bio::MAGE::BioAssay, Bio::MAGE::BioAssay::BioAssay, Bio::MAGE::BioAssay::BioAssayCreation, Bio::MAGE::BioAssay::BioAssayTreatment, Bio::MAGE::BioAssay::Channel, Bio::MAGE::BioAssay::DerivedBioAssay, Bio::MAGE::BioAssay::FeatureExtraction, Bio::MAGE::BioAssay::Hybridization, Bio::MAGE::BioAssay::Image, Bio::MAGE::BioAssay::ImageAcquisition, Bio::MAGE::BioAssay::MeasuredBioAssay, Bio::MAGE::BioAssay::PhysicalBioAssay, Bio::MAGE::BioAssayData, Bio::MAGE::BioAssayData::BioAssayData, Bio::MAGE::BioAssayData::BioAssayDatum, Bio::MAGE::BioAssayData::BioAssayDimension, Bio::MAGE::BioAssayData::BioAssayMap, Bio::MAGE::BioAssayData::BioAssayMapping, Bio::MAGE::BioAssayData::BioDataCube, Bio::MAGE::BioAssayData::BioDataTuples, Bio::MAGE::BioAssayData::BioDataValues, Bio::MAGE::BioAssayData::CompositeSequenceDimension, Bio::MAGE::BioAssayData::DerivedBioAssayData, Bio::MAGE::BioAssayData::DesignElementDimension, Bio::MAGE::BioAssayData::DesignElementMap, Bio::MAGE::BioAssayData::DesignElementMapping, Bio::MAGE::BioAssayData::FeatureDimension, Bio::MAGE::BioAssayData::MeasuredBioAssayData, Bio::MAGE::BioAssayData::QuantitationTypeDimension, Bio::MAGE::BioAssayData::QuantitationTypeMap, Bio::MAGE::BioAssayData::QuantitationTypeMapping, Bio::MAGE::BioAssayData::ReporterDimension, Bio::MAGE::BioAssayData::Transformation, Bio::MAGE::BioEvent, Bio::MAGE::BioEvent::BioEvent, Bio::MAGE::BioEvent::Map, Bio::MAGE::BioMaterial, Bio::MAGE::BioMaterial::BioMaterial, Bio::MAGE::BioMaterial::BioMaterialMeasurement, Bio::MAGE::BioMaterial::BioSample, Bio::MAGE::BioMaterial::BioSource, Bio::MAGE::BioMaterial::Compound, Bio::MAGE::BioMaterial::CompoundMeasurement, Bio::MAGE::BioMaterial::LabeledExtract, Bio::MAGE::BioMaterial::Treatment, Bio::MAGE::BioSequence, Bio::MAGE::BioSequence::BioSequence, Bio::MAGE::BioSequence::SeqFeature, Bio::MAGE::BioSequence::SeqFeatureLocation, Bio::MAGE::BioSequence::SequencePosition, Bio::MAGE::Describable, Bio::MAGE::Description, Bio::MAGE::Description::Database, Bio::MAGE::Description::DatabaseEntry, Bio::MAGE::Description::Description, Bio::MAGE::Description::ExternalReference, Bio::MAGE::Description::OntologyEntry, Bio::MAGE::DesignElement, Bio::MAGE::DesignElement::CompositeCompositeMap, Bio::MAGE::DesignElement::CompositePosition, Bio::MAGE::DesignElement::CompositeSequence, Bio::MAGE::DesignElement::DesignElement, Bio::MAGE::DesignElement::Feature, Bio::MAGE::DesignElement::FeatureInformation, Bio::MAGE::DesignElement::FeatureLocation, Bio::MAGE::DesignElement::FeatureReporterMap, Bio::MAGE::DesignElement::MismatchInformation, Bio::MAGE::DesignElement::Position, Bio::MAGE::DesignElement::Reporter, Bio::MAGE::DesignElement::ReporterCompositeMap, Bio::MAGE::DesignElement::ReporterPosition, Bio::MAGE::Experiment, Bio::MAGE::Experiment::Experiment, Bio::MAGE::Experiment::ExperimentDesign, Bio::MAGE::Experiment::ExperimentalFactor, Bio::MAGE::Experiment::FactorValue, Bio::MAGE::Extendable, Bio::MAGE::HigherLevelAnalysis, Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster, Bio::MAGE::HigherLevelAnalysis::Node, Bio::MAGE::HigherLevelAnalysis::NodeContents, Bio::MAGE::HigherLevelAnalysis::NodeValue, Bio::MAGE::Identifiable, Bio::MAGE::Measurement, Bio::MAGE::Measurement::ConcentrationUnit, Bio::MAGE::Measurement::DistanceUnit, Bio::MAGE::Measurement::MassUnit, Bio::MAGE::Measurement::Measurement, Bio::MAGE::Measurement::QuantityUnit, Bio::MAGE::Measurement::TemperatureUnit, Bio::MAGE::Measurement::TimeUnit, Bio::MAGE::Measurement::Unit, Bio::MAGE::Measurement::VolumeUnit, Bio::MAGE::NameValueType, Bio::MAGE::Protocol, Bio::MAGE::Protocol::Hardware, Bio::MAGE::Protocol::HardwareApplication, Bio::MAGE::Protocol::Parameter, Bio::MAGE::Protocol::ParameterValue, Bio::MAGE::Protocol::Parameterizable, Bio::MAGE::Protocol::ParameterizableApplication, Bio::MAGE::Protocol::Protocol, Bio::MAGE::Protocol::ProtocolApplication, Bio::MAGE::Protocol::Software, Bio::MAGE::Protocol::SoftwareApplication, Bio::MAGE::QuantitationType, Bio::MAGE::QuantitationType::ConfidenceIndicator, Bio::MAGE::QuantitationType::DerivedSignal, Bio::MAGE::QuantitationType::Error, Bio::MAGE::QuantitationType::ExpectedValue, Bio::MAGE::QuantitationType::Failed, Bio::MAGE::QuantitationType::MeasuredSignal, Bio::MAGE::QuantitationType::PValue, Bio::MAGE::QuantitationType::PresentAbsent, Bio::MAGE::QuantitationType::QuantitationType, Bio::MAGE::QuantitationType::Ratio, Bio::MAGE::QuantitationType::SpecializedQuantitationType, Bio::MAGE::QuantitationType::StandardQuantitationType, Bio::MAGE::SQLWriter, Bio::MAGE::XMLReader

