bioperl-network 1.5.2_005-RC
- Released by
- SENDU
- Version
- Release Date
- 2006-11-24
- Kwalitee
- 128.12
- Core Kwalitee
- 84.38
- LINKS
bioperl-network 1.5.2_005-RC Deleted
Kwalitee Issues
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- has_proper_version
-
Remove all letters from the version number. If you want to mark a release as a developer release, use the scheme 'Module-1.00_01'
- has_human_readable_license
-
Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- proper_libs
-
Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.
Error: Bio/Network/Edge.pm, Bio/Network/IO.pm, Bio/Network/IO/dip_tab.pm, Bio/Network/IO/psi.pm, Bio/Network/IO/psi/intact.pm, Bio/Network/Interaction.pm, Bio/Network/Node.pm, Bio/Network/ProteinNet.pm
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::Network::Edge, Bio::Network::IO, Bio::Network::IO::dip_tab, Bio::Network::IO::psi, Bio::Network::IO::psi::intact, Bio::Network::Interaction, Bio::Network::Node, Bio::Network::ProteinNet
- no_unauthorized_packages
-
Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.
Error:
- Bio::Network::Edge
- Bio::Network::IO
- Bio::Network::IO::dip_tab
- Bio::Network::IO::psi::intact
- Bio::Network::Interaction
- Bio::Network::Node
- Bio::Network::ProteinNet
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::Network::Edge | holds the names of pairs of Nodes | 1.005002005 | metacpan |
| Bio::Network::IO | Class for reading and writing biological network data. | 1.005002005 | metacpan |
| Bio::Network::IO::dip_tab | class for parsing interaction data in DIP tab-delimited format | 1.005002005 | metacpan |
| Bio::Network::IO::psi | 1.005002005 | metacpan | |
| Bio::Network::IO::psi::intact | module to handle variations in PSI MI format from the IntAct database | 1.005002005 | metacpan |
| Bio::Network::Interaction | describes a protein-protein interaction | 1.005002005 | metacpan |
| Bio::Network::Node | describe a Node, either a protein or protein complex | 1.005002005 | metacpan |
| Bio::Network::ProteinNet | a representation of a protein interaction graph. | 1.005002005 | metacpan |