Bio-ToolBox 1.43 Deleted
Kwalitee Issues
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::ToolBox
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-ToolBox-1.43/lib/Bio/ToolBox/parser/gff.pm -- Around line 89: You forgot a '=back' before '=head2' Around line 95: '=item' outside of any '=over'
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::ToolBox, Bio::ToolBox::Data, Bio::ToolBox::Data::Feature, Bio::ToolBox::Data::Stream, Bio::ToolBox::Data::core, Bio::ToolBox::Data::file, Bio::ToolBox::GeneTools, Bio::ToolBox::SeqFeature, Bio::ToolBox::big_helper, Bio::ToolBox::db_helper, Bio::ToolBox::db_helper::bam, Bio::ToolBox::db_helper::bigbed, Bio::ToolBox::db_helper::bigwig, Bio::ToolBox::db_helper::config, Bio::ToolBox::db_helper::seqfasta, Bio::ToolBox::db_helper::useq, Bio::ToolBox::db_helper::wiggle, Bio::ToolBox::parser::gff, Bio::ToolBox::parser::ucsc, Bio::ToolBox::utility
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 1.14,1.33,1.36,1.40,1.41,1.42,1.43
Modules
Name | Abstract | Version | View |
---|---|---|---|
Bio::ToolBox | Tools for querying and analysis of genomic data | 1.43 | metacpan |
Bio::ToolBox::Data | Reading, writing, and manipulating data structure | 1.43 | metacpan |
Bio::ToolBox::Data::Feature | Objects representing rows in a data table | 1.40 | metacpan |
Bio::ToolBox::Data::Iterator | metacpan | ||
Bio::ToolBox::Data::Stream | Read, Write, and Manipulate Data File Line by Line | 1.41 | metacpan |
Bio::ToolBox::Data::core | Common functions to Bio:ToolBox::Data family | 1.40 | metacpan |
Bio::ToolBox::Data::file | File functions to Bio:ToolBox::Data family | 1.41 | metacpan |
Bio::ToolBox::GeneTools | SeqFeature agnostic methods for working with gene models | 1.41 | metacpan |
Bio::ToolBox::SeqFeature | Fast, simple SeqFeature implementation | 1.43 | metacpan |
Bio::ToolBox::big_helper | 1.43 | metacpan | |
Bio::ToolBox::db_helper | 1.40 | metacpan | |
Bio::ToolBox::db_helper::bam | 1.33 | metacpan | |
Bio::ToolBox::db_helper::bigbed | 1.33 | metacpan | |
Bio::ToolBox::db_helper::bigwig | 1.33 | metacpan | |
Bio::ToolBox::db_helper::config | 1.14 | metacpan | |
Bio::ToolBox::db_helper::seqfasta | 1.36 | metacpan | |
Bio::ToolBox::db_helper::useq | 1.33 | metacpan | |
Bio::ToolBox::db_helper::wiggle | 1.14 | metacpan | |
Bio::ToolBox::parser::gff | parse GFF3, GTF, and GFF files | 1.43 | metacpan |
Bio::ToolBox::parser::ucsc | Parser for UCSC genePred, refFlat, etc formats | 1.42 | metacpan |
Bio::ToolBox::parser::ucsc::builder | metacpan | ||
Bio::ToolBox::utility | common utility functions for Bio::ToolBox | 1.36 | metacpan |