no_invalid_versions

Fix the version numbers so that version::is_lax($version) returns true.

Error:

  • Array/Array.pm: HASH(0x5609d52b9228)
  • Array/Array/Array.pm: HASH(0x5609d5796ee0)
  • Array/ArrayGroup/ArrayGroup.pm: HASH(0x5609d79272e0)
  • Array/ArrayManufacture/ArrayManufacture.pm: HASH(0x5609d7927868)
  • Array/ArrayManufactureDeviation/ArrayManufactureDeviation.pm: HASH(0x5609d53760a0)
  • Array/FeatureDefect/FeatureDefect.pm: HASH(0x5609d78db208)
  • Array/Fiducial/Fiducial.pm: HASH(0x5609d53b4368)
  • Array/ManufactureLIMS/ManufactureLIMS.pm: HASH(0x5609d52ccfc8)
  • Array/ManufactureLIMSBiomaterial/ManufactureLIMSBiomaterial.pm: HASH(0x5609d5388888)
  • Array/PositionDelta/PositionDelta.pm: HASH(0x5609d58255b0)
  • Array/ZoneDefect/ZoneDefect.pm: HASH(0x5609d53145d0)
  • ArrayDesign/ArrayDesign.pm: HASH(0x5609d53cc580)
  • ArrayDesign/ArrayDesign/ArrayDesign.pm: HASH(0x5609d56550f8)
  • ArrayDesign/CompositeGroup/CompositeGroup.pm: HASH(0x5609d4c5d900)
  • ArrayDesign/DesignElementGroup/DesignElementGroup.pm: HASH(0x5609d5375da0)
  • ArrayDesign/FeatureGroup/FeatureGroup.pm: HASH(0x5609d533c140)
  • ArrayDesign/PhysicalArrayDesign/PhysicalArrayDesign.pm: HASH(0x5609d52d5680)
  • ArrayDesign/ReporterGroup/ReporterGroup.pm: HASH(0x5609d539b970)
  • ArrayDesign/Zone/Zone.pm: HASH(0x5609d4c69300)
  • ArrayDesign/ZoneGroup/ZoneGroup.pm: HASH(0x5609d52fd3c8)
  • ArrayDesign/ZoneLayout/ZoneLayout.pm: HASH(0x5609d5633970)
  • Association/Association.pm: HASH(0x5609d7926010)
  • AuditAndSecurity/Audit/Audit.pm: HASH(0x5609d530b900)
  • AuditAndSecurity/AuditAndSecurity.pm: HASH(0x5609d533bcd8)
  • AuditAndSecurity/Contact/Contact.pm: HASH(0x5609d57aee88)
  • AuditAndSecurity/Organization/Organization.pm: HASH(0x5609d4c74c10)
  • AuditAndSecurity/Person/Person.pm: HASH(0x5609d537e908)
  • AuditAndSecurity/Security/Security.pm: HASH(0x5609d52f3978)
  • AuditAndSecurity/SecurityGroup/SecurityGroup.pm: HASH(0x5609d58343d8)
  • BQS/BQS.pm: HASH(0x5609d4c624f0)
  • BQS/BibliographicReference/BibliographicReference.pm: HASH(0x5609d52c8590)
  • Base/Base.pm: HASH(0x5609d5645518)
  • BioAssay/BioAssay.pm: HASH(0x5609d5366148)
  • BioAssay/BioAssay/BioAssay.pm: HASH(0x5609d4cb3450)
  • BioAssay/BioAssayCreation/BioAssayCreation.pm: HASH(0x5609d5792d70)
  • BioAssay/BioAssayTreatment/BioAssayTreatment.pm: HASH(0x5609d52cca88)
  • BioAssay/Channel/Channel.pm: HASH(0x5609d4311b60)
  • BioAssay/DerivedBioAssay/DerivedBioAssay.pm: HASH(0x5609d43ce348)
  • BioAssay/FeatureExtraction/FeatureExtraction.pm: HASH(0x5609d7925268)
