App-Sandy 0.19
Files
- Changes
- INSTALL
- LICENSE
- MANIFEST
- META.json
- META.yml
- Makefile.PL
- README.md
- completions/sandy-completion.bash
- completions/sandy-completion.zsh
- dist.ini
- docker/Dockerfile
- docker/README.md
- inc/SandyMakeMaker.pm
- lib/App/Sandy.pm
- lib/App/Sandy/Base.pm
- lib/App/Sandy/CLI.pm
- lib/App/Sandy/CLI/App.pm
- lib/App/Sandy/CLI/Command.pm
- lib/App/Sandy/Command/Citation.pm
- lib/App/Sandy/Command/Expression.pm
- lib/App/Sandy/Command/Expression/Add.pm
- lib/App/Sandy/Command/Expression/Dump.pm
- lib/App/Sandy/Command/Expression/Remove.pm
- lib/App/Sandy/Command/Expression/Restore.pm
- lib/App/Sandy/Command/Genome.pm
- lib/App/Sandy/Command/Quality.pm
- lib/App/Sandy/Command/Quality/Add.pm
- lib/App/Sandy/Command/Quality/Dump.pm
- lib/App/Sandy/Command/Quality/Remove.pm
- lib/App/Sandy/Command/Quality/Restore.pm
- lib/App/Sandy/Command/Transcriptome.pm
- lib/App/Sandy/Command/Variation.pm
- lib/App/Sandy/Command/Variation/Add.pm
- lib/App/Sandy/Command/Variation/Dump.pm
- lib/App/Sandy/Command/Variation/Remove.pm
- lib/App/Sandy/Command/Variation/Restore.pm
- lib/App/Sandy/Command/Version.pm
- lib/App/Sandy/DB.pm
- lib/App/Sandy/DB/Handle/Expression.pm
- lib/App/Sandy/DB/Handle/Quality.pm
- lib/App/Sandy/DB/Handle/Variation.pm
- lib/App/Sandy/DB/Schema.pm
- lib/App/Sandy/DB/Schema/Result/ExpressionMatrix.pm
- lib/App/Sandy/DB/Schema/Result/QualityProfile.pm
- lib/App/Sandy/DB/Schema/Result/StructuralVariation.pm
- lib/App/Sandy/InterlaceProcesses.pm
- lib/App/Sandy/PieceTable.pm
- lib/App/Sandy/Quality.pm
- lib/App/Sandy/Read.pm
- lib/App/Sandy/Read/PairedEnd.pm
- lib/App/Sandy/Read/SingleEnd.pm
- lib/App/Sandy/Role/BSearch.pm
- lib/App/Sandy/Role/Counter.pm
- lib/App/Sandy/Role/Digest.pm
- lib/App/Sandy/Role/IO.pm
- lib/App/Sandy/Role/ParseArgv.pm
- lib/App/Sandy/Role/RNorm.pm
- lib/App/Sandy/Role/RunTimeTemplate.pm
- lib/App/Sandy/Role/SeqID.pm
- lib/App/Sandy/Role/Statistic.pm
- lib/App/Sandy/Role/Template/Fastq.pm
- lib/App/Sandy/Role/Template/Sam.pm
- lib/App/Sandy/Seq.pm
- lib/App/Sandy/Seq/PairedEnd.pm
- lib/App/Sandy/Seq/SingleEnd.pm
- lib/App/Sandy/Simulator.pm
- lib/App/Sandy/Types.pm
- lib/App/Sandy/WeightedRaffle.pm
- perlcritic.ini
- script/sandy
- share/db.sqlite3
- t/00-load.t
- t/author-critic.t
- t/author-pod-syntax.t
- t/lib/TestsFor.pm
- t/lib/TestsFor/App/Sandy/PieceTable.pm
- t/lib/TestsFor/App/Sandy/Quality.pm
- t/lib/TestsFor/App/Sandy/Read.pm
- t/lib/TestsFor/App/Sandy/Read/PairedEnd.pm
- t/lib/TestsFor/App/Sandy/Read/SingleEnd.pm
- t/lib/TestsFor/App/Sandy/Seq.pm
- t/lib/TestsFor/App/Sandy/Seq/PairedEnd.pm
- t/lib/TestsFor/App/Sandy/Seq/SingleEnd.pm
- t/lib/TestsFor/App/Sandy/Simulator.pm
- t/test_classes.t
- weaver.ini