BioX-SeqUtils-Promoter 0.1.1
- Released by
- CSTEPHENE
- Version
- Release Date
- 2010-08-27
- Kwalitee
- 140.62
- Core Kwalitee
- 90.62
- LINKS
BioX-SeqUtils-Promoter 0.1.1 Latest
Kwalitee Issues
- has_meta_yml
-
Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.
- manifest_matches_dist
-
Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.
Error:
- MANIFEST (20) does not match dist (99):
- Missing in MANIFEST: .RData, data/420_test.txt, data/b22_nrab1000, data/block0.pdf, data/block0.png, data/block1.pdf, data/block1.png, data/block10.pdf, data/block10.png, data/block11.pdf, data/block11.png, data/block12.pdf, data/block12.png, data/block13.pdf, data/block13.png, data/block2.pdf, data/block2.png, data/block3.pdf, data/block3.png, data/block4.pdf, data/block4.png, data/block5.pdf, data/block5.png, data/block6.pdf, data/block6.png, data/block7.pdf, data/block7.png, data/block8.pdf, data/block8.png, data/block9.pdf, data/block9.png, data/cell_location/1group.txt, data/cell_location/2group.txt, data/cell_location/2test.txt, data/cell_location/4group.txt, data/cell_location/5group.txt, data/cell_location/7group.txt, data/cell_location/8group.txt, data/cell_location/endosomes.txt, data/cell_location/golgi.txt, data/nrab1000, data/nrab1000.txt, data/p22_rab1000_80, data/rab1000_80_22.txt, data/tnrab1000, ignore.txt, out, out_consensus, scripts/.RData, scripts/convert.sh, scripts/cw.tmp.dnd, scripts/out, scripts/out_consensus, scripts/tcof.pl, scripts/test.pp, scripts/test10.pp, scripts/test11.pp, scripts/test12.pp, scripts/test13.pp, scripts/test14.pp, scripts/test15.pp, scripts/test16.pp, scripts/test17.pp, scripts/test18.pp, scripts/test19.pp, scripts/test2.pp, scripts/test20.pp, scripts/test21.pp, scripts/test3.pp, scripts/test4.pp, scripts/test5.pp, scripts/test6.pp, scripts/test7.pp, scripts/test8.pp, scripts/test9.pp, t/10.length.t, t/10.sequence.t, t/10.sequences.t, t/11.new.t
- prereq_matches_use
-
List all used modules in META.yml requires
Error:
- Bio::Perl
- Bio::Seq
- Bio::SeqIO
- Bio::Tools::Run::Alignment::TCoffee
- Class::Std
- Class::Std::Utils
- DBIx::MySperql
- Module::Runtime
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- no_abstract_stub_in_pod
-
Modify the stub. You might need to modify other stubs (for name, synopsis, license, etc) as well.
Error: BioX::SeqUtils::Promoter::Annotations::Base
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
- configure_prereq_matches_use
-
List all modules used in the Makefile.PL/Build.PL in META.yml configure_requires
Error:
- Module::Build
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| BioX::SeqUtils::Promoter | 0.001001 | metacpan | |
| BioX::SeqUtils::Promoter::Alignment | gets sequences and performs mulitple alignement | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::Annotations | identification of promoter elements in sequence ,sequences, or alignments | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::Annotations::Base | [One line description of module's purpose here] | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::Annotations::CG | identification of CpG islands, CG rich regions | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::Annotations::Consensus | identification core promoter elements via consensus sequences | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::Base | 0.001001 | metacpan | |
| BioX::SeqUtils::Promoter::SaveTypes | Types of output files to be saved | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::SaveTypes::Base | 0.001001 | metacpan | |
| BioX::SeqUtils::Promoter::SaveTypes::RImage | pdf output file with visually tagged promoter elements via R | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::SaveTypes::Text | MSA output in text file format | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::Sequence | specific sequences and colors to be associated with them | 0.001001 | metacpan |
| BioX::SeqUtils::Promoter::Sequences | collection object of Sequences | 0.001001 | metacpan |