  • BioAssay/Hybridization/Hybridization.pm: HASH(0x5609d533b9a8)
  • BioAssay/Image/Image.pm: HASH(0x5609d57d2718)
  • BioAssay/ImageAcquisition/ImageAcquisition.pm: HASH(0x5609d56a1c70)
  • BioAssay/MeasuredBioAssay/MeasuredBioAssay.pm: HASH(0x5609d57bae20)
  • BioAssay/PhysicalBioAssay/PhysicalBioAssay.pm: HASH(0x5609d52be2e0)
  • BioAssayData/BioAssayData.pm: HASH(0x5609d5323550)
  • BioAssayData/BioAssayData/BioAssayData.pm: HASH(0x5609d57e7c60)
  • BioAssayData/BioAssayDatum/BioAssayDatum.pm: HASH(0x5609d5350060)
  • BioAssayData/BioAssayDimension/BioAssayDimension.pm: HASH(0x5609d52b8658)
  • BioAssayData/BioAssayMap/BioAssayMap.pm: HASH(0x5609d7927a60)
  • BioAssayData/BioAssayMapping/BioAssayMapping.pm: HASH(0x5609d4c6c0d8)
  • BioAssayData/BioDataCube/BioDataCube.pm: HASH(0x5609d5825f10)
  • BioAssayData/BioDataTuples/BioDataTuples.pm: HASH(0x5609d534a2e0)
  • BioAssayData/BioDataValues/BioDataValues.pm: HASH(0x5609d567b488)
  • BioAssayData/CompositeSequenceDimension/CompositeSequenceDimension.pm: HASH(0x5609d567b500)
  • BioAssayData/DerivedBioAssayData/DerivedBioAssayData.pm: HASH(0x5609d53bd158)
  • BioAssayData/DesignElementDimension/DesignElementDimension.pm: HASH(0x5609d57ed3b0)
  • BioAssayData/DesignElementMap/DesignElementMap.pm: HASH(0x5609d532d490)
  • BioAssayData/DesignElementMapping/DesignElementMapping.pm: HASH(0x5609d4ca9b30)
  • BioAssayData/FeatureDimension/FeatureDimension.pm: HASH(0x5609d7926bb0)
  • BioAssayData/MeasuredBioAssayData/MeasuredBioAssayData.pm: HASH(0x5609d7927100)
  • BioAssayData/QuantitationTypeDimension/QuantitationTypeDimension.pm: HASH(0x5609d533bf30)
  • BioAssayData/QuantitationTypeMap/QuantitationTypeMap.pm: HASH(0x5609d52c8800)
  • BioAssayData/QuantitationTypeMapping/QuantitationTypeMapping.pm: HASH(0x5609d539bb38)
  • BioAssayData/ReporterDimension/ReporterDimension.pm: HASH(0x5609d537e3b0)
  • BioAssayData/Transformation/Transformation.pm: HASH(0x5609d5314f60)
  • BioEvent/BioEvent.pm: HASH(0x5609d538d798)
  • BioEvent/BioEvent/BioEvent.pm: HASH(0x5609d53b4b30)
  • BioEvent/Map/Map.pm: HASH(0x5609d5680468)
  • BioMaterial/BioMaterial.pm: HASH(0x5609d564bb50)
  • BioMaterial/BioMaterial/BioMaterial.pm: HASH(0x5609d5680300)
  • BioMaterial/BioMaterialMeasurement/BioMaterialMeasurement.pm: HASH(0x5609d52a68d8)
  • BioMaterial/BioSample/BioSample.pm: HASH(0x5609d4c32870)
  • BioMaterial/BioSource/BioSource.pm: HASH(0x5609d567c208)
  • BioMaterial/Compound/Compound.pm: HASH(0x5609d5359630)
  • BioMaterial/CompoundMeasurement/CompoundMeasurement.pm: HASH(0x5609d53cc7a8)
