Kwalitee Issues

has_meta_yml

Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error:

  • MANIFEST (20) does not match dist (99):
  • Missing in MANIFEST: .RData, data/420_test.txt, data/b22_nrab1000, data/block0.pdf, data/block0.png, data/block1.pdf, data/block1.png, data/block10.pdf, data/block10.png, data/block11.pdf, data/block11.png, data/block12.pdf, data/block12.png, data/block13.pdf, data/block13.png, data/block2.pdf, data/block2.png, data/block3.pdf, data/block3.png, data/block4.pdf, data/block4.png, data/block5.pdf, data/block5.png, data/block6.pdf, data/block6.png, data/block7.pdf, data/block7.png, data/block8.pdf, data/block8.png, data/block9.pdf, data/block9.png, data/cell_location/1group.txt, data/cell_location/2group.txt, data/cell_location/2test.txt, data/cell_location/4group.txt, data/cell_location/5group.txt, data/cell_location/7group.txt, data/cell_location/8group.txt, data/cell_location/endosomes.txt, data/cell_location/golgi.txt, data/nrab1000, data/nrab1000.txt, data/p22_rab1000_80, data/rab1000_80_22.txt, data/tnrab1000, ignore.txt, out, out_consensus, scripts/.RData, scripts/convert.sh, scripts/cw.tmp.dnd, scripts/out, scripts/out_consensus, scripts/tcof.pl, scripts/test.pp, scripts/test10.pp, scripts/test11.pp, scripts/test12.pp, scripts/test13.pp, scripts/test14.pp, scripts/test15.pp, scripts/test16.pp, scripts/test17.pp, scripts/test18.pp, scripts/test19.pp, scripts/test2.pp, scripts/test20.pp, scripts/test21.pp, scripts/test3.pp, scripts/test4.pp, scripts/test5.pp, scripts/test6.pp, scripts/test7.pp, scripts/test8.pp, scripts/test9.pp, t/10.length.t, t/10.sequence.t, t/10.sequences.t, t/11.new.t

prereq_matches_use

List all used modules in META.yml requires

Error:

  • Bio::Perl
  • Bio::Seq
  • Bio::SeqIO
  • Bio::Tools::Run::Alignment::TCoffee
  • Class::Std
  • Class::Std::Utils
  • DBIx::MySperql
  • Module::Runtime

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

no_abstract_stub_in_pod

Modify the stub. You might need to modify other stubs (for name, synopsis, license, etc) as well.

Error: BioX::SeqUtils::Promoter::Annotations::Base

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name Abstract Version View
BioX::SeqUtils::Promoter 0.001001 metacpan
BioX::SeqUtils::Promoter::Alignment gets sequences and performs mulitple alignement 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations identification of promoter elements in sequence ,sequences, or alignments 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations::Base [One line description of module's purpose here] 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations::CG identification of CpG islands, CG rich regions 0.001001 metacpan
BioX::SeqUtils::Promoter::Annotations::Consensus identification core promoter elements via consensus sequences 0.001001 metacpan
BioX::SeqUtils::Promoter::Base 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes Types of output files to be saved 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes::Base 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes::RImage pdf output file with visually tagged promoter elements via R 0.001001 metacpan
BioX::SeqUtils::Promoter::SaveTypes::Text MSA output in text file format 0.001001 metacpan
BioX::SeqUtils::Promoter::Sequence specific sequences and colors to be associated with them 0.001001 metacpan
BioX::SeqUtils::Promoter::Sequences collection object of Sequences 0.001001 metacpan

Other Files

Build.PL metacpan
Changes metacpan
MANIFEST metacpan
Makefile.PL metacpan
README metacpan