Files

• Build.PL
• Changes
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• README
• bin/BS_AddFromGFF.pl
• bin/BS_AddFromGenbank.pl
• bin/BS_Cartoonist.pl
• bin/BS_ChromosomeAnalyzer.pl
• bin/BS_ChromosomeCutter.pl
• bin/BS_ChromosomeDiff.pl
• bin/BS_ChromosomeSegmenter.pl
• bin/BS_ChromosomeSplicer.pl
• bin/BS_CodonJuggler.pl
• bin/BS_FirstGBrowse.pl
• bin/BS_PCRTagDumper.pl
• bin/BS_PCRTagger.pl
• bin/BS_RepeatSmasher.pl
• bin/BS_SeqChecker.pl
• bin/BS_auto_codon_juggle.pl
• bin/BS_auto_filter_enzymes.pl
• bin/BS_auto_gather_enzymes.pl
• bin/BS_auto_tag_genes.pl
• cairo/Armata-Regular.otf
• cairo/Armata_license.txt
• cairo/AurulentSansMono-Regular.otf
• cairo/Aurulent_license.txt
• cairo/BreeSerif-Regular.otf
• cairo/Bree_license.txt
• cairo/Cairo_colors.yaml
• cairo/Inconsolata.otf
• cairo/Inconsolata_license.txt
• cairo/Pecita.otf
• cairo/Pecita_license.txt
• cairo/VerilySerifMono.otf
• cairo/Verily_license.txt
• features/loxPsym.fasta
• features/rox.fasta
• features/universal_telomere_cap_left.fasta
• features/universal_telomere_cap_right.fasta
• foswiki/WebAtom.txt
• foswiki/WebChanges.txt
• foswiki/WebCreateNewTopic.txt
• foswiki/WebHome.txt
• foswiki/WebIndex.txt
• foswiki/WebLeftBar.txt
• foswiki/WebNotify.txt
• foswiki/WebPreferences.txt
• foswiki/WebRss.txt
• foswiki/WebSearch.txt
• foswiki/WebSearchAdvanced.txt
• foswiki/WebStatistics.txt
• foswiki/WebTopicList.txt
• gbrowse/BS_GBrowse_chromosome.conf
• gbrowse/GBrowse_colors.yaml
• gbrowse/conf_repository/repository_README.txt
• gbrowse_plugins/BS_Cartoonist.pm
• gbrowse_plugins/BS_ChromosomeAnalyzer.pm
• gbrowse_plugins/BS_ChromosomeCutter.pm
• gbrowse_plugins/BS_ChromosomeDiff.pm
• gbrowse_plugins/BS_ChromosomeSegmenter.pm
• gbrowse_plugins/BS_ChromosomeSplicer.pm
• gbrowse_plugins/BS_CodonJuggler.pm
• gbrowse_plugins/BS_PCRTagDumper.pm
• gbrowse_plugins/BS_PCRTagger.pm
• gbrowse_plugins/BS_RepeatSmasher.pm
• genome_repository/Escherichia_coli_MG1655/chr01/Escherichia_coli_MG1655_chr01_0_00.gff
• genome_repository/repository_README.txt
• ignore.txt
• install_util/BioStudioInstall.pm
• lib/Bio/BioStudio.pm
• lib/Bio/BioStudio/Analyze/ArbitraryFeatures.pm
• lib/Bio/BioStudio/Analyze/ProteinCodingGenes.pm
• lib/Bio/BioStudio/Analyze/RestrictionEnzymes.pm
• lib/Bio/BioStudio/BLAST.pm
• lib/Bio/BioStudio/Cairo.pm
• lib/Bio/BioStudio/Chromosome.pm
• lib/Bio/BioStudio/Chunk.pm
• lib/Bio/BioStudio/CodonJuggling.pm
• lib/Bio/BioStudio/DB.pm
• lib/Bio/BioStudio/DB/MySQL.pm
• lib/Bio/BioStudio/DB/SQLite.pm
• lib/Bio/BioStudio/Diff.pm
• lib/Bio/BioStudio/Diff/Difference.pm
• lib/Bio/BioStudio/Exceptions.pm
• lib/Bio/BioStudio/Foswiki.pm
• lib/Bio/BioStudio/GBrowse.pm
• lib/Bio/BioStudio/Git.pm
• lib/Bio/BioStudio/Marker.pm
• lib/Bio/BioStudio/Mask.pm
• lib/Bio/BioStudio/Megachunk.pm
• lib/Bio/BioStudio/PCRTagging.pm
• lib/Bio/BioStudio/Parallel.pm
• lib/Bio/BioStudio/Repository.pm
• lib/Bio/BioStudio/RestrictionEnzyme.pm
• lib/Bio/BioStudio/RestrictionEnzyme/Seek.pm
• lib/Bio/BioStudio/RestrictionEnzyme/Select.pm
• lib/Bio/BioStudio/RestrictionEnzyme/Store.pm
• lib/Bio/BioStudio/SeqFeature/Amplicon.pm
• lib/Bio/BioStudio/SeqFeature/CDSVariant.pm
• lib/Bio/BioStudio/SeqFeature/Chunk.pm
• lib/Bio/BioStudio/SeqFeature/Codon.pm
• lib/Bio/BioStudio/SeqFeature/Custom.pm
• lib/Bio/BioStudio/SeqFeature/Megachunk.pm
• lib/Bio/BioStudio/SeqFeature/ProposedDeletion.pm
• lib/Bio/BioStudio/SeqFeature/RestrictionSite.pm
• lib/Bio/BioStudio/SeqFeature/Tag.pm
• markers/LEU2.gff
• markers/URA3.gff
• t/00-load.t
• t/15-chromosome.t
• t/20-edit.t
• t/25-annotate.t
• t/boilerplate.t
• t/manifest.t
• t/pod-coverage.t
• t/pod.t
• t/test_repo/Escherichia_coli/chr01/Escherichia_coli_chr01_0_00.gff