  • BioMaterial/LabeledExtract/LabeledExtract.pm: HASH(0x5609d7925580)
  • BioMaterial/Treatment/Treatment.pm: HASH(0x5609d53052f8)
  • BioSequence/BioSequence.pm: HASH(0x5609d53d5a98)
  • BioSequence/BioSequence/BioSequence.pm: HASH(0x5609d52df8b0)
  • BioSequence/SeqFeature/SeqFeature.pm: HASH(0x5609d530ad00)
  • BioSequence/SeqFeatureLocation/SeqFeatureLocation.pm: HASH(0x5609d57d7ec8)
  • BioSequence/SequencePosition/SequencePosition.pm: HASH(0x5609d56e5b38)
  • Describable/Describable.pm: HASH(0x5609d5745c50)
  • Description/Database/Database.pm: HASH(0x5609d42bbeb8)
  • Description/DatabaseEntry/DatabaseEntry.pm: HASH(0x5609d52cc878)
  • Description/Description.pm: HASH(0x5609d539c420)
  • Description/Description/Description.pm: HASH(0x5609d52c9178)
  • Description/ExternalReference/ExternalReference.pm: HASH(0x5609d5387dc0)
  • Description/OntologyEntry/OntologyEntry.pm: HASH(0x5609d78db0d0)
  • DesignElement/CompositeCompositeMap/CompositeCompositeMap.pm: HASH(0x5609d4cab9e8)
  • DesignElement/CompositePosition/CompositePosition.pm: HASH(0x5609d52b94e0)
  • DesignElement/CompositeSequence/CompositeSequence.pm: HASH(0x5609d52bec88)
  • DesignElement/DesignElement.pm: HASH(0x5609d56e08c8)
  • DesignElement/DesignElement/DesignElement.pm: HASH(0x5609d570ccf8)
  • DesignElement/Feature/Feature.pm: HASH(0x5609d567bbd8)
  • DesignElement/FeatureInformation/FeatureInformation.pm: HASH(0x5609d5332040)
  • DesignElement/FeatureLocation/FeatureLocation.pm: HASH(0x5609d57d7940)
  • DesignElement/FeatureReporterMap/FeatureReporterMap.pm: HASH(0x5609d56c9440)
  • DesignElement/MismatchInformation/MismatchInformation.pm: HASH(0x5609d538dba0)
  • DesignElement/Position/Position.pm: HASH(0x5609d533bea0)
  • DesignElement/Reporter/Reporter.pm: HASH(0x5609d78eaea0)
  • DesignElement/ReporterCompositeMap/ReporterCompositeMap.pm: HASH(0x5609d52ed6d0)
  • DesignElement/ReporterPosition/ReporterPosition.pm: HASH(0x5609d53aecd8)
  • Experiment/Experiment.pm: HASH(0x5609d53055b0)
  • Experiment/Experiment/Experiment.pm: HASH(0x5609d52af4e8)
  • Experiment/ExperimentDesign/ExperimentDesign.pm: HASH(0x5609d52af9e0)
  • Experiment/ExperimentalFactor/ExperimentalFactor.pm: HASH(0x5609d4c87780)
  • Experiment/FactorValue/FactorValue.pm: HASH(0x5609d538ded0)
  • Extendable/Extendable.pm: HASH(0x5609d565a9e0)
  • HigherLevelAnalysis/BioAssayDataCluster/BioAssayDataCluster.pm: HASH(0x5609d52beb80)
  • HigherLevelAnalysis/HigherLevelAnalysis.pm: HASH(0x5609d78eb6b0)
  • HigherLevelAnalysis/Node/Node.pm: HASH(0x5609d78eb7a0)
  • HigherLevelAnalysis/NodeContents/NodeContents.pm: HASH(0x5609d5340718)
