Bio-Phylo 0.04
- Released by
- RVOSA
- Version
- Release Date
- 2005-08-21
- Kwalitee
- 146.88
- Core Kwalitee
- 100
- LINKS
Bio-Phylo 0.04 Deleted
Kwalitee Issues
No Core Issues.
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- no_invalid_versions
-
Fix the version numbers so that version::is_lax($version) returns true.
Error:
- lib/Bio/Phylo/Exceptions.pm: HASH(0x5609d465d9b0)
- lib/Bio/Phylo/Generator.pm: HASH(0x5609d4637020)
- lib/Bio/Phylo/Listable.pm: HASH(0x5609d4b51fe0)
- lib/Bio/Phylo/Matrices.pm: HASH(0x5609d4646630)
- lib/Bio/Phylo/Matrices/Datum.pm: HASH(0x5609d4b651d0)
- lib/Bio/Phylo/Matrices/Matrix.pm: HASH(0x5609d472d118)
- lib/Bio/Phylo/Parsers.pm: HASH(0x5609d46ba448)
- lib/Bio/Phylo/Parsers/Newick.pm: HASH(0x5609d4b3fce0)
- lib/Bio/Phylo/Parsers/Nexus.pm: HASH(0x5609d4a6d4f8)
- lib/Bio/Phylo/Parsers/Table.pm: HASH(0x5609d49eb848)
- lib/Bio/Phylo/Parsers/Taxlist.pm: HASH(0x5609d46b1be8)
- lib/Bio/Phylo/Taxa.pm: HASH(0x5609d468a230)
- lib/Bio/Phylo/Taxa/Taxon.pm: HASH(0x5609d459ba58)
- lib/Bio/Phylo/Trees.pm: HASH(0x5609d4a6d3d8)
- lib/Bio/Phylo/Trees/Node.pm: HASH(0x5609d464b6a0)
- lib/Bio/Phylo/Trees/Tree.pm: HASH(0x5609d4a5f770)
- lib/Bio/Phylo/Unparsers.pm: HASH(0x5609d4675c30)
- lib/Bio/Phylo/Unparsers/Newick.pm: HASH(0x5609d46ac188)
- lib/Bio/Phylo/Unparsers/Pagel.pm: HASH(0x5609d464b9d0)
- lib/Bio/Phylo/Unparsers/Svg.pm: HASH(0x5609d45e07a0)
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::Phylo | A base module for analyzing and manipulating phylogenetic trees. | 0.04 | metacpan |
| Bio::Phylo::Exceptions | Exception handling for Bio::Phylo::* | metacpan | |
| Bio::Phylo::Generator | An object-oriented module for generating random objects (phylogenetic trees, nodes). | metacpan | |
| Bio::Phylo::Listable | A base module for analyzing and manipulating phylogenetic trees. | metacpan | |
| Bio::Phylo::Matrices | An object-oriented module for matrices holding phylogenetic data | metacpan | |
| Bio::Phylo::Matrices::Datum | An object-oriented module for storing single observations. | metacpan | |
| Bio::Phylo::Matrices::Matrix | An object-oriented module for phylogenetic data. | metacpan | |
| Bio::Phylo::Parsers | A library for parsing phylogenetic data files and strings | metacpan | |
| Bio::Phylo::Parsers::Newick | A library for parsing phylogenetic trees in Newick format. | metacpan | |
| Bio::Phylo::Parsers::Nexus | A library for parsing Nexus files | metacpan | |
| Bio::Phylo::Parsers::Table | A library for parsing plain text tables. | metacpan | |
| Bio::Phylo::Parsers::Taxlist | A library for parsing plain text tables. | metacpan | |
| Bio::Phylo::Taxa | An object-oriented module for managing taxa. | metacpan | |
| Bio::Phylo::Taxa::Taxon | An object-oriented module for managing a single taxon. | metacpan | |
| Bio::Phylo::Trees | An object-oriented module for phylogenetic trees | metacpan | |
| Bio::Phylo::Trees::Node | An object-oriented module for nodes in phylogenetic trees. | metacpan | |
| Bio::Phylo::Trees::Tree | An object-oriented module for phylogenetic trees | metacpan | |
| Bio::Phylo::Unparsers | A library for stringifying phylogenetic data files and strings | metacpan | |
| Bio::Phylo::Unparsers::Newick | An object-oriented module for unparsing tree objects into Newick formatted strings. | metacpan | |
| Bio::Phylo::Unparsers::Pagel | An object-oriented module for unparsing tree objects into Newick formatted strings. | metacpan | |
| Bio::Phylo::Unparsers::Svg | An object-oriented module for unparsing tree objects into SVG vector drawings. | metacpan |