Bio-HTSTools 1.01
- Released by
- RISHIDEV
- Version
- Release Date
- 2015-12-23
- Kwalitee
- 137.5
- Core Kwalitee
- 90.62
- LINKS
Bio-HTSTools 1.01 Deleted
Kwalitee Issues
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::DB::HTS::Pileup
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-HTSTools-1.01/lib/Bio/DB/HTS/Query.pm -- Around line 44: You forgot a '=back' before '=head1' Around line 67: '=item' outside of any '=over'
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::DB::HTS::AlignWrapper, Bio::DB::HTS::Constants, Bio::DB::HTS::FetchIterator, Bio::DB::HTS::Pileup, Bio::DB::HTS::PileupWrapper, Bio::DB::HTS::Query, Bio::DB::HTS::ReadIterator, Bio::DB::HTS::Segment, Bio::DB::HTS::Target
- no_unauthorized_packages
-
Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.
Error:
- Bio::SeqFeature::Coverage
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::DB::HTS | Read SAM/BAM/CRAM database files | 1.01 | metacpan |
| Bio::DB::HTS::AlignWrapper | Add high-level methods to Bio::DB::HTS::Alignment | metacpan | |
| Bio::DB::HTS::Alignment | The HTS alignment object | metacpan | |
| Bio::DB::HTS::Constants | Constants for use with SAM/BAM | metacpan | |
| Bio::DB::HTS::Fai | metacpan | ||
| Bio::DB::HTS::FetchIterator | metacpan | ||
| Bio::DB::HTS::Pileup | Object passed to pileup() callback | metacpan | |
| Bio::DB::HTS::PileupWrapper | Add high-level methods to Bio::DB::HTS::Pileup | metacpan | |
| Bio::DB::HTS::Query | Object representing the query portion of a BAM/SAM alignment | metacpan | |
| Bio::DB::HTS::ReadIterator | metacpan | ||
| Bio::DB::HTS::Segment | metacpan | ||
| Bio::DB::HTS::Segment::Iterator | metacpan | ||
| Bio::DB::HTS::SplitAlignmentPart | metacpan | ||
| Bio::DB::HTS::Target | Object representing the query portion of a BAM/SAM alignment in NATIVE alignment | metacpan | |
| Bio::DB::HTSfile | metacpan | ||
| Bio::SeqFeature::Coverage | metacpan |