Bio-SamTools 1.07
Kwalitee Issues
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::DB::Bam::Pileup
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::DB::Bam::AlignWrapper, Bio::DB::Bam::FetchIterator, Bio::DB::Bam::Pileup, Bio::DB::Bam::PileupWrapper, Bio::DB::Bam::Query, Bio::DB::Bam::ReadIterator, Bio::DB::Bam::Target, Bio::DB::Sam::Constants, Bio::DB::Sam::Segment
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
Modules
Name | Abstract | Version | View |
---|---|---|---|
Bio::DB::Bam | metacpan | ||
Bio::DB::Bam::AlignWrapper | Add high-level methods to Bio::DB::Bam::Alignment | metacpan | |
Bio::DB::Bam::Alignment | The SAM/BAM alignment object | metacpan | |
Bio::DB::Bam::FetchIterator | metacpan | ||
Bio::DB::Bam::Pileup | Object passed to pileup() callback | metacpan | |
Bio::DB::Bam::PileupWrapper | Add high-level methods to Bio::DB::Bam::Pileup | metacpan | |
Bio::DB::Bam::Query | Object representing the query portion of a BAM/SAM alignment | metacpan | |
Bio::DB::Bam::ReadIterator | metacpan | ||
Bio::DB::Bam::SplitAlignmentPart | metacpan | ||
Bio::DB::Bam::Target | metacpan | ||
Bio::DB::Sam | Read SAM/BAM database files | 1.07 | metacpan |
Bio::DB::Sam::Constants | Constants for use with SAM/BAM | metacpan | |
Bio::DB::Sam::Fai | metacpan | ||
Bio::DB::Sam::Segment | metacpan | ||
Bio::DB::Sam::Segment::Iterator | metacpan | ||
Bio::SeqFeature::Coverage | metacpan |