  • HigherLevelAnalysis/NodeValue/NodeValue.pm: HASH(0x5609d52be268)
  • Identifiable/Identifiable.pm: HASH(0x5609d56e0460)
  • MAGE.pm: HASH(0x5609d57451b8)
  • Measurement/ConcentrationUnit/ConcentrationUnit.pm: HASH(0x5609d57bb438)
  • Measurement/DistanceUnit/DistanceUnit.pm: HASH(0x5609d5340d48)
  • Measurement/MassUnit/MassUnit.pm: HASH(0x5609d5659ea0)
  • Measurement/Measurement.pm: HASH(0x5609d56ba3f0)
  • Measurement/Measurement/Measurement.pm: HASH(0x5609d5662ed0)
  • Measurement/QuantityUnit/QuantityUnit.pm: HASH(0x5609d3f45b00)
  • Measurement/TemperatureUnit/TemperatureUnit.pm: HASH(0x5609d4f0a618)
  • Measurement/TimeUnit/TimeUnit.pm: HASH(0x5609d576c120)
  • Measurement/Unit/Unit.pm: HASH(0x5609d5349c98)
  • Measurement/VolumeUnit/VolumeUnit.pm: HASH(0x5609d7902cd0)
  • NameValueType/NameValueType.pm: HASH(0x5609d57d7ca0)
  • Protocol/Hardware/Hardware.pm: HASH(0x5609d52f29e8)
  • Protocol/HardwareApplication/HardwareApplication.pm: HASH(0x5609d79267d8)
  • Protocol/Parameter/Parameter.pm: HASH(0x5609d573bc60)
  • Protocol/ParameterValue/ParameterValue.pm: HASH(0x5609d57a5948)
  • Protocol/Parameterizable/Parameterizable.pm: HASH(0x5609d5358f10)
  • Protocol/ParameterizableApplication/ParameterizableApplication.pm: HASH(0x5609d52be5e0)
  • Protocol/Protocol.pm: HASH(0x5609d52df7d8)
  • Protocol/Protocol/Protocol.pm: HASH(0x5609d53aeba0)
  • Protocol/ProtocolApplication/ProtocolApplication.pm: HASH(0x5609d56d7630)
  • Protocol/Software/Software.pm: HASH(0x5609d57e2020)
  • Protocol/SoftwareApplication/SoftwareApplication.pm: HASH(0x5609d52fc828)
  • QuantitationType/ConfidenceIndicator/ConfidenceIndicator.pm: HASH(0x5609d4ca3768)
  • QuantitationType/DerivedSignal/DerivedSignal.pm: HASH(0x5609d7902820)
  • QuantitationType/Error/Error.pm: HASH(0x5609d4c75228)
  • QuantitationType/ExpectedValue/ExpectedValue.pm: HASH(0x5609d78db238)
  • QuantitationType/Failed/Failed.pm: HASH(0x5609d5387c88)
  • QuantitationType/MeasuredSignal/MeasuredSignal.pm: HASH(0x5609d53bcf90)
  • QuantitationType/PValue/PValue.pm: HASH(0x5609d5340160)
  • QuantitationType/PresentAbsent/PresentAbsent.pm: HASH(0x5609d53bd560)
  • QuantitationType/QuantitationType.pm: HASH(0x5609d57069d8)
  • QuantitationType/QuantitationType/QuantitationType.pm: HASH(0x5609d581de48)
  • QuantitationType/Ratio/Ratio.pm: HASH(0x5609d567ba40)
  • QuantitationType/SpecializedQuantitationType/SpecializedQuantitationType.pm: HASH(0x5609d7926df0)
  • QuantitationType/StandardQuantitationType/StandardQuantitationType.pm: HASH(0x5609d568a1d8)

