Bio::Community |
A biological community |
0.001007 |
metacpan |
Bio::Community::Alpha |
Calculate the alpha diversity of a community |
|
metacpan |
Bio::Community::IO |
Read and write files that describe communities |
|
metacpan |
Bio::Community::IO::Driver::biom |
Driver to read and write files in the sparse BIOM format |
|
metacpan |
Bio::Community::IO::Driver::dummy |
Dummy driver (does nothing) |
|
metacpan |
Bio::Community::IO::Driver::gaas |
Driver to read and write files in the GAAS format |
|
metacpan |
Bio::Community::IO::Driver::generic |
Driver to read and write files in a generic tab-delimited site-by-species table format |
|
metacpan |
Bio::Community::IO::Driver::qiime |
Driver to read and write files in the QIIME format |
|
metacpan |
Bio::Community::IO::Driver::unifrac |
Driver to read and write files in the (Fast)Unifrac format |
|
metacpan |
Bio::Community::IO::FormatGuesser |
Determine the format used by a community file |
|
metacpan |
Bio::Community::Member |
The basic constituent of a biological community |
|
metacpan |
Bio::Community::Meta |
A metacommunity, or group of communities |
|
metacpan |
Bio::Community::Meta::Beta |
Beta diversity or distance separating communities |
|
metacpan |
Bio::Community::Meta::Gamma |
Calculate the gamma diversity of a metacommunity |
|
metacpan |
Bio::Community::Role::Classified |
Role for objects that have a taxonomic classification |
|
metacpan |
Bio::Community::Role::Described |
Role for objects that have a description |
|
metacpan |
Bio::Community::Role::IO |
Role for IO layer |
|
metacpan |
Bio::Community::Role::Locked |
Role for objects that can be locked (made read-only) |
|
metacpan |
Bio::Community::Role::PRNG |
Role for objects that use a pseudo-random number generator |
|
metacpan |
Bio::Community::Role::Sequenced |
Role for objects that have a sequence |
|
metacpan |
Bio::Community::Role::Table |
Role to read/write data tables and provide random
access to their cells |
|
metacpan |
Bio::Community::Role::Weighted |
Role for objects that have a weight |
|
metacpan |
Bio::Community::TaxonomyUtils |
Functions for manipulating taxonomic lineages |
|
metacpan |
Bio::Community::Tools::Accumulator |
Species accumulation curves |
|
metacpan |
Bio::Community::Tools::IdConverter |
Various methods to convert member ID |
|
metacpan |
Bio::Community::Tools::Rarefier |
Normalize communities by count |
|
metacpan |
Bio::Community::Tools::Sampler |
Sample organisms according to their abundance |
|
metacpan |
Bio::Community::Tools::ShrapnelCleaner |
Remove low-count, low-abundance community members |
|
metacpan |
Bio::Community::Tools::Summarizer |
Create a summary of communities |
|
metacpan |
Bio::Community::Tools::Transformer |
Arbitrary transformation of member counts |
|
metacpan |
Bio::Community::Types |
Data type definitions |
|
metacpan |