Kwalitee Issues


Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.


Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.


  • MANIFEST (20) does not match dist (99):
  • Missing in MANIFEST: .RData, data/420_test.txt, data/b22_nrab1000, data/block0.pdf, data/block0.png, data/block1.pdf, data/block1.png, data/block10.pdf, data/block10.png, data/block11.pdf, data/block11.png, data/block12.pdf, data/block12.png, data/block13.pdf, data/block13.png, data/block2.pdf, data/block2.png, data/block3.pdf, data/block3.png, data/block4.pdf, data/block4.png, data/block5.pdf, data/block5.png, data/block6.pdf, data/block6.png, data/block7.pdf, data/block7.png, data/block8.pdf, data/block8.png, data/block9.pdf, data/block9.png, data/cell_location/1group.txt, data/cell_location/2group.txt, data/cell_location/2test.txt, data/cell_location/4group.txt, data/cell_location/5group.txt, data/cell_location/7group.txt, data/cell_location/8group.txt, data/cell_location/endosomes.txt, data/cell_location/golgi.txt, data/nrab1000, data/nrab1000.txt, data/p22_rab1000_80, data/rab1000_80_22.txt, data/tnrab1000, ignore.txt, out, out_consensus, scripts/.RData, scripts/, scripts/cw.tmp.dnd, scripts/out, scripts/out_consensus, scripts/, scripts/test.pp, scripts/test10.pp, scripts/test11.pp, scripts/test12.pp, scripts/test13.pp, scripts/test14.pp, scripts/test15.pp, scripts/test16.pp, scripts/test17.pp, scripts/test18.pp, scripts/test19.pp, scripts/test2.pp, scripts/test20.pp, scripts/test21.pp, scripts/test3.pp, scripts/test4.pp, scripts/test5.pp, scripts/test6.pp, scripts/test7.pp, scripts/test8.pp, scripts/test9.pp, t/10.length.t, t/10.sequence.t, t/10.sequences.t, t/


List all used modules in META.yml requires


  • Bio::Perl
  • Bio::Seq
  • Bio::SeqIO
  • Bio::Tools::Run::Alignment::TCoffee
  • Class::Std
  • Class::Std::Utils
  • DBIx::MySperql
  • Module::Runtime


Add a META.json to the distribution. Your buildtool should be able to autogenerate it.


Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.


Modify the stub. You might need to modify other stubs (for name, synopsis, license, etc) as well.

Error: BioX::SeqUtils::Promoter::Annotations::Base


This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.


Name Abstract Version View
BioX::SeqUtils::Promoter 0.001001 metacpan
BioX::SeqUtils::Promoter::Alignment gets sequences and performs mulitple alignement 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations identification of promoter elements in sequence ,sequences, or alignments 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations::Base [One line description of module's purpose here] 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations::CG identification of CpG islands, CG rich regions 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations::Consensus identification core promoter elements via consensus sequences 0.001001 metacpan
BioX::SeqUtils::Promoter::Base 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes Types of output files to be saved 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes::Base 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes::RImage pdf output file with visually tagged promoter elements via R 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes::Text MSA output in text file format 0.001001 metacpan
BioX::SeqUtils::Promoter::Sequence specific sequences and colors to be associated with them 0.001001 metacpan
BioX::SeqUtils::Promoter::Sequences collection object of Sequences 0.001001 metacpan

Other Files

Build.PL metacpan
Changes metacpan
MANIFEST metacpan
Makefile.PL metacpan
README metacpan