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

has_security_doc

Add SECURITY(.pod|md). See Software::Security::Policy.

security_doc_contains_contact

Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.

has_contributing_doc

Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.

Modules

Name Abstract Version View
Bio::MAGE::SQLWriter a module for exporting MAGE-OM objects to a database metacpan
Bio::MAGE::XMLReader metacpan

Provides

Name File View
Bio::MAGE::ContentHandler XMLUtils/XMLUtils.pm metacpan
Bio::MAGE::DocumentHandler XMLUtils/XMLUtils.pm metacpan
Bio::MAGE::Handler XMLUtils/XMLUtils.pm metacpan
Bio::MAGE::XMLWriter XMLUtils/XMLUtils.pm metacpan

Other Files
Array/Array/Makefile.PL metacpan
Array/ArrayGroup/Makefile.PL metacpan
Array/ArrayManufacture/Makefile.PL metacpan
Array/ArrayManufactureDeviation/Makefile.PL metacpan
Array/FeatureDefect/Makefile.PL metacpan
Array/Fiducial/Makefile.PL metacpan
Array/Makefile.PL metacpan
Array/ManufactureLIMS/Makefile.PL metacpan
Array/ManufactureLIMSBiomaterial/Makefile.PL metacpan
Array/PositionDelta/Makefile.PL metacpan
Array/ZoneDefect/Makefile.PL metacpan
ArrayDesign/ArrayDesign/Makefile.PL metacpan
ArrayDesign/CompositeGroup/Makefile.PL metacpan
ArrayDesign/DesignElementGroup/Makefile.PL metacpan
ArrayDesign/FeatureGroup/Makefile.PL metacpan
ArrayDesign/Makefile.PL metacpan
ArrayDesign/PhysicalArrayDesign/Makefile.PL metacpan
ArrayDesign/ReporterGroup/Makefile.PL metacpan
ArrayDesign/Zone/Makefile.PL metacpan
ArrayDesign/ZoneGroup/Makefile.PL metacpan
ArrayDesign/ZoneLayout/Makefile.PL metacpan
Association/Makefile.PL metacpan
AuditAndSecurity/Audit/Makefile.PL metacpan
AuditAndSecurity/Contact/Makefile.PL metacpan
AuditAndSecurity/Makefile.PL metacpan
AuditAndSecurity/Organization/Makefile.PL metacpan
AuditAndSecurity/Person/Makefile.PL metacpan
AuditAndSecurity/Security/Makefile.PL metacpan
AuditAndSecurity/SecurityGroup/Makefile.PL metacpan
BQS/BibliographicReference/Makefile.PL metacpan
BQS/Makefile.PL metacpan
Base/Makefile.PL metacpan
BioAssay/BioAssay/Makefile.PL metacpan
BioAssay/BioAssayCreation/Makefile.PL metacpan
BioAssay/BioAssayTreatment/Makefile.PL metacpan
BioAssay/Channel/Makefile.PL metacpan
BioAssay/DerivedBioAssay/Makefile.PL metacpan
BioAssay/FeatureExtraction/Makefile.PL metacpan
BioAssay/Hybridization/Makefile.PL metacpan
BioAssay/Image/Makefile.PL metacpan
BioAssay/ImageAcquisition/Makefile.PL metacpan
BioAssay/Makefile.PL metacpan
BioAssay/MeasuredBioAssay/Makefile.PL metacpan
BioAssay/PhysicalBioAssay/Makefile.PL metacpan
BioAssayData/BioAssayData/Makefile.PL metacpan
BioAssayData/BioAssayDatum/Makefile.PL metacpan
BioAssayData/BioAssayDimension/Makefile.PL metacpan
BioAssayData/BioAssayMap/Makefile.PL metacpan
BioAssayData/BioAssayMapping/Makefile.PL metacpan
BioAssayData/BioDataCube/Makefile.PL metacpan
BioAssayData/BioDataTuples/Makefile.PL metacpan
BioAssayData/BioDataValues/Makefile.PL metacpan
BioAssayData/CompositeSequenceDimension/Makefile.PL metacpan
BioAssayData/DerivedBioAssayData/Makefile.PL metacpan
BioAssayData/DesignElementDimension/Makefile.PL metacpan
BioAssayData/DesignElementMap/Makefile.PL metacpan
BioAssayData/DesignElementMapping/Makefile.PL metacpan
BioAssayData/FeatureDimension/Makefile.PL metacpan
BioAssayData/Makefile.PL metacpan
BioAssayData/MeasuredBioAssayData/Makefile.PL metacpan
BioAssayData/QuantitationTypeDimension/Makefile.PL metacpan
BioAssayData/QuantitationTypeMap/Makefile.PL metacpan
BioAssayData/QuantitationTypeMapping/Makefile.PL metacpan
BioAssayData/ReporterDimension/Makefile.PL metacpan
BioAssayData/Transformation/Makefile.PL metacpan
BioEvent/BioEvent/Makefile.PL metacpan
BioEvent/Makefile.PL metacpan
BioEvent/Map/Makefile.PL metacpan
BioMaterial/BioMaterial/Makefile.PL metacpan
