Bio-Das-ProServer 2.8
- Released by
- RPETTETT
- Version
- Release Date
- 2008-03-13
- Kwalitee
- 137.5
- Core Kwalitee
- 93.75
- LINKS
Bio-Das-ProServer 2.8 Deleted
Kwalitee Issues
- meta_yml_conforms_to_known_spec
-
Take a look at the META.yml Spec at https://metacpan.org/pod/CPAN::Meta::History::Meta_1_4 (for version 1.4) or https://metacpan.org/pod/CPAN::Meta::Spec (for version 2), and change your META.yml accordingly.
Error: License '<undef>' is invalid (license) [Validation: 1.3];Missing mandatory field, 'abstract' (abstract) [Validation: 1.3];Missing mandatory field, 'license' (license) [Validation: 1.3];value is an undefined string (abstract) [Validation: 1.3]
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- no_unauthorized_packages
-
Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.
Error:
- Bio::Das::ProServer::Config
- Bio::Das::ProServer::SourceAdaptor
- Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio
- Bio::Das::ProServer::SourceAdaptor::Transport::dbi
- Bio::Das::ProServer::SourceAdaptor::Transport::file
- Bio::Das::ProServer::SourceAdaptor::Transport::generic
- Bio::Das::ProServer::SourceAdaptor::Transport::getz
- Bio::Das::ProServer::SourceAdaptor::Transport::oracle
- Bio::Das::ProServer::SourceAdaptor::Transport::wgetz
- Bio::Das::ProServer::SourceAdaptor::bioseq
- Bio::Das::ProServer::SourceAdaptor::simple
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 453,453.,457.
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::Das::ProServer | 457. | metacpan | |
| Bio::Das::ProServer::Authenticator | authenticates DAS requests | 453 | metacpan |
| Bio::Das::ProServer::Authenticator::http | authenticates DAS requests by issuing requests to a remote authority | 453 | metacpan |
| Bio::Das::ProServer::Authenticator::ip | authenticates DAS requests by IP address | 453 | metacpan |
| Bio::Das::ProServer::Config | configuration parsing and hooks | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor | base class for sources | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio | A ProServer transport module that works off any flat file that Bio::SeqIO supports. | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::Transport::csv | Comma-separated-values transport layer | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::Transport::dbi | A DBI transport layer (actually customised for MySQL) | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::Transport::ensembl | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::Transport::file | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::Transport::generic | A generic transport layer for deriving others from | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::Transport::getz | Pulls features over command-line SRS/getz transport | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::Transport::oracle | Oracle/DBI transport layer | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::Transport::sif | 453 | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::Transport::wgetz | A ProServer transport module for wgetz (SRS web access) | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::all_in_group | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::bioseq | A ProServer source adaptor for converting Bio::Seq objects into DAS features. See also "Transport/bioseqio.pm". | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::grouped_db | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::proxy | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::sif | 453 | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::simple | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::simple_interaction | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::simple_volmap | 453. | metacpan | |
| Bio::Das::ProServer::SourceAdaptor::simpledb | Builds simple DAS features from a database | 453. | metacpan |
| Bio::Das::ProServer::SourceAdaptor::styletest | 453. | metacpan | |
| Bio::Das::ProServer::SourceHydra | A runtime factory for B::D::P::SourceAdaptors | 453. | metacpan |
| Bio::Das::ProServer::SourceHydra::dbi | A database-backed implementation of B::D::P::SourceHydra | 453. | metacpan |