CPANTS

App-Sandy 0.17

Kwalitee Issues

This is not the latest release. The following issues may have already been fixed in the newer releases.

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: App::Sandy, App::Sandy::CLI, App::Sandy::CLI::App, App::Sandy::CLI::Command, App::Sandy::Command::Custom, App::Sandy::Command::Expression, App::Sandy::Command::Expression::Add, App::Sandy::Command::Expression::Remove, App::Sandy::Command::Expression::Restore, App::Sandy::Command::Genome, App::Sandy::Command::Quality, App::Sandy::Command::Quality::Add, App::Sandy::Command::Quality::Remove, App::Sandy::Command::Quality::Restore, App::Sandy::Command::Transcriptome, App::Sandy::Command::Version, App::Sandy::DB, App::Sandy::DB::Handle::Expression, App::Sandy::DB::Handle::Quality, App::Sandy::Fastq, App::Sandy::Fastq::PairedEnd, App::Sandy::Fastq::SingleEnd, App::Sandy::InterlaceProcesses, App::Sandy::Quality, App::Sandy::Read, App::Sandy::Read::PairedEnd, App::Sandy::Read::SingleEnd, App::Sandy::Role::Digest, App::Sandy::Role::IO, App::Sandy::Role::ParseArgv, App::Sandy::Role::RunTimeTemplate, App::Sandy::Simulator, App::Sandy::WeightedRaffle

1 Extra Issue

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

1 Experimental Issue

meta_yml_has_provides: Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name	Abstract	Version	View
App::Sandy	App builder that simulates single-end and paired-end reads.	0.17	metacpan
App::Sandy::Base	Policy and base module to App::Sandy project.	0.17	metacpan
App::Sandy::CLI	Base class for command line interface.	0.17	metacpan
App::Sandy::CLI::App	App::Sandy::CLI subclass for command line application interface.	0.17	metacpan
App::Sandy::CLI::Command	App::Sandy::CLI subclass for commands interface	0.17	metacpan
App::Sandy::Command::Custom	simulate command class. Simulate a custom sequencing	0.17	metacpan
App::Sandy::Command::Expression	expression command class. Manage expression-matrix database.	0.17	metacpan
App::Sandy::Command::Expression::Add	expression subcommand class. Add an expression-matrix to the database.	0.17	metacpan
App::Sandy::Command::Expression::Remove	expression subcommand class. Remove an expression-matrix from database.	0.17	metacpan
App::Sandy::Command::Expression::Restore	expression subcommand class. Restore database.	0.17	metacpan
App::Sandy::Command::Genome	simulate command class. Simulate genome sequencing	0.17	metacpan
App::Sandy::Command::Quality	quality command class. Manage quality profile database.	0.17	metacpan
App::Sandy::Command::Quality::Add	quality subcommand class. Add a quality profile to the database.	0.17	metacpan
App::Sandy::Command::Quality::Remove	quality subcommand class. Remove a quality profile from database.	0.17	metacpan
App::Sandy::Command::Quality::Restore	quality subcommand class. Restore database.	0.17	metacpan
App::Sandy::Command::Transcriptome	simulate command class. Simulate transcriptome sequencing	0.17	metacpan
App::Sandy::Command::Version	version command class. Print version	0.17	metacpan
App::Sandy::DB	Singleton class to manage database	0.17	metacpan
App::Sandy::DB::Handle::Expression	Class to handle expression-matrix database schemas.	0.17	metacpan
App::Sandy::DB::Handle::Quality	Class to handle quality database schemas.	0.17	metacpan
App::Sandy::DB::Schema			metacpan
App::Sandy::DB::Schema::Result::ExpressionMatrix			metacpan
App::Sandy::DB::Schema::Result::QualityProfile			metacpan
App::Sandy::Fastq	Base class to simulate fastq entries	0.17	metacpan
App::Sandy::Fastq::PairedEnd	App::Sandy::Fastq subclass for simulate paired-end fastq entries.	0.17	metacpan
App::Sandy::Fastq::SingleEnd	App::Sandy::Fastq subclass for simulate single-end fastq entries.	0.17	metacpan
App::Sandy::InterlaceProcesses	Interlaces the processe id for differents processes, actually for parent, child processes.	0.17	metacpan
App::Sandy::Quality	Class to simulate quality entries	0.17	metacpan
App::Sandy::Read	Base class to simulate reads	0.17	metacpan
App::Sandy::Read::PairedEnd	App::Sandy::Read subclass for simulate paired-end reads.	0.17	metacpan
App::Sandy::Read::SingleEnd	App::Sandy::Read subclass for simulate single-end reads.	0.17	metacpan
App::Sandy::Role::Digest	Wrapper on Simulator class for genome/transcriptome sequencing	0.17	metacpan
App::Sandy::Role::IO	Input and output custom wrappers.	0.17	metacpan
App::Sandy::Role::ParseArgv	Getopt::Long wrapper.	0.17	metacpan
App::Sandy::Role::RunTimeTemplate	Extends class with runtime printf like function	0.17	metacpan
App::Sandy::Simulator	Class responsible to make the simulation	0.17	metacpan
App::Sandy::Types	Moose type constraints for App::Sandy project	0.17	metacpan
App::Sandy::WeightedRaffle	Weighted raffle interface.	0.17	metacpan

Other Files


Changes	metacpan
MANIFEST	metacpan
META.json	metacpan
META.yml	metacpan
Makefile.PL	metacpan
README.md	metacpan
dist.ini	metacpan