BioMaterial/BioMaterialMeasurement/Makefile.PL metacpan
BioMaterial/BioSample/Makefile.PL metacpan
BioMaterial/BioSource/Makefile.PL metacpan
BioMaterial/Compound/Makefile.PL metacpan
BioMaterial/CompoundMeasurement/Makefile.PL metacpan
BioMaterial/LabeledExtract/Makefile.PL metacpan
BioMaterial/Makefile.PL metacpan
BioMaterial/Treatment/Makefile.PL metacpan
BioSequence/BioSequence/Makefile.PL metacpan
BioSequence/Makefile.PL metacpan
BioSequence/SeqFeature/Makefile.PL metacpan
BioSequence/SeqFeatureLocation/Makefile.PL metacpan
BioSequence/SequencePosition/Makefile.PL metacpan
Describable/Makefile.PL metacpan
Description/Database/Makefile.PL metacpan
Description/DatabaseEntry/Makefile.PL metacpan
Description/Description/Makefile.PL metacpan
Description/ExternalReference/Makefile.PL metacpan
Description/Makefile.PL metacpan
Description/OntologyEntry/Makefile.PL metacpan
DesignElement/CompositeCompositeMap/Makefile.PL metacpan
DesignElement/CompositePosition/Makefile.PL metacpan
DesignElement/CompositeSequence/Makefile.PL metacpan
DesignElement/DesignElement/Makefile.PL metacpan
DesignElement/Feature/Makefile.PL metacpan
DesignElement/FeatureInformation/Makefile.PL metacpan
DesignElement/FeatureLocation/Makefile.PL metacpan
DesignElement/FeatureReporterMap/Makefile.PL metacpan
DesignElement/Makefile.PL metacpan
DesignElement/MismatchInformation/Makefile.PL metacpan
DesignElement/Position/Makefile.PL metacpan
DesignElement/Reporter/Makefile.PL metacpan
DesignElement/ReporterCompositeMap/Makefile.PL metacpan
DesignElement/ReporterPosition/Makefile.PL metacpan
Experiment/Experiment/Makefile.PL metacpan
Experiment/ExperimentDesign/Makefile.PL metacpan
Experiment/ExperimentalFactor/Makefile.PL metacpan
Experiment/FactorValue/Makefile.PL metacpan
Experiment/Makefile.PL metacpan
Extendable/Makefile.PL metacpan
HigherLevelAnalysis/BioAssayDataCluster/Makefile.PL metacpan
HigherLevelAnalysis/Makefile.PL metacpan
HigherLevelAnalysis/Node/Makefile.PL metacpan
HigherLevelAnalysis/NodeContents/Makefile.PL metacpan
HigherLevelAnalysis/NodeValue/Makefile.PL metacpan
Identifiable/Makefile.PL metacpan
MANIFEST metacpan
Makefile.PL metacpan
Measurement/ConcentrationUnit/Makefile.PL metacpan
Measurement/DistanceUnit/Makefile.PL metacpan
Measurement/Makefile.PL metacpan
Measurement/MassUnit/Makefile.PL metacpan
Measurement/Measurement/Makefile.PL metacpan
Measurement/QuantityUnit/Makefile.PL metacpan
Measurement/TemperatureUnit/Makefile.PL metacpan
Measurement/TimeUnit/Makefile.PL metacpan
Measurement/Unit/Makefile.PL metacpan
Measurement/VolumeUnit/Makefile.PL metacpan
NameValueType/Makefile.PL metacpan
Protocol/Hardware/Makefile.PL metacpan
Protocol/HardwareApplication/Makefile.PL metacpan
Protocol/Makefile.PL metacpan
Protocol/Parameter/Makefile.PL metacpan
Protocol/ParameterValue/Makefile.PL metacpan
Protocol/Parameterizable/Makefile.PL metacpan
Protocol/ParameterizableApplication/Makefile.PL metacpan
Protocol/Protocol/Makefile.PL metacpan
Protocol/ProtocolApplication/Makefile.PL metacpan
Protocol/Software/Makefile.PL metacpan
Protocol/SoftwareApplication/Makefile.PL metacpan
QuantitationType/ConfidenceIndicator/Makefile.PL metacpan
QuantitationType/DerivedSignal/Makefile.PL metacpan
QuantitationType/Error/Makefile.PL metacpan
QuantitationType/ExpectedValue/Makefile.PL metacpan
QuantitationType/Failed/Makefile.PL metacpan
QuantitationType/Makefile.PL metacpan
QuantitationType/MeasuredSignal/Makefile.PL metacpan
QuantitationType/PValue/Makefile.PL metacpan
QuantitationType/PresentAbsent/Makefile.PL metacpan
QuantitationType/QuantitationType/Makefile.PL metacpan
QuantitationType/Ratio/Makefile.PL metacpan
QuantitationType/SpecializedQuantitationType/Makefile.PL metacpan
QuantitationType/StandardQuantitationType/Makefile.PL metacpan
SQLUtils/Makefile.PL metacpan
XMLUtils/Makefile.PL metacpan