Bio-Das-ProServer 2.5

Released by
RPETTETT
Version
Release Date
2007-01-27
Kwalitee
118.75
Core Kwalitee
78.12
LINKS

Kwalitee Issues

has_meta_yml

Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.

has_human_readable_license

Add a section called "LICENSE" to the documentation, or add a file named LICENSE to the distribution.

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error:

  • MANIFEST (176) does not match dist (177):
  • Missing in MANIFEST: lib/Bio/Das/ProServer/SourceAdaptor/Transport/.#dbi.pm

has_abstract_in_pod

Provide a short description in the NAME section of the pod (after the module name followed by a hyphen) at least for the main module of this distribution.

prereq_matches_use

List all used modules in META.yml requires

Error:

  • Bio::DB::Flat
  • Bio::SeqIO
  • Config::IniFiles
  • DBI
  • HTML::Entities
  • HTTP::Request
  • LWP::UserAgent

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::Das::ProServer::SourceAdaptor::CNVDB, Bio::Das::ProServer::SourceAdaptor::Transport::csv, Bio::Das::ProServer::SourceAdaptor::Transport::ensembl, Bio::Das::ProServer::SourceAdaptor::Transport::getz, Bio::Das::ProServer::SourceAdaptor::Transport::getzc, Bio::Das::ProServer::SourceAdaptor::Transport::pfetch, Bio::Das::ProServer::SourceAdaptor::agp, Bio::Das::ProServer::SourceAdaptor::all_in_group, Bio::Das::ProServer::SourceAdaptor::cosmic, Bio::Das::ProServer::SourceAdaptor::cosmic_genomic, Bio::Das::ProServer::SourceAdaptor::cosmic_ncbi_35, Bio::Das::ProServer::SourceAdaptor::ens_genexrefs, Bio::Das::ProServer::SourceAdaptor::ens_ncbi_35_morbid, Bio::Das::ProServer::SourceAdaptor::ensembl_upload, Bio::Das::ProServer::SourceAdaptor::ensgenes, Bio::Das::ProServer::SourceAdaptor::gene_pro_db, Bio::Das::ProServer::SourceAdaptor::genetarget_db, Bio::Das::ProServer::SourceAdaptor::genetrap, Bio::Das::ProServer::SourceAdaptor::gensat, Bio::Das::ProServer::SourceAdaptor::grouped_db, Bio::Das::ProServer::SourceAdaptor::gtfdb, Bio::Das::ProServer::SourceAdaptor::haplotype, Bio::Das::ProServer::SourceAdaptor::hs34_20_clone, Bio::Das::ProServer::SourceAdaptor::hs35_clone, Bio::Das::ProServer::SourceAdaptor::image, Bio::Das::ProServer::SourceAdaptor::indel_Zv4, Bio::Das::ProServer::SourceAdaptor::indel_Zv5, Bio::Das::ProServer::SourceAdaptor::mirna, Bio::Das::ProServer::SourceAdaptor::mitocheck_oligos, Bio::Das::ProServer::SourceAdaptor::mungeonscore, Bio::Das::ProServer::SourceAdaptor::pdbStructure, Bio::Das::ProServer::SourceAdaptor::pfam, Bio::Das::ProServer::SourceAdaptor::pfamAlign, Bio::Das::ProServer::SourceAdaptor::pfamFullAlign, Bio::Das::ProServer::SourceAdaptor::pfamOtherFeatures, Bio::Das::ProServer::SourceAdaptor::pfamSeedAlign, Bio::Das::ProServer::SourceAdaptor::pig_ends_all_35, Bio::Das::ProServer::SourceAdaptor::ppid, Bio::Das::ProServer::SourceAdaptor::simplescore_db, Bio::Das::ProServer::SourceAdaptor::snp, Bio::Das::ProServer::SourceAdaptor::snp_Zv4, Bio::Das::ProServer::SourceAdaptor::snp_Zv5, Bio::Das::ProServer::SourceAdaptor::sts, Bio::Das::ProServer::SourceAdaptor::styletest, Bio::Das::ProServer::SourceAdaptor::team87_designs, Bio::Das::ProServer::SourceAdaptor::tilepath, Bio::Das::ProServer::SourceAdaptor::trace, Bio::Das::ProServer::SourceAdaptor::upload_euf, Bio::Das::ProServer::SourceAdaptor::zfish_exons, Bio::Das::ProServer::SourceAdaptor::zfmodels_array, Bio::Das::ProServer::SourceAdaptor::zfmodels_est, Bio::Das::ProServer::SourceAdaptor::zfmodels_insmut, Bio::Das::ProServer::SourceAdaptor::zfmodels_morpholino, Bio::Das::ProServer::SourceAdaptor::zfmodels_tilling, Bio::Das::ProServer::SourceHydra::dbi, Bio::Das::ProServer::SourceHydra::ppid, Bio::Das::ProServer::SourceHydra::simplescoreh_db

no_unauthorized_packages

Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.

Error:

  • Bio::Das::ProServer::Config
  • Bio::Das::ProServer::SourceAdaptor
  • Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio
  • Bio::Das::ProServer::SourceAdaptor::Transport::dbi
  • Bio::Das::ProServer::SourceAdaptor::Transport::file
  • Bio::Das::ProServer::SourceAdaptor::Transport::generic
  • Bio::Das::ProServer::SourceAdaptor::Transport::getz
  • Bio::Das::ProServer::SourceAdaptor::Transport::getzc
  • Bio::Das::ProServer::SourceAdaptor::Transport::oracle
  • Bio::Das::ProServer::SourceAdaptor::Transport::wgetz
  • Bio::Das::ProServer::SourceAdaptor::agp
  • Bio::Das::ProServer::SourceAdaptor::bioseq
  • Bio::Das::ProServer::SourceAdaptor::cosmic
  • Bio::Das::ProServer::SourceAdaptor::gensat
  • Bio::Das::ProServer::SourceAdaptor::haplotype
  • Bio::Das::ProServer::SourceAdaptor::image
  • Bio::Das::ProServer::SourceAdaptor::interpro
  • Bio::Das::ProServer::SourceAdaptor::simple
  • Bio::Das::ProServer::SourceAdaptor::snp
  • Bio::Das::ProServer::SourceAdaptor::sts
  • Bio::Das::ProServer::SourceAdaptor::swissprot
  • Bio::Das::ProServer::SourceAdaptor::trace

test_prereq_matches_use

List all modules used in the test suite in META.yml test_requires

Error:

  • Test::Pod::Coverage

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name Abstract Version View
Bio::Das::ProServer::Config 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::CNVDB metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::csv metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::dbi 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::ensembl metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::file 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::generic 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::getz metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::getzc metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::oracle 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::pfetch 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::wgetz metacpan
Bio::Das::ProServer::SourceAdaptor::agp metacpan
Bio::Das::ProServer::SourceAdaptor::all_in_group metacpan
Bio::Das::ProServer::SourceAdaptor::bioseq metacpan
Bio::Das::ProServer::SourceAdaptor::cegg_dbi metacpan
Bio::Das::ProServer::SourceAdaptor::chori_243 metacpan
Bio::Das::ProServer::SourceAdaptor::cosmic metacpan
Bio::Das::ProServer::SourceAdaptor::cosmic_genomic metacpan
Bio::Das::ProServer::SourceAdaptor::cosmic_ncbi_35 metacpan
Bio::Das::ProServer::SourceAdaptor::decipher 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::ens_genexrefs metacpan
Bio::Das::ProServer::SourceAdaptor::ens_ncbi_35_morbid metacpan
Bio::Das::ProServer::SourceAdaptor::ensembl_upload metacpan
Bio::Das::ProServer::SourceAdaptor::ensgenes metacpan
Bio::Das::ProServer::SourceAdaptor::gene_pro_db metacpan
Bio::Das::ProServer::SourceAdaptor::genetarget_db metacpan
Bio::Das::ProServer::SourceAdaptor::genetrap metacpan
Bio::Das::ProServer::SourceAdaptor::gensat metacpan
Bio::Das::ProServer::SourceAdaptor::grouped_db metacpan
Bio::Das::ProServer::SourceAdaptor::gtfdb metacpan
Bio::Das::ProServer::SourceAdaptor::haplotype metacpan
Bio::Das::ProServer::SourceAdaptor::hs34_20_clone metacpan
Bio::Das::ProServer::SourceAdaptor::hs35_clone metacpan
Bio::Das::ProServer::SourceAdaptor::hugo 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::image metacpan
Bio::Das::ProServer::SourceAdaptor::indel_Zv4 metacpan
Bio::Das::ProServer::SourceAdaptor::indel_Zv5 metacpan
Bio::Das::ProServer::SourceAdaptor::interpro 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::jgi_dbi metacpan
Bio::Das::ProServer::SourceAdaptor::mirna metacpan
Bio::Das::ProServer::SourceAdaptor::mitocheck_oligos metacpan
Bio::Das::ProServer::SourceAdaptor::mungeonscore metacpan
Bio::Das::ProServer::SourceAdaptor::pdbStructure metacpan
Bio::Das::ProServer::SourceAdaptor::pfam metacpan
Bio::Das::ProServer::SourceAdaptor::pfamAlign metacpan
Bio::Das::ProServer::SourceAdaptor::pfamFullAlign metacpan
Bio::Das::ProServer::SourceAdaptor::pfamOtherFeatures metacpan
Bio::Das::ProServer::SourceAdaptor::pfamSeedAlign metacpan
Bio::Das::ProServer::SourceAdaptor::pig_ends_all_35 metacpan
Bio::Das::ProServer::SourceAdaptor::ppid metacpan
Bio::Das::ProServer::SourceAdaptor::proxy 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::simple 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::simpledb 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::simplescore_db metacpan
Bio::Das::ProServer::SourceAdaptor::snp metacpan
Bio::Das::ProServer::SourceAdaptor::snp_Zv4 metacpan
Bio::Das::ProServer::SourceAdaptor::snp_Zv5 metacpan
Bio::Das::ProServer::SourceAdaptor::sts metacpan
Bio::Das::ProServer::SourceAdaptor::styletest metacpan
Bio::Das::ProServer::SourceAdaptor::swissprot 2.050 metacpan
Bio::Das::ProServer::SourceAdaptor::team87_designs metacpan
Bio::Das::ProServer::SourceAdaptor::tilepath metacpan
Bio::Das::ProServer::SourceAdaptor::trace metacpan
Bio::Das::ProServer::SourceAdaptor::upload_euf metacpan
Bio::Das::ProServer::SourceAdaptor::zfish_exons metacpan
Bio::Das::ProServer::SourceAdaptor::zfmodels_array metacpan
Bio::Das::ProServer::SourceAdaptor::zfmodels_est metacpan
Bio::Das::ProServer::SourceAdaptor::zfmodels_insmut metacpan
Bio::Das::ProServer::SourceAdaptor::zfmodels_morpholino metacpan
Bio::Das::ProServer::SourceAdaptor::zfmodels_tilling metacpan
Bio::Das::ProServer::SourceHydra 2.050 metacpan
Bio::Das::ProServer::SourceHydra::dbi metacpan
Bio::Das::ProServer::SourceHydra::ppid metacpan
Bio::Das::ProServer::SourceHydra::simplescoreh_db metacpan

Other Files
Changes metacpan
MANIFEST metacpan
Makefile.PL metacpan